LOC100969123 (olfactory receptor 4N5)

Gene: LOC100969123 (olfactory receptor 4N5) Pan paniscus

Analyze

Symbol:

LOC100969123

Name:

olfactory receptor 4N5

RGD ID:

11741322

Description:

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	21,679,596 - 21,680,522 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	20,896,086 - 20,897,012 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	1,044,704 - 1,045,630 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	19,108,400 - 19,109,325 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100969123
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	21,679,596 - 21,680,522 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	20,896,086 - 20,897,012 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	1,044,704 - 1,045,630 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	19,108,400 - 19,109,325 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

OR4N5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	20,138,820 - 20,145,471 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	20,138,820 - 20,145,471 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	20,606,979 - 20,613,630 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	19,681,735 - 19,682,661 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	19,681,734 - 19,682,661	NCBI
Celera	14	473,483 - 474,409 (+)	NCBI		Celera
Cytogenetic Map	14	q11.2	NCBI
HuRef	14	733,765 - 734,691 (+)	NCBI		HuRef
CHM1_1	14	20,612,963 - 20,613,889 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	14,333,608 - 14,340,261 (+)	NCBI		T2T-CHM13v2.0

Or4n5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	50,131,715 - 50,139,398 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	50,131,715 - 50,139,456 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	49,894,258 - 49,901,941 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	49,894,258 - 49,901,999 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	50,513,933 - 50,521,616 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	48,816,209 - 48,823,892 (-)	NCBI		MGSCv36	mm8
Celera	14	46,106,005 - 46,113,652 (-)	NCBI		Celera
Cytogenetic Map	14	C1	NCBI
cM Map	14	25.87	NCBI

Or4n5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	25,647,331 - 25,648,257 (-)	NCBI		GRCr8
mRatBN7.2	15	23,167,750 - 23,168,676 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	23,166,235 - 23,174,805 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	25,945,006 - 25,945,932 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	26,906,359 - 26,907,285 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	25,153,556 - 25,154,482 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	26,780,039 - 26,780,965 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	26,780,039 - 26,780,965 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	30,704,833 - 30,705,759 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	26,395,468 - 26,396,394 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	26,411,167 - 26,412,094 (-)	NCBI
Celera	15	23,530,039 - 23,530,965 (-)	NCBI		Celera
Cytogenetic Map	15	p14	NCBI

OR4N5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	590,601 - 592,858 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	591,511 - 592,437 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	636,337 - 637,263 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	688,094 - 689,020 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	688,094 - 689,020 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	637,125 - 638,051 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	733,102 - 734,028 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	866,065 - 866,991 (-)	NCBI		UU_Cfam_GSD_1.0

LOC100152712
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	79,379,088 - 79,380,023 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	83,904,483 - 83,949,871 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008964106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008964106 ⟹ XP_008962354

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	21,679,596 - 21,680,522 (+)	NCBI
NHGRI_mPanPan1	14	20,896,086 - 20,897,012 (+)	NCBI
Mhudiblu_PPA_v0	14	1,044,704 - 1,045,630 (+)	NCBI
PanPan1.1	14	19,108,400 - 19,109,325 (+)	NCBI

Sequence:

show sequence

ATGGAAACAGAGAACCTCACAGTGGTGACAGAATTCATTCTTCTTGGTCTGACCCAGTCTCAAG
ATGCTCAACTTCTGGTCTTTGTGCTAGTCTTAATTTTCTACCTTATCATCCTCCCTGGAAATTT
CCTCATCATTTTCACCATAAAGTCAGACCCTGGGCTCACANGCCCCCTCTATTTCTTTCTGGGC
AACTTGGCCTTACTGGATGCATCCTACTCCTTCATTGTGGTTCCCAGGATGTTGGTGGACTTCC
TCTCTGAGAAGAAGGTAATCTCCTATAGAAGCTGCATCACTCAGCTCTTTTTCTTGCATTTTCT
TGGAGCGGGAGAGATGTTCCTCCTCGTTGTGATGGCCTTTGACCGCTACATCGCCATCTGCCGG
CCTTTACACTATTCAACCATCATGAACCCTAGAGCCTGCTATGCATTATCGTTGGTTCTGTGGC
TTGGGGGCTTTATCCATTCCATTGTACAAGTAGCCCTTATTCTGCACTTGCCTTTCTGTGGCCC
AAACCAGCTCGATAACTTCTTCTGTGATGTTCCACAGGTCATCAAGCTGGCCTGCACCGATACC
TTTGTGGTGGAGCTTCTGATGGTCTCCAACAGTGGCCTGCTCAGCCTCCTGTGCTTCCTGGGCC
TTCTGGCCTCCTATGCAGTCATCCTCTGTCGTATAAGGGAGCACTCCTCTGAAGGAAAGAGCAA
GGCTATCTCCACATGCACCACCCATATTATCATTATATTTCTCATGTTTGGACCTGCTATTTTC
ATCTACACTCGCCCCTTCCAGGCTTTCCCAGCTGACAAGGTAGTTTCTCTTTTCCATACTGTCA
TCTTTCCTTTGATGAACCCTGTTATTTATACGCTTCGCAACCAGGAGGTGAAAGCTTCCATGAG
GAAGTTGTTAAGTCAACATATGTTTTGCTGA

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Protein Sequences


Protein RefSeqs	XP_008962354	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_008962354 ⟸ XM_008964106

- Sequence:

show sequence

METENLTVVTEFILLGLTQSQDAQLLVFVLVLIFYLIILPGNFLIIFTIKSDPGLTXPLYFFLG
NLALLDASYSFIVVPRMLVDFLSEKKVISYRSCITQLFFLHFLGAGEMFLLVVMAFDRYIAICR
PLHYSTIMNPRACYALSLVLWLGGFIHSIVQVALILHLPFCGPNQLDNFFCDVPQVIKLACTDT
FVVELLMVSNSGLLSLLCFLGLLASYAVILCRIREHSSEGKSKAISTCTTHIIIIFLMFGPAIF
IYTRPFQAFPADKVVSLFHTVIFPLMNPVIYTLRNQEVKASMRKLLSQHMFC

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC100969123	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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