Or4n5 (olfactory receptor family 4 subfamily N member 5) - Rat Genome Database

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Gene: Or4n5 (olfactory receptor family 4 subfamily N member 5) Rattus norvegicus
Analyze
Symbol: Or4n5
Name: olfactory receptor family 4 subfamily N member 5
RGD ID: 1334059
Description: Predicted to enable olfactory receptor activity. Predicted to be active in plasma membrane. Orthologous to human OR4N5 (olfactory receptor family 4 subfamily N member 5); INTERACTS WITH bisphenol A; vinclozolin; 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1624; olfactory receptor gene Olr1624; olfactory receptor Olr1624; Olr1624; ratchr15-26412094-26411168_ORF
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81525,647,331 - 25,648,257 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1525,647,331 - 25,648,257 (-)EnsemblGRCr8
mRatBN7.21523,167,750 - 23,168,676 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1523,166,235 - 23,174,805 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1525,945,006 - 25,945,932 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01526,906,359 - 26,907,285 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01525,153,556 - 25,154,482 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1524,360,226 - 24,361,152 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1524,271,706 - 24,272,632 (-)NCBILyon_Normotensive
Lyon_Hypertensive1524,374,811 - 24,375,737 (-)NCBILyon_Hypertensive
F344_StmMcwi1524,976,142 - 24,977,068 (-)NCBIF344_StmMcwi
Rnor_6.01526,780,039 - 26,780,965 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1526,780,039 - 26,780,965 (-)Ensemblrn6Rnor6.0
Rnor_5.01530,704,833 - 30,705,759 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41526,395,468 - 26,396,394 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1523,530,039 - 23,530,965 (-)NCBICelera
RGSC_v3.11526,411,167 - 26,412,094 (-)NCBI
Cytogenetic Map15p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Or4n5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81525,647,331 - 25,648,257 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1525,647,331 - 25,648,257 (-)EnsemblGRCr8
mRatBN7.21523,167,750 - 23,168,676 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1523,166,235 - 23,174,805 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1525,945,006 - 25,945,932 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01526,906,359 - 26,907,285 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01525,153,556 - 25,154,482 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1524,360,226 - 24,361,152 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1524,271,706 - 24,272,632 (-)NCBILyon_Normotensive
Lyon_Hypertensive1524,374,811 - 24,375,737 (-)NCBILyon_Hypertensive
F344_StmMcwi1524,976,142 - 24,977,068 (-)NCBIF344_StmMcwi
Rnor_6.01526,780,039 - 26,780,965 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1526,780,039 - 26,780,965 (-)Ensemblrn6Rnor6.0
Rnor_5.01530,704,833 - 30,705,759 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41526,395,468 - 26,396,394 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1523,530,039 - 23,530,965 (-)NCBICelera
RGSC_v3.11526,411,167 - 26,412,094 (-)NCBI
Cytogenetic Map15p14NCBI
OR4N5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,138,820 - 20,145,471 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,138,820 - 20,145,471 (+)Ensemblhg38GRCh38
GRCh371420,606,979 - 20,613,630 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361419,681,735 - 19,682,661 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341419,681,734 - 19,682,661NCBI
Celera14473,483 - 474,409 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef14733,765 - 734,691 (+)NCBIHuRef
CHM1_11420,612,963 - 20,613,889 (+)NCBICHM1_1
T2T-CHM13v2.01414,333,608 - 14,340,261 (+)NCBIT2T-CHM13v2.0
Or4n5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391450,131,715 - 50,139,398 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1450,131,715 - 50,139,456 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381449,894,258 - 49,901,941 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1449,894,258 - 49,901,999 (-)Ensemblmm10GRCm38
MGSCv371450,513,933 - 50,521,616 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361448,816,209 - 48,823,892 (-)NCBIMGSCv36mm8
Celera1446,106,005 - 46,113,652 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1425.87NCBI
LOC100969123
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21521,679,596 - 21,680,522 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11420,896,086 - 20,897,012 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,044,704 - 1,045,630 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,108,400 - 19,109,325 (+)NCBIPanPan1.1PanPan1.1panPan2
OR4N5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.130590,601 - 592,858 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl30591,511 - 592,437 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha30636,337 - 637,263 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.030688,094 - 689,020 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl30688,094 - 689,020 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.130637,125 - 638,051 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.030733,102 - 734,028 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.030866,065 - 866,991 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC100152712
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1779,379,088 - 79,380,023 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2783,904,483 - 83,949,871 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC116913976
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11273,171,279 - 73,172,205 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:21
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000041733
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
mesenchyme
mesoderm
nervous system
sensory system
visual system
1 2 1 2 1 1 1 1 5 1 2 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000041733   ⟹   ENSRNOP00000049192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1523,166,235 - 23,174,805 (-)Ensembl
Rnor_6.0 Ensembl1526,780,039 - 26,780,965 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000134801   ⟹   ENSRNOP00000104241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1525,647,331 - 25,648,257 (-)Ensembl
RefSeq Acc Id: NM_001000089   ⟹   NP_001000089
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81525,647,331 - 25,648,257 (-)NCBI
mRatBN7.21523,167,750 - 23,168,676 (-)NCBI
Dahl_SR_JrHsd1524,360,226 - 24,361,152 (-)NCBI
Lyon_Normotensive1524,271,706 - 24,272,632 (-)NCBI
Lyon_Hypertensive1524,374,811 - 24,375,737 (-)NCBI
F344_StmMcwi1524,976,142 - 24,977,068 (-)NCBI
Rnor_6.01526,780,039 - 26,780,965 (-)NCBI
Rnor_5.01530,704,833 - 30,705,759 (-)NCBI
RGSC_v3.41526,395,468 - 26,396,394 (-)RGD
Celera1523,530,039 - 23,530,965 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000089 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88395 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000104241
  ENSRNOP00000104241.1
RefSeq Acc Id: NP_001000089   ⟸   NM_001000089
- UniProtKB: D3ZUX8 (UniProtKB/TrEMBL),   A6KE90 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000049192   ⟸   ENSRNOT00000041733
Ensembl Acc Id: ENSRNOP00000104241   ⟸   ENSRNOT00000134801
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUX8-F1-model_v2 AlphaFold D3ZUX8 1-308 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1334059 AgrOrtholog
BioCyc Gene G2FUF-14097 BioCyc
Ensembl Genes ENSRNOG00000045711 Ensembl
  ENSRNOG00000079422 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000134801 ENTREZGENE
  ENSRNOT00000134801.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_Receptors UniProtKB/TrEMBL
KEGG Report rno:290001 UniProtKB/TrEMBL
NCBI Gene 290001 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or4n5 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000045711 RatGTEx
  ENSRNOG00000079422 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0ABK0L4D0_RAT UniProtKB/TrEMBL
  A6KE90 ENTREZGENE, UniProtKB/TrEMBL
  D3ZUX8 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or4n5  olfactory receptor family 4 subfamily N member 5  Olr1624  olfactory receptor 1624  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1624  olfactory receptor 1624   Olr1624_predicted  olfactory receptor 1624 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1624_predicted  olfactory receptor 1624 (predicted)      Symbol and Name status set to approved 70820 APPROVED