Cib4 (calcium and integrin binding family member 4) - Rat Genome Database

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Gene: Cib4 (calcium and integrin binding family member 4) Chinchilla lanigera
Analyze
Symbol: Cib4
Name: calcium and integrin binding family member 4
RGD ID: 8753042
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); magnesium ion binding (ortholog); ASSOCIATED WITH Tatton-Brown-Rahman syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium and integrin-binding family member 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,604,799 - 8,669,916 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,604,866 - 8,669,890 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cib4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,604,799 - 8,669,916 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,604,866 - 8,669,890 (-)NCBIChiLan1.0ChiLan1.0
CIB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,581,205 - 26,641,366 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,581,205 - 26,641,366 (-)EnsemblGRCh38hg38GRCh38
GRCh37226,804,073 - 26,864,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,657,577 - 26,717,715 (-)NCBINCBI36Build 36hg18NCBI36
Celera226,647,704 - 26,707,827 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,543,509 - 26,603,418 (-)NCBIHuRef
CHM1_1226,734,122 - 26,794,199 (-)NCBICHM1_1
T2T-CHM13v2.0226,620,353 - 26,681,744 (-)NCBIT2T-CHM13v2.0
Cib4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,642,927 - 30,703,191 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,642,927 - 30,703,180 (-)EnsemblGRCm39 Ensembl
GRCm38530,485,583 - 30,545,845 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,485,583 - 30,545,836 (-)EnsemblGRCm38mm10GRCm38
MGSCv37530,787,957 - 30,848,209 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,762,164 - 30,822,417 (-)NCBIMGSCv36mm8
Celera527,963,768 - 28,024,353 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.59NCBI
Cib4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,560,105 - 31,623,403 (+)NCBIGRCr8
mRatBN7.2625,842,605 - 25,903,509 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,842,622 - 25,917,206 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0627,241,804 - 27,303,617 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,241,919 - 27,303,615 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0637,058,400 - 37,115,989 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,825,158 - 25,887,430 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera625,324,446 - 25,382,084 (+)NCBICelera
Cytogenetic Map6q14NCBI
CIB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,876,073 - 99,936,088 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,880,053 - 99,940,041 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,578,051 - 26,670,672 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,669,870 - 26,729,792 (-)NCBIpanpan1.1PanPan1.1panPan2
CIB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,635,050 - 20,685,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,635,214 - 20,685,675 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,529,315 - 20,579,886 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01720,956,432 - 21,007,233 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1720,956,420 - 21,007,151 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,643,373 - 20,694,146 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,654,507 - 20,705,263 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,700,854 - 20,751,456 (-)NCBIUU_Cfam_GSD_1.0
Cib4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629264,945,208 - 64,996,761 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,842,964 - 5,894,306 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,805,911 - 5,894,306 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIB4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,406,908 - 112,457,138 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,415,709 - 112,457,253 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,405,976 - 119,456,544 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cib4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,718,687 - 8,771,025 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,704,726 - 8,813,441 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000012402   ⟹   ENSCLAP00000012260
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554698,604,799 - 8,669,916 (-)Ensembl
RefSeq Acc Id: XM_005400438   ⟹   XP_005400495
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554698,604,866 - 8,669,890 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400495 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012260
  ENSCLAP00000012260.1
Reference Protein Sequences
RefSeq Acc Id: XP_005400495   ⟸   XM_005400438
- UniProtKB: A0A8C2VEQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012260   ⟸   ENSCLAT00000012402
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008461 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012402 ENTREZGENE
  ENSCLAT00000012402.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Cib4 ENTREZGENE
PANTHER CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2 UniProtKB/TrEMBL
  CALCIUM AND INTEGRIN-BINDING FAMILY MEMBER 4 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C2VEQ1 ENTREZGENE, UniProtKB/TrEMBL