Cib4 (calcium and integrin binding family member 4)

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Gene: Cib4 (calcium and integrin binding family member 4) Rattus norvegicus

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Symbol:

Cib4

Name:

calcium and integrin binding family member 4

RGD ID:

1584147

Description:

Predicted to enable calcium ion binding activity and magnesium ion binding activity. Orthologous to human CIB4 (calcium and integrin binding family member 4); INTERACTS WITH acrylamide; bisphenol A; N,N-diethyl-m-toluamide.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

calcium and integrin-binding family member 4; LOC688819; rCG61337-like; similar to calcium and integrin binding family member 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	31,560,105 - 31,623,403 (+)	NCBI		GRCr8
mRatBN7.2	6	25,842,605 - 25,903,509 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	25,842,622 - 25,917,206 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	6	27,241,804 - 27,303,617 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	27,241,919 - 27,303,615 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	37,058,400 - 37,115,989 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	25,825,158 - 25,887,430 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	25,324,446 - 25,382,084 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Tatton-Brown-Rahman syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

methapyrilene (ISO)

N,N-diethyl-m-toluamide (EXP)

permethrin (EXP)

propanal (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

calcium ion binding (IBA,ISO)

magnesium ion binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22779914

Genomics

Comparative Map Data

Cib4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	31,560,105 - 31,623,403 (+)	NCBI		GRCr8
mRatBN7.2	6	25,842,605 - 25,903,509 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	25,842,622 - 25,917,206 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	6	27,241,804 - 27,303,617 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	27,241,919 - 27,303,615 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	37,058,400 - 37,115,989 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	25,825,158 - 25,887,430 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	25,324,446 - 25,382,084 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

CIB4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	26,581,205 - 26,641,366 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	26,581,205 - 26,641,366 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	26,804,073 - 26,864,234 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	26,657,577 - 26,717,715 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	26,647,704 - 26,707,827 (-)	NCBI		Celera
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	26,543,509 - 26,603,418 (-)	NCBI		HuRef
CHM1_1	2	26,734,122 - 26,794,199 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	26,620,353 - 26,681,744 (-)	NCBI		T2T-CHM13v2.0

Cib4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	30,642,927 - 30,703,191 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	30,642,927 - 30,703,180 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	30,485,583 - 30,545,845 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	30,485,583 - 30,545,836 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	30,787,957 - 30,848,209 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	30,762,164 - 30,822,417 (-)	NCBI		MGSCv36	mm8
Celera	5	27,963,768 - 28,024,353 (-)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	16.59	NCBI

Cib4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	8,604,799 - 8,669,916 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	8,604,866 - 8,669,890 (-)	NCBI	ChiLan1.0	ChiLan1.0

CIB4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	99,876,073 - 99,936,088 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	99,880,053 - 99,940,041 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	26,578,051 - 26,670,672 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	26,669,870 - 26,729,792 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

CIB4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	20,635,050 - 20,685,775 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	20,635,214 - 20,685,675 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	20,529,315 - 20,579,886 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	20,956,432 - 21,007,233 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	20,956,420 - 21,007,151 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	20,643,373 - 20,694,146 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	20,654,507 - 20,705,263 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	20,700,854 - 20,751,456 (-)	NCBI		UU_Cfam_GSD_1.0

Cib4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	64,945,208 - 64,996,761 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	5,842,964 - 5,894,306 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	5,805,911 - 5,894,306 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CIB4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	112,406,908 - 112,457,138 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	112,415,709 - 112,457,253 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	119,405,976 - 119,456,544 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Cib4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	8,718,687 - 8,771,025 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	8,704,726 - 8,813,441 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cib4
353 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	33
Count of miRNA genes:	33
Interacting mature miRNAs:	33
Transcripts:	ENSRNOT00000013123
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	41223769	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	27574569	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	14368788	59368788	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	34235784	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	16536140	61536140	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	14368788	59368788	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	54641141	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	41223769	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	37618905	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	41223769	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	39036266	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	43394190	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	41223769	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	41223769	Rat
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	27574569	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	27574569	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	42487980	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	42487980	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42838846	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	11735669	72593685	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	27574569	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	34434305	Rat
1641898	Colcr4	Colorectal carcinoma resistance QTL4	3.71	0.0007	intestine integrity trait (VT:0010554)	well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)	6	20338777	62613667	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	11735669	72593685	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	72227641	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	42487980	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	16536140	27261739	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	16536140	71636405	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	27574569	Rat

Markers in Region

D6Got17

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	25,873,516 - 25,873,721 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	27,269,817 - 27,270,021	NCBI	Rnor6.0
Rnor_5.0	6	37,086,838 - 37,087,042	UniSTS	Rnor5.0
RGSC_v3.4	6	25,856,188 - 25,856,392	UniSTS	RGSC3.4
RGSC_v3.4	6	25,856,187 - 25,856,392	RGD	RGSC3.4
RGSC_v3.1	6	25,859,141 - 25,859,345	RGD
Celera	6	25,353,028 - 25,353,232	UniSTS
RH 3.4 Map	6	97.9	UniSTS
RH 3.4 Map	6	97.9	RGD
RH 2.0 Map	6	210.4	RGD
Cytogenetic Map	6	q14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
7	2	7	24	30	24	7	6	7	46	27	11	3	31	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001068424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003754153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039113093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013123 ⟹ ENSRNOP00000013123

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	25,842,622 - 25,903,508 (+)	Ensembl
Rnor_6.0 Ensembl	6	27,241,919 - 27,303,615 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095942 ⟹ ENSRNOP00000096540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	25,842,622 - 25,902,008 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113134 ⟹ ENSRNOP00000092694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	25,842,622 - 25,917,206 (+)	Ensembl

RefSeq Acc Id:

XM_001068424 ⟹ XP_001068424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,560,105 - 31,623,403 (+)	NCBI
mRatBN7.2	6	25,842,605 - 25,903,509 (+)	NCBI
Rnor_6.0	6	27,241,804 - 27,303,617 (+)	NCBI
Rnor_5.0	6	37,058,400 - 37,115,989 (+)	NCBI
RGSC_v3.4	6	25,825,158 - 25,887,430 (+)	RGD

Sequence:

show sequence

CTGCCTTTCTGTTTGTTGTTTTGGAGGTGATGGTTCTTAGCCAGGGCATCAAAAGAACCTGTTT
GCCAACTCAGGGGCAGAAGGTGGAATGCTGGTCACCATGGTAACAGAATCAACGGACTGCACCA
GCTGCTGAGCCCTTGGGGGTTGAAGTCCTACTGCTGGCAGGAGGAGGCTGGGTTGGCATGGGAC
AGTGTTTGAGGTACCAGATGCAGTGGGAGGACCTGGAAGAGTACCAGGCTCTGACCTTCTTGAC
GAGAAACGAGATTCTGTGCATCCACGACACCTTCCTGAAGCTCTGCCCCCCGGGCAAGCACTAT
AAGGAGGCCACACTGACCATGGACCAGGTCAGCTCCCTTCCGGCTCTAAGGGTCAACCCTTTCA
GAGACCGCATCTGCAGGGTCTTCTCCCACGATGACGTGTTCTCCTTTGAAGATGTGCTGGGTAT
GGCATCTGTCTTCAGTGAACAGGCCTGCCCCAGCCTGAAGATTGAATATGCCTTTCGCATCTAT
GATTTTAACGAGAACGGCTTCATCGACGAGGAAGACCTCCAGAAGATAGTACTAAGACTACTGA
AAAGCGATGATGTGTCCGAGGACCTGCTGCAGGACGTCACTCACCACGTCCTGAGTGAGTCAGA
TCTGGACAATGACAACATGCTTTCCTTCTCCGAGTTCGAACATGCAATGGCCAAATCTCCGGAT
TTCATGAACTCCTTTCGGATTCACTTCTGGGGGTGCTGATGTGAAGTCACCTGGTTCAGCAGCT
TCAGGGAAGACTACCGGACACCCCTTCCCCGCCCCACCCCTGTATCCAGGCACTGTGGAATCTG
ATTTGAAGTATGACTCAACTCTGTCCCTCCTTCACCTCTAGAATATTGTTTACTAAATAAATAT
GTGTCTACCCA

hide sequence

RefSeq Acc Id:

XM_039113093 ⟹ XP_038969021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,560,105 - 31,623,403 (+)	NCBI
mRatBN7.2	6	25,842,612 - 25,903,509 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_001068424	(Get FASTA)	NCBI Sequence Viewer
	XP_038969021	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM02988	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013123.3
	ENSRNOP00000092694.1
	ENSRNOP00000096540.1

RefSeq Acc Id:	XP_001068424 ⟸ XM_001068424
- Peptide Label:	isoform X1
- UniProtKB:	D3ZX64 (UniProtKB/TrEMBL), A6HAD3 (UniProtKB/TrEMBL), A0A8I6B4C8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGQCLRYQMQWEDLEEYQALTFLTRNEILCIHDTFLKLCPPGKHYKEATLTMDQVSSLPALRVN PFRDRICRVFSHDDVFSFEDVLGMASVFSEQACPSLKIEYAFRIYDFNENGFIDEEDLQKIVLR LLKSDDVSEDLLQDVTHHVLSESDLDNDNMLSFSEFEHAMAKSPDFMNSFRIHFWGC hide sequence

Ensembl Acc Id:

ENSRNOP00000013123 ⟸ ENSRNOT00000013123

RefSeq Acc Id:	XP_038969021 ⟸ XM_039113093
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000096540 ⟸ ENSRNOT00000095942

Ensembl Acc Id:

ENSRNOP00000092694 ⟸ ENSRNOT00000113134

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZX64-F1-model_v2	AlphaFold	D3ZX64	1-185	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694469

Promoter ID:

EPDNEW_R4987

Type:

multiple initiation site

Name:

Cib4_1

Description:

calcium and integrin binding family member 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	27,241,928 - 27,241,988	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1584147	AgrOrtholog
BioCyc Gene	G2FUF-38311	BioCyc
Ensembl Genes	ENSRNOG00000009898	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013123.6	UniProtKB/TrEMBL
	ENSRNOT00000095942.1	UniProtKB/TrEMBL
	ENSRNOT00000113134.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	CIBP	UniProtKB/TrEMBL
	EF-hand-like_dom	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_Ca-bd	UniProtKB/TrEMBL
KEGG Report	rno:688819	UniProtKB/TrEMBL
NCBI Gene	688819	ENTREZGENE
PANTHER	CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2	UniProtKB/TrEMBL
	CALCIUM AND INTEGRIN-BINDING FAMILY MEMBER 4	UniProtKB/TrEMBL
Pfam	EF_hand_5	UniProtKB/TrEMBL
PhenoGen	Cib4	PhenoGen
PRINTS	RECOVERIN	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009898	RatGTEx
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A8I6AHH9_RAT	UniProtKB/TrEMBL
	A0A8I6B4C8	ENTREZGENE, UniProtKB/TrEMBL
	A6HAD3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZX64	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Cib4	calcium and integrin binding family member 4	LOC100365160	rCG61337-like	Data merged from RGD:2319614	1643240	APPROVED
2010-05-05	LOC100365160	rCG61337-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-06	Cib4	calcium and integrin binding family member 4	LOC688819	similar to calcium and integrin binding family member 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC688819	similar to calcium and integrin binding family member 4	LOC684260	similar to calcium and integrin binding family member 4	Data merged from RGD:1592687	1643240	APPROVED
2006-11-20	LOC684260	similar to calcium and integrin binding family member 4			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC688819	similar to calcium and integrin binding family member 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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