Or2l13c (olfactory receptor family 2 subfamily L member 13C) - Rat Genome Database

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Gene: Or2l13c (olfactory receptor family 2 subfamily L member 13C) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or2l13c
Name: olfactory receptor family 2 subfamily L member 13C
RGD ID: 1333712
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be active in plasma membrane. Orthologous to human OR2L13 (olfactory receptor family 2 subfamily L member 13); INTERACTS WITH vinclozolin.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: LOC100910999; olfactory receptor 1567; olfactory receptor 2L13-like; olfactory receptor gene Olr1567; olfactory receptor MOR271-1 like protein; olfactory receptor Olr1567; Olr1567
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,855,639 - 94,856,577 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1194,855,639 - 94,856,577 (+)EnsemblGRCr8
mRatBN7.21181,351,268 - 81,352,206 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,346,702 - 81,354,382 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1190,084,135 - 90,085,073 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,745,329 - 82,746,267 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,798,618 - 81,799,556 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01185,265,890 - 85,266,828 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1185,014,910 - 85,015,848 (+)Ensemblrn6Rnor6.0
Rnor_5.01188,323,383 - 88,324,321 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41183,618,459 - 83,619,397 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1180,142,918 - 80,143,856 (+)NCBICelera
RGSC_v3.11183,676,379 - 83,677,318 (+)NCBI
Cytogenetic Map11q23NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15385621  


Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:84
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000075532, ENSRNOT00000075557
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)119046178196556255Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat


Expression

RNA-SEQ Expression

ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
renal system
4 12 19 16 4 3

Sequence


Ensembl Acc Id: ENSRNOT00000075557   ⟹   ENSRNOP00000065968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1181,346,702 - 81,353,240 (+)Ensembl
Rnor_6.0 Ensembl1185,014,910 - 85,015,848 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096280   ⟹   ENSRNOP00000077484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1181,346,702 - 81,354,382 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000125219   ⟹   ENSRNOP00000099052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,855,639 - 94,856,577 (+)Ensembl
RefSeq Acc Id: NM_001000043   ⟹   NP_001000043
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,855,639 - 94,856,577 (+)NCBI
mRatBN7.21181,351,268 - 81,352,206 (+)NCBI
Rnor_6.01185,265,890 - 85,266,828 (+)NCBI
Rnor_5.01188,323,383 - 88,324,321 (+)NCBI
RGSC_v3.41183,618,459 - 83,619,397 (+)RGD
Celera1180,182,087 - 80,183,025 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000043 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAV34194 (Get FASTA)   NCBI Sequence Viewer  
  EDL77978 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000099052
  ENSRNOP00000099052.1
RefSeq Acc Id: NP_001000043   ⟸   NM_001000043
- UniProtKB: Q5USB7 (UniProtKB/TrEMBL),   A0A8I5ZJH8 (UniProtKB/TrEMBL),   M0R908 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000065968   ⟸   ENSRNOT00000075557
Ensembl Acc Id: ENSRNOP00000077484   ⟸   ENSRNOT00000096280
Ensembl Acc Id: ENSRNOP00000099052   ⟸   ENSRNOT00000125219
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5USB7-F1-model_v2 AlphaFold Q5USB7 1-312 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333712 AgrOrtholog
BioCyc Gene G2FUF-20693 BioCyc
Ensembl Genes ENSRNOG00000046736 Ensembl
  ENSRNOG00000068165 Ensembl
  ENSRNOG00000074249 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000125219 ENTREZGENE
  ENSRNOT00000125219.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:287970 UniProtKB/TrEMBL
NCBI Gene 287970 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or2l13c PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046736 RatGTEx
  ENSRNOG00000068165 RatGTEx
  ENSRNOG00000074249 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I5ZJH8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KX13_RAT UniProtKB/TrEMBL
  M0R908 ENTREZGENE
  Q5USB7 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or2l13c  olfactory receptor family 2 subfamily L member 13C  Olr1567  olfactory receptor 1567  Symbol and Name Changed 1299863 APPROVED
2021-03-09 Olr1567  olfactory receptor 1567  LOC100910999  olfactory receptor 2L13-like  Data merged from RGD:6495738 737654 PROVISIONAL
2012-07-05 LOC100910999  olfactory receptor 2L13-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Olr1567  olfactory receptor 1567   Olr1567_predicted  olfactory receptor 1567 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1567_predicted  olfactory receptor 1567 (predicted)      Symbol and Name status set to approved 70820 APPROVED