Sdf2l1 (stromal cell-derived factor 2-like 1) - Rat Genome Database

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Gene: Sdf2l1 (stromal cell-derived factor 2-like 1) Rattus norvegicus
Analyze
Symbol: Sdf2l1
Name: stromal cell-derived factor 2-like 1
RGD ID: 1585844
Description: Enables ATPase binding activity; misfolded protein binding activity; and protein-folding chaperone binding activity. Acts upstream of or within ERAD pathway; cellular response to misfolded protein; and regulation of apoptotic process. Located in endoplasmic reticulum and membrane. Used to study type 2 diabetes mellitus. Orthologous to human SDF2L1 (stromal cell derived factor 2 like 1); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC680945; similar to stromal cell-derived factor 2-like 1; stromal cell-derived factor 2-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,376,878 - 97,379,120 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1197,376,878 - 97,379,120 (+)EnsemblGRCr8
mRatBN7.21183,872,659 - 83,874,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,872,659 - 83,874,902 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1192,596,386 - 92,598,629 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01185,257,528 - 85,259,771 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,311,108 - 84,313,351 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,122,271 - 88,124,513 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,122,271 - 88,124,513 (+)Ensemblrn6Rnor6.0
Rnor_5.01191,174,846 - 91,177,088 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41185,878,093 - 85,880,335 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1182,628,352 - 82,630,594 (+)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-citrinin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aconitine  (EXP)
Actein  (EXP)
afimoxifene  (ISO)
aldehydo-D-glucose  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
beauvericin  (ISO)
Benoxacor  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP,ISO)
cantharidin  (ISO)
carbon nanotube  (EXP,ISO)
chloroacetaldehyde  (ISO)
chloropicrin  (ISO)
choline  (ISO)
cidofovir anhydrous  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (EXP)
Cuprizon  (EXP)
cyclosporin A  (EXP,ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dichloroacetic acid  (ISO)
dioxygen  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
enniatin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
glucose  (ISO)
glutathione  (EXP)
hydralazine  (ISO)
hydrogen cyanide  (ISO)
hydrogen peroxide  (ISO)
hydrogen sulfide  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
isotretinoin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
metformin  (EXP)
methyl methanesulfonate  (ISO)
Monobutylphthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
naphthalene  (ISO)
nickel atom  (ISO)
nimesulide  (EXP)
nitrates  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
potassium cyanide  (ISO)
progesterone  (ISO)
quartz  (EXP)
quercetin  (ISO)
quinolin-8-ol  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP,ISO)
troglitazone  (EXP,ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. SDF2L1 interacts with the ER-associated degradation machinery and retards the degradation of mutant proinsulin in pancreatic beta-cells. Tiwari A, etal., J Cell Sci. 2013 May 1;126(Pt 9):1962-8. doi: 10.1242/jcs.117374. Epub 2013 Feb 26.
5. Three interacting genomic loci incorporating two novel mutations underlie the evolution of diet-induced diabetes. Yagil Y, etal., Mol Med. 2016 Jul 26;22. doi: 10.2119/molmed.2016.00114.
Additional References at PubMed
PMID:12475965   PMID:12477932  


Genomics

Comparative Map Data
Sdf2l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,376,878 - 97,379,120 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1197,376,878 - 97,379,120 (+)EnsemblGRCr8
mRatBN7.21183,872,659 - 83,874,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,872,659 - 83,874,902 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1192,596,386 - 92,598,629 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01185,257,528 - 85,259,771 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,311,108 - 84,313,351 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,122,271 - 88,124,513 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,122,271 - 88,124,513 (+)Ensemblrn6Rnor6.0
Rnor_5.01191,174,846 - 91,177,088 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41185,878,093 - 85,880,335 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1182,628,352 - 82,630,594 (+)NCBICelera
Cytogenetic Map11q23NCBI
SDF2L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382221,642,302 - 21,644,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2221,642,302 - 21,644,299 (+)Ensemblhg38GRCh38
GRCh372221,996,591 - 21,998,588 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362220,326,542 - 20,328,588 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342220,321,095 - 20,323,142NCBI
Celera225,814,082 - 5,816,128 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef224,954,363 - 4,956,409 (+)NCBIHuRef
CHM1_12221,996,740 - 21,998,786 (+)NCBICHM1_1
T2T-CHM13v2.02222,055,802 - 22,057,799 (+)NCBIT2T-CHM13v2.0
Sdf2l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391616,948,002 - 16,950,247 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1616,948,002 - 16,950,247 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381617,130,138 - 17,132,383 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,130,138 - 17,132,383 (-)Ensemblmm10GRCm38
MGSCv371617,130,231 - 17,132,476 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361617,043,701 - 17,045,928 (-)NCBIMGSCv36mm8
Celera1617,702,932 - 17,705,177 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.62NCBI
Sdf2l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544217,468,302 - 17,470,296 (-)Ensembl
ChiLan1.0NW_00495544217,468,302 - 17,470,296 (-)NCBIChiLan1.0ChiLan1.0
SDF2L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22331,187,488 - 31,189,507 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,736,220 - 33,738,236 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0223,764,899 - 3,766,932 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12220,248,566 - 20,250,607 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2220,248,566 - 20,250,607 (+)EnsemblpanPan2panpan1.1
SDF2L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,918,788 - 30,920,873 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,918,811 - 30,920,868 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2630,876,092 - 30,878,133 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02632,324,590 - 32,326,641 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2632,324,324 - 32,326,636 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12630,373,930 - 30,375,976 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,997,658 - 29,999,698 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02631,087,579 - 31,089,621 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sdf2l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,702,130 - 140,704,142 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366192,049,922 - 2,051,944 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366192,049,920 - 2,051,944 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDF2L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,246,710 - 50,251,642 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11450,249,607 - 50,251,636 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,700,127 - 53,702,117 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SDF2L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,465,795 - 4,467,882 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl194,465,797 - 4,467,761 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660852,529,331 - 2,532,763 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sdf2l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247471,195,055 - 1,197,105 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247471,195,043 - 1,197,105 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Sdf2l1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v142,407,957 - 2,410,191 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:44
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000002540
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat

Markers in Region
RH129561  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21183,874,499 - 83,874,651 (+)MAPPERmRatBN7.2
Rnor_6.01188,124,111 - 88,124,262NCBIRnor6.0
Rnor_5.01191,176,686 - 91,176,837UniSTSRnor5.0
RGSC_v3.41185,879,933 - 85,880,084UniSTSRGSC3.4
Celera1182,630,192 - 82,630,343UniSTS
RH 3.4 Map11723.82UniSTS
Cytogenetic Map11q23UniSTS
RH129696  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21183,874,499 - 83,874,663 (+)MAPPERmRatBN7.2
Rnor_6.01188,124,111 - 88,124,274NCBIRnor6.0
Rnor_5.01191,176,686 - 91,176,849UniSTSRnor5.0
RGSC_v3.41185,879,933 - 85,880,096UniSTSRGSC3.4
Celera1182,630,192 - 82,630,355UniSTS
RH 3.4 Map11721.71UniSTS
Cytogenetic Map11q23UniSTS
BI287777  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21183,874,686 - 83,874,844 (+)MAPPERmRatBN7.2
Rnor_6.01188,124,298 - 88,124,455NCBIRnor6.0
Rnor_5.01191,176,873 - 91,177,030UniSTSRnor5.0
RGSC_v3.41185,880,120 - 85,880,277UniSTSRGSC3.4
Celera1182,630,379 - 82,630,536UniSTS
RH 3.4 Map11722.22UniSTS
Cytogenetic Map11q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002540   ⟹   ENSRNOP00000002540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1197,376,878 - 97,379,120 (+)Ensembl
mRatBN7.2 Ensembl1183,872,659 - 83,874,902 (+)Ensembl
Rnor_6.0 Ensembl1188,122,271 - 88,124,513 (+)Ensembl
RefSeq Acc Id: NM_001109433   ⟹   NP_001102903
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,376,878 - 97,379,120 (+)NCBI
mRatBN7.21183,872,659 - 83,874,902 (+)NCBI
Rnor_6.01188,122,271 - 88,124,513 (+)NCBI
Rnor_5.01191,174,846 - 91,177,088 (+)NCBI
RGSC_v3.41185,878,093 - 85,880,335 (+)RGD
Celera1182,628,352 - 82,630,594 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102903 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL77877 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002540
  ENSRNOP00000002540.4
RefSeq Acc Id: NP_001102903   ⟸   NM_001109433
- Peptide Label: precursor
- UniProtKB: D4A9Y0 (UniProtKB/TrEMBL),   A6JSN0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002540   ⟸   ENSRNOT00000002540
Protein Domains
MIR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9Y0-F1-model_v2 AlphaFold D4A9Y0 1-220 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698336
Promoter ID:EPDNEW_R8861
Type:initiation region
Name:Sdf2l1_1
Description:stromal cell-derived factor 2-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01188,122,288 - 88,122,348EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585844 AgrOrtholog
BioCyc Gene G2FUF-20575 BioCyc
Ensembl Genes ENSRNOG00000001859 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002540 ENTREZGENE
  ENSRNOT00000002540.7 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro DUF4702 UniProtKB/TrEMBL
  MIR_dom_sf UniProtKB/TrEMBL
  MIR_motif UniProtKB/TrEMBL
KEGG Report rno:680945 UniProtKB/TrEMBL
NCBI Gene 680945 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 116 UniProtKB/TrEMBL
  COILED-COIL DOMAIN-CONTAINING PROTEIN 116 UniProtKB/TrEMBL
  STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN UniProtKB/TrEMBL
  STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam DUF4702 UniProtKB/TrEMBL
  MIR UniProtKB/TrEMBL
PhenoGen Sdf2l1 PhenoGen
PROSITE MIR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001859 RatGTEx
SMART MIR UniProtKB/TrEMBL
Superfamily-SCOP MIR UniProtKB/TrEMBL
UniProt A6JSM9_RAT UniProtKB/TrEMBL
  A6JSN0 ENTREZGENE, UniProtKB/TrEMBL
  D4A9Y0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-07-08 Sdf2l1  stromal cell-derived factor 2-like 1   LOC683036  similar to stromal cell-derived factor 2-like 1  Data merged from RGD:1591572 1643240 APPROVED
2008-04-30 Sdf2l1  stromal cell-derived factor 2-like 1   Sdf2l1_predicted  stromal cell-derived factor 2-like 1 (predicted)  'predicted' is removed 2292626 APPROVED
2007-03-26 Sdf2l1_predicted  stromal cell-derived factor 2-like 1 (predicted)  LOC680945  similar to stromal cell-derived factor 2-like 1  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 PROVISIONAL
2006-11-20 LOC683036  similar to stromal cell-derived factor 2-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC680945  similar to stromal cell-derived factor 2-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL