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Gene: Spop (speckle type BTB/POZ protein) Rattus norvegicus

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Symbol:

Spop

Name:

speckle type BTB/POZ protein

RGD ID:

1311613

Description:

Predicted to enable several functions, including RNA polymerase II-specific DNA-binding transcription factor binding activity; identical protein binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process; protein polyubiquitination; and regulation of proteolysis. Predicted to act upstream of or within several processes, including glucose homeostasis; negative regulation of transcription by RNA polymerase II; and positive regulation of apoptotic process. Predicted to be located in nuclear speck. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in colorectal cancer; hepatocellular carcinoma; and lung adenocarcinoma. Orthologous to human SPOP (speckle type BTB/POZ protein); PARTICIPATES IN Hedgehog signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC287643; speckle-type POZ protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPOP (speckle type BTB/POZ protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Spop (speckle-type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Spop (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPOP (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPOP (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spop (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPOP (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SPOP (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spop (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Spop (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SPOP (speckle type BTB/POZ protein)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Spop (speckle-type BTB/POZ protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	spop (speckle-type POZ protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bath-43	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	rdx	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	spop	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	spop	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	80,854,890 - 80,935,781 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	80,854,973 - 80,935,146 (+)	Ensembl				GRCr8
mRatBN7.2	10	80,358,121 - 80,438,983 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	80,358,124 - 80,483,955 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	85,306,751 - 85,387,911 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	84,804,797 - 84,885,956 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	80,196,824 - 80,277,774 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	83,231,187 - 83,311,987 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	83,231,238 - 83,311,592 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	83,040,592 - 83,121,901 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	84,099,990 - 84,185,130 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	79,129,126 - 79,210,141 (+)	NCBI		Celera
RGSC_v3.1	10	84,102,831 - 84,199,894 (+)	NCBI
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

colorectal cancer (ISO)

Ductal Carcinoma (ISO)

Endometrial Neoplasms (ISO)

genetic disease (ISO)

hepatoblastoma (ISO)

hepatocellular carcinoma (ISO)

hereditary breast ovarian cancer syndrome (ISO)

lung adenocarcinoma (ISO)

lung non-small cell carcinoma (ISO)

Nabais Sa-de Vries Syndrome, Type 1 (ISO)

Nabais Sa-de Vries Syndrome, Type 2 (ISO)

prostate cancer (ISO)

Prostatic Neoplasms (ISO)

stomach cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (EXP)

acrolein (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenofibrate (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

glyphosate (ISO)

ochratoxin A (EXP)

ozone (ISO)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

tetraphene (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glucose homeostasis (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

obsolete negative regulation of DNA-binding transcription factor activity (ISO)

positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway (ISO)

positive regulation of type B pancreatic cell apoptotic process (ISO)

proteasome-mediated ubiquitin-dependent protein catabolic process (IEA,ISO)

protein catabolic process (IEA)

protein polyubiquitination (ISO)

protein ubiquitination (IEA)

ubiquitin-dependent protein catabolic process (ISO)

Cellular Component

Cul3-RING ubiquitin ligase complex (ISO)

nuclear speck (IEA,ISO)

nucleus (ISO)

Molecular Function

identical protein binding (ISO)

molecular function inhibitor activity (ISO)

protein binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA,ISO)

ubiquitin protein ligase binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	APPBP2 enhances non-small cell lung cancer proliferation and invasiveness through regulating PPM1D and SPOP.	Gong H, etal., EBioMedicine. 2019 Jun;44:138-149. doi: 10.1016/j.ebiom.2019.05.028. Epub 2019 May 16.
4.	S119N Mutation of the E3 Ubiquitin Ligase SPOP Suppresses SLC7A1 Degradation to Regulate Hepatoblastoma Progression.	He W, etal., Mol Ther Oncolytics. 2020 Oct 4;19:149-162. doi: 10.1016/j.omto.2020.09.008. eCollection 2020 Dec 16.
5.	Speckle-type POZ protein is negatively associated with malignancies and inhibits cell proliferation and migration in liver cancer.	Huang Y, etal., Tumour Biol. 2015 Dec;36(12):9753-61. doi: 10.1007/s13277-015-3753-z. Epub 2015 Jul 10.
6.	Exome sequencing of hepatoblastoma reveals novel mutations and cancer genes in the Wnt pathway and ubiquitin ligase complex.	Jia D, etal., Hepatology. 2014 Nov;60(5):1686-96. doi: 10.1002/hep.27243. Epub 2014 Sep 19.
7.	Decreased expression of speckle-type POZ protein for the prediction of poor prognosis in patients with non-small cell lung cancer.	Li JJ, etal., Oncol Lett. 2017 Sep;14(3):2743-2748. doi: 10.3892/ol.2017.6567. Epub 2017 Jul 10.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10.	GOA pipeline	RGD automated data pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Properties and Clinical Relevance of Speckle-Type POZ Protein in Human Colorectal Cancer.	Xu J, etal., J Gastrointest Surg. 2015 Aug;19(8):1484-96. doi: 10.1007/s11605-015-2767-6. Epub 2015 May 29.
14.	Speckle-type POZ protein functions as a tumor suppressor in non-small cell lung cancer due to DNA methylation.	Yao S, etal., Cancer Cell Int. 2018 Dec 22;18:213. doi: 10.1186/s12935-018-0711-z. eCollection 2018.
15.	SPOP suppresses tumorigenesis by regulating Hedgehog/Gli2 signaling pathway in gastric cancer.	Zeng C, etal., J Exp Clin Cancer Res. 2014 Sep 11;33:75. doi: 10.1186/s13046-014-0075-8.
16.	Silencing speckle-type POZ protein by promoter hypermethylation decreases cell apoptosis through upregulating Hedgehog signaling pathway in colorectal cancer.	Zhi X, etal., Cell Death Dis. 2016 Dec 29;7(12):e2569. doi: 10.1038/cddis.2016.435.

Additional References at PubMed

PMID:11279055	PMID:12477932	PMID:14528312	PMID:15121856	PMID:19684112	PMID:20679732	PMID:20811152	PMID:22085717

Genomics

Comparative Map Data

Spop
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	80,854,890 - 80,935,781 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	80,854,973 - 80,935,146 (+)	Ensembl				GRCr8
mRatBN7.2	10	80,358,121 - 80,438,983 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	80,358,124 - 80,483,955 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	85,306,751 - 85,387,911 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	84,804,797 - 84,885,956 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	80,196,824 - 80,277,774 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	83,231,187 - 83,311,987 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	83,231,238 - 83,311,592 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	83,040,592 - 83,121,901 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	84,099,990 - 84,185,130 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	79,129,126 - 79,210,141 (+)	NCBI		Celera
RGSC_v3.1	10	84,102,831 - 84,199,894 (+)	NCBI
Cytogenetic Map	10	q26	NCBI

SPOP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	49,598,884 - 49,678,163 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	49,598,884 - 49,678,201 (-)	Ensembl			hg38	GRCh38
GRCh37	17	47,676,246 - 47,755,525 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	45,031,245 - 45,110,524 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	45,031,246 - 45,110,524	NCBI
Celera	17	44,131,243 - 44,210,519 (-)	NCBI		Celera
Cytogenetic Map	17	q21.33	NCBI
HuRef	17	43,041,208 - 43,120,660 (-)	NCBI		HuRef
CHM1_1	17	47,741,302 - 47,820,599 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	50,462,011 - 50,541,274 (-)	NCBI		T2T-CHM13v2.0

Spop
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	95,304,909 - 95,384,236 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	95,304,906 - 95,384,232 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	95,414,083 - 95,493,410 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	95,414,080 - 95,493,406 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	95,275,397 - 95,354,724 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	95,230,204 - 95,309,103 (+)	NCBI		MGSCv36	mm8
Celera	11	105,038,004 - 105,132,151 (+)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	59.01	NCBI

Spop
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	11,897,592 - 11,970,269 (+)	Ensembl
ChiLan1.0	NW_004955451	11,897,642 - 11,970,269 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPOP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	65,784,045 - 65,863,127 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	70,590,547 - 70,669,645 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	43,685,913 - 43,765,277 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	48,417,634 - 48,495,725 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	48,417,634 - 48,440,623 (-)	Ensembl			panPan2	panpan1.1

SPOP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	25,685,723 - 25,752,953 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	25,686,439 - 25,752,900 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	25,143,931 - 25,211,377 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	26,480,666 - 26,548,198 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	26,480,865 - 26,548,177 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	25,248,665 - 25,316,107 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	25,507,666 - 25,575,090 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	25,636,940 - 25,704,391 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	25,105,808 - 25,180,727 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	11,894,406 - 11,970,155 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	11,894,449 - 11,969,730 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPOP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	25,792,630 - 25,860,595 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	25,792,621 - 25,860,630 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	25,770,383 - 25,777,618 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPOP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	69,990,554 - 70,073,241 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666077	41,098,933 - 41,182,120 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spop
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624795	5,698,131 - 5,769,209 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Spop
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	58,892,793 - 58,973,074 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Spop
706 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	130
Count of miRNA genes:	98
Interacting mature miRNAs:	117
Transcripts:	ENSRNOT00000006230
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	79272424	102982300	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	95464802	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
724516	Uae17	Urinary albumin excretion QTL 17	3.6		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	78707585	85720738	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67241334	98502431	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61843496	98710773	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	73695339	97272278	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	73049656	94495280	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	73695339	83061459	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	73695339	83061459	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	64139597	83061459	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61843633	83061236	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	55307972	93608131	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61843496	100198886	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
2325836	Bp346	Blood pressure QTL 346		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	84503487	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61843496	100198886	Rat
12880053	Cm104	Cardiac mass QTL 104		0.009	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	73950209	83959619	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	95604677	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

AU048745

Rat Assembly	Chr	Position (strand)	Source
Cytogenetic Map	5	q32	UniSTS
Cytogenetic Map	13	q24	UniSTS
Cytogenetic Map	6	q32	UniSTS
Cytogenetic Map	17	p12	UniSTS
Cytogenetic Map	16	p14	UniSTS
Cytogenetic Map	13	q26	UniSTS
Cytogenetic Map	10	q22	UniSTS
Cytogenetic Map	7	q11	UniSTS
Cytogenetic Map	8	q24	UniSTS
Cytogenetic Map	5	q21	UniSTS
Cytogenetic Map	4	q24	UniSTS
Cytogenetic Map	2	q11	UniSTS
Cytogenetic Map	1	q54	UniSTS
Cytogenetic Map	1	q36	UniSTS
Cytogenetic Map	18	p11	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	10	q24	UniSTS
Cytogenetic Map	8	q31	UniSTS
Cytogenetic Map	3	q21	UniSTS
Cytogenetic Map	13	p13	UniSTS
Cytogenetic Map	1	q21	UniSTS
Cytogenetic Map	11	q23	UniSTS
Cytogenetic Map	10	q31	UniSTS
Cytogenetic Map	16	q12.2	UniSTS
Cytogenetic Map	3	q24	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	3	p13	UniSTS

BE104182

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	80,438,751 - 80,438,910 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	83,311,761 - 83,311,919	NCBI	Rnor6.0
Rnor_5.0	10	83,121,675 - 83,121,833	UniSTS	Rnor5.0
RGSC_v3.4	10	84,185,298 - 84,185,456	UniSTS	RGSC3.4
Celera	10	79,210,309 - 79,210,467	UniSTS
RH 3.4 Map	10	745.3	UniSTS
Cytogenetic Map	10	q31	UniSTS

MARC_9787-9788:996688611:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	80,913,771 - 80,914,454 (+)	Marker Load Pipeline
mRatBN7.2	10	80,416,972 - 80,417,655 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	83,289,985 - 83,290,667	NCBI	Rnor6.0
Rnor_5.0	10	83,099,899 - 83,100,581	UniSTS	Rnor5.0
RGSC_v3.4	10	84,163,522 - 84,164,204	UniSTS	RGSC3.4
Celera	10	79,188,532 - 79,189,214	UniSTS
Cytogenetic Map	10	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006230 ⟹ ENSRNOP00000006230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	80,854,973 - 80,935,146 (+)	Ensembl
mRatBN7.2 Ensembl	10	80,358,224 - 80,438,557 (+)	Ensembl
Rnor_6.0 Ensembl	10	83,231,409 - 83,311,592 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077625 ⟹ ENSRNOP00000072808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	80,358,188 - 80,437,454 (+)	Ensembl
Rnor_6.0 Ensembl	10	83,231,238 - 83,310,660 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100446 ⟹ ENSRNOP00000084460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	80,896,516 - 80,935,146 (+)	Ensembl
mRatBN7.2 Ensembl	10	80,358,124 - 80,483,955 (+)	Ensembl

RefSeq Acc Id:

NM_001100496 ⟹ NP_001093966

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,936 - 80,935,781 (+)	NCBI
mRatBN7.2	10	80,358,160 - 80,438,983 (+)	NCBI
Rnor_6.0	10	83,231,409 - 83,311,593 (+)	NCBI
Rnor_5.0	10	83,040,592 - 83,121,901 (+)	NCBI
RGSC_v3.4	10	84,099,990 - 84,185,130 (+)	RGD
Celera	10	79,129,126 - 79,210,141 (+)	RGD

Sequence:

show sequence

GTGTATCGGCGGTCCCGCAGGTCCCGGATGTTGCGGGCAGTATGAGGCGAGCGCAGGGGGACAG
GGACCAGCAGCTGTCGCCGCCGTTCTCAGGGTGAAGAAAGACCAGAAATCTTTGCCCCCTGACT
TTGGAGACCCAGTTTAACCTTCAAACTGGCGATGTCAAGGGTTCCAAGTCCTCCACCTCCGGCA
GAAATGTCGAGTGGTCCTGTTGCTGAGAGCTGGTGCTATACACAGATCAAGGTAGTGAAGTTCT
CCTACATGTGGACCATCAATAACTTTAGTTTTTGCCGGGAGGAAATGGGTGAAGTCATAAAAAG
TTCAACTTTTTCATCAGGAGCCAATGATAAGCTGAAATGGTGTTTGCGAGTAAACCCGAAGGGG
CTGGATGAGGAAAGCAAAGATTACCTGTCGCTCTACCTGTTGTTGGTCAGCTGTCCAAAGAGTG
AGGTTCGGGCCAAGTTCAAGTTCTCCATCCTGAATGCCAAGGGAGAAGAAACCAAAGCTATGGA
GAGCCAGCGAGCTTATAGGTTCGTGCAAGGCAAAGACTGGGGATTCAAAAAATTCATCCGTAGA
GATTTTCTCTTGGACGAGGCCAATGGACTTCTCCCTGATGACAAGCTCACCCTCTTCTGCGAGG
TGAGTGTAGTCCAAGACTCTGTCAATATCTCTGGGCAGAATACTATGAACATGGTAAAGGTCCC
TGAATGCCGGTTGGCTGACGAGTTAGGAGGGCTGTGGGAGAACTCTCGATTCACAGACTGCTGC
TTGTGTGTGGCTGGCCAAGAATTCCAGGCTCACAAGGCTATCTTAGCAGCTCGGTCTCCAGTTT
TCAGTGCCATGTTTGAACATGAAATGGAGGAGAGCAAAAAGAATCGGGTTGAAATTAACGATGT
AGAACCTGAAGTTTTTAAGGAAATGATGTGCTTCATCTACACGGGGAAGGCACCAAACCTTGAC
AAAATGGCTGATGATTTGCTGGCAGCTGCTGACAAGTACGCCCTGGAGCGTTTGAAGGTCATGT
GCGAGGATGCCCTCTGCAGTAACCTCTCTGTGGAGAACGCTGCAGAGATTCTCATCCTGGCTGA
CCTCCACAGCGCAGATCAGCTGAAAACCCAGGCAGTGGATTTCATCAACTATCATGCTTCGGAT
GTCTTGGAGACCTCTGGGTGGAAGTCAATGGTGGTGTCACATCCCCACTTAGTGGCAGAAGCGT
ACCGCTCTCTGGCTTCCGCACAATGCCCTTTCCTGGGGCCCCCGCGCAAACGCCTGAAGCAATC
CTAAGATCCTGCCTGTTGGGAGACTCCATTCATTTTCCAGCAGCAGCAGCCACCGTTGCTGCCA
CTGACTGCCAGGTAGACCGCGCGGTCTGTGCGGCTTTTACTCTGTGTCGGGGGAGATGGCACCA
TGGCCACCCAGACTTTAACAGCACTAAATAACTTAGGGGAGCTGGGGGAGGGAAGGGCCCAGGA
CTCGGGCCACTCAGCCTAATGAAACCCTGTTGCTCTGTCACCGTGTGCCCTTTGGCCTGACCAA
GTTTGACACTGGGATTCAGTTTAGGCGCCAGCCTCAAGCACATCCCAGCAGTGGTACTTCGGAG
AAATCAGCATCTGACTGAGCAGAACAAATCGTCAGGTGCCTGGAGCAAAAAGGAAAAAAAAAGC
AGAAACAAGTGGACATTTAGTTTTAAGAGATGGAAAAAGGAAAGAAGAAAGATTTTTTTTCGAA
AATCAGTTTGTGGATTCCAGTAGTATTTATGTTGAAAGAAGCAAATTTTAGTTCAACTGTGGAT
ATTTGTGAAAACTCCTCACCACCACCCAAGTGTCAGAAGAGCTCTCTCGCTAGCACTTACTGTT
TGCAAGAAGCCATCCTTTATCCTCTGAAAGGTGGCCCATGGCGGCAGAAGGGAGGAAGTCATCT
GATCTGGAAAGCGAGTGTTTGACAGTAGTGGCTTCTGCAGAAATTCTTACTGGTATTAAAAACT
GGAAAAAATAATTCATCCAGAATTCATACTGTCTTGATAAAAACTATGATTCTGTTTTTTAGAT
ATCGTGGAAAATGGATTTTTTTGGCATTTTTCTCTGATTTTATGTTTTCTTCCCTTCCCTTTTT
CTGAGAGAGAGGGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAAAGAGAGGAGAAACAAATACAGAAAATACATAAAACGAAAAGAAGAGAAAAGG
AAATTTTATTATTATTGCTATGTGAAAAAAAATCTCAGCCCAGATGGCCTGGCTGTTTGTACCT
GACTCGTCGCCTGCATAGGAGCCGGTCCTGTCACTTCTGATTAGCCCCTCTTCCAAAGGGGAGA
CTTCAAATGTTAACTTTTTCTTTTTGAAAATATAAATAATTACTATTTTGTACTGTGTGGTAAA
AAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008767968 ⟹ XP_008766190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,908 - 80,935,372 (+)	NCBI
mRatBN7.2	10	80,358,171 - 80,438,977 (+)	NCBI
Rnor_6.0	10	83,231,304 - 83,311,987 (+)	NCBI

Sequence:

show sequence

TGTGTGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTATGTGTGTGTGTGT
GTGTGTGTTTGTATGTGTGTGCGCGCTCCAAGAGTGTATTTGTGTATCGGCGGTCCCGCAGGTC
CCGGATGTTGCGGGCAGTATGAGGCGAGCGCAGGGGGACAGGGACCAGCAGCTGTCGCCGCCGT
TCTCAGAAATTTCCTGCTAGACAAGAAAAATTAGAGTTTTCCTACAGATTTGACTTGGGTGAAG
AAAGACCAGAAATCTTTGCCCCCTGACTTTGGAGACCCAGTTTAACCTTCAAACTGGCGATGTC
AAGGGTTCCAAGTCCTCCACCTCCGGCAGAAATGTCGAGTGGTCCTGTTGCTGAGAGCTGGTGC
TATACACAGATCAAGGTAGTGAAGTTCTCCTACATGTGGACCATCAATAACTTTAGTTTTTGCC
GGGAGGAAATGGGTGAAGTCATAAAAAGTTCAACTTTTTCATCAGGAGCCAATGATAAGCTGAA
ATGGTGTTTGCGAGTAAACCCGAAGGGGCTGGATGAGGAAAGCAAAGATTACCTGTCGCTCTAC
CTGTTGTTGGTCAGCTGTCCAAAGAGTGAGGTTCGGGCCAAGTTCAAGTTCTCCATCCTGAATG
CCAAGGGAGAAGAAACCAAAGCTATGGAGAGCCAGCGAGCTTATAGGTTCGTGCAAGGCAAAGA
CTGGGGATTCAAAAAATTCATCCGTAGAGATTTTCTCTTGGACGAGGCCAATGGACTTCTCCCT
GATGACAAGCTCACCCTCTTCTGCGAGGTGAGTGTAGTCCAAGACTCTGTCAATATCTCTGGGC
AGAACACTATGAACATGGTAAAGGTCCCTGAATGCCGGTTGGCTGACGAGTTAGGAGGGCTGTG
GGAGAACTCTCGATTCACAGACTGCTGCTTGTGTGTGGCTGGCCAAGAATTCCAGGCTCACAAG
GCTATCTTAGCAGCTCGGTCTCCAGTTTTCAGTGCCATGTTTGAACATGAAATGGAGGAGAGCA
AAAAGAATCGGGTTGAAATTAACGATGTAGAACCTGAAGTTTTTAAGGAAATGATGTGCTTCAT
CTACACGGGGAAGGCACCAAACCTTGACAAAATGGCTGATGATTTGCTGGCAGCTGCTGACAAG
TACGCCCTGGAGCGTTTGAAGGTCATGTGCGAGGATGCCCTCTGCAGTAACCTCTCTGTGGAGA
ACGCTGCAGAGATTCTCATCCTGGCTGACCTCCACAGCGCAGATCAGCTGAAAACCCAGGCAGT
GGATTTCATCAACTATCATGCTTCGGATGTCTTGGAGACCTCTGGGTGGAAGTCAATGGTGGTG
TCACATCCCCACTTAGTGGCAGAAGCGTACCGCTCTCTGGCTTCCGCACAATGCCCTTTCCTGG
GGCCCCCGCGCAAACGCCTGAAGCAATCCTAAGATCCTGCCTGTTGGGAGACTCCATTCATTTT
CCAGCAGCAGCAGCCACCGTTGCTGCCACTGACTGCCAGGTAGACCGCGCGGTCTGTGCGGCTT
TTACTCTGTGTCGGGGGAGATGGCACCATGGCCACCCAGACTTTAACAGCACTAAATAACTTAG
GGGAGCTGGGGGAGGGAAGGGCCCAGGACTCGGGCCACTCAGCCTAATGAAACCCTGTTGCTCT
GTCACCGTGTGCCCTTTGGCCTGACCAAGTTTGACACTGGGATTCAGTTTAGGCGCCAGCCTCA
AGCACATCCCAGCAGTGGTACTTCGGAGAAATCAGCATCTGACTGAGCAGAACAAATCGTCAGG
TGCCTGGAGCAAAAAGGAAAAAAAAAGCAGAAACAAGTGGACATTTAGTTTTAAGAGATGGAAA
AAGGAAAGAAGAAAGATTTTTTTTCGAAAATCAGTTTGTGGATTCCAGTAGTATTTATGTTGAA
AGAAGCAAATTTTAGTTCAACTGTGGATATTTGTGAAAACTCCTCACCACCACCCAAGTGTCAG
AAGAGCTCTCTCGCTAGCACTTACTGTTTGCAAGAAGCCATCCTTTATCCTCTGAAAGGTGGCC
CATGGCGGCAGAAGGGAGGAAGTCATCTGATCTGGAAAGCGAGTGTTTGACAGTAGTGGCTTCT
GCAGAAATTCTTACTGGTATTAAAAACTGGAAAAAATAATTCATCCAGAATTCATACTGTCTTG
ATAAAAACTATGATTCTGTTTTTTAGATATCGTGGAAAATGGATTTTTTTGGCATTTTTCTCTG
ATTTTATGTTTTCTTCCCTTCCCTTTTTCTGAGAGAGAGGGAGAGAGAGAGGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAAAGAGAAAGAGAGGAGAAACAAATACAGAAAATACATAAAACGAAAA
GAAGAGAAAAGGAAATTTTATTATTATTGCTATGTGAAAAAAAATCCCAGCCCAGATGGCCTGG
CTGTTTGTACCTGACTCGTCGCCTGCATAGGAGCCGGTCCTGTCACTTCTGATTAGCCCCTCTT
CCAAAGGGGAGACTTCAAATGTTAACTTTTTCTTTTTGAAAATATAAATAATTACTATTTTGTA
CTGTGTGGTATCTCTGGTCTTTTGTTTCATTCACTTGGCTTGCCTCTTGGGTCTCAGTTTCTTG
CTTGTGAGATTTCGAAGCCCTGGTTTGAGCTTCGTCTTGCAGGGATTATGTTCAGAATGTCTAA
GAAGCAGTAGGGAGTTATTTACTCTCCATAGTCTCAAGTTTTCTTTGTGAGCTCAGCATCTGCC
AGTCTTTTGTCCTCCTTGAGGTTCTGCCAACCATGTCCTGGTGAGAGTCTGGGACCAGGTCCCA
CTCCACCAAGGCAAACAATTGTAGTGGGCTTCTTCTGCACCCTGTGTGTGTTAATACCTGATCC
CAAATCTCCTTTCTCCTAACAAAATAAAAAGAAATATTTAGGGGTCATGAACATGGAGATTAAA
TAAAGGGAAATTGTTGTGTC

hide sequence

RefSeq Acc Id:

XM_017597130 ⟹ XP_017452619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,935 - 80,935,372 (+)	NCBI
mRatBN7.2	10	80,358,165 - 80,438,977 (+)	NCBI
Rnor_6.0	10	83,231,268 - 83,311,987 (+)	NCBI

Sequence:

show sequence

CCCAGGCCGGTGTGTGTCGGTCCCGGATGTTGCGGGCAGTATGAGGCGAGCGCAGGGGGACAGG
GACCAGCAGCTGTCGCCGCCGTTCTCAGGGTGAAGAAAGACCAGAAATCTTTGCCCCCTGACTT
TGGAGACCCAGTTTAACCTTCAAACTGGCGATGTCAAGGGTTCCAAGTCCTCCACCTCCGGCAG
AAATGTCGAGTGGTCCTGTTGCTGAGAGCTGGTGCTATACACAGATCAAGGTAGTGAAGTTCTC
CTACATGTGGACCATCAATAACTTTAGTTTTTGCCGGGAGGAAATGGGTGAAGTCATAAAAAGT
TCAACTTTTTCATCAGGAGCCAATGATAAGCTGAAATGGTGTTTGCGAGTAAACCCGAAGGGGC
TGGATGAGGAAAGCAAAGATTACCTGTCGCTCTACCTGTTGTTGGTCAGCTGTCCAAAGAGTGA
GGTTCGGGCCAAGTTCAAGTTCTCCATCCTGAATGCCAAGGGAGAAGAAACCAAAGCTATGGAG
AGCCAGCGAGCTTATAGGTTCGTGCAAGGCAAAGACTGGGGATTCAAAAAATTCATCCGTAGAG
ATTTTCTCTTGGACGAGGCCAATGGACTTCTCCCTGATGACAAGCTCACCCTCTTCTGCGAGGT
GAGTGTAGTCCAAGACTCTGTCAATATCTCTGGGCAGAACACTATGAACATGGTAAAGGTCCCT
GAATGCCGGTTGGCTGACGAGTTAGGAGGGCTGTGGGAGAACTCTCGATTCACAGACTGCTGCT
TGTGTGTGGCTGGCCAAGAATTCCAGGCTCACAAGGCTATCTTAGCAGCTCGGTCTCCAGTTTT
CAGTGCCATGTTTGAACATGAAATGGAGGAGAGCAAAAAGAATCGGGTTGAAATTAACGATGTA
GAACCTGAAGTTTTTAAGGAAATGATGTGCTTCATCTACACGGGGAAGGCACCAAACCTTGACA
AAATGGCTGATGATTTGCTGGCAGCTGCTGACAAGTACGCCCTGGAGCGTTTGAAGGTCATGTG
CGAGGATGCCCTCTGCAGTAACCTCTCTGTGGAGAACGCTGCAGAGATTCTCATCCTGGCTGAC
CTCCACAGCGCAGATCAGCTGAAAACCCAGGCAGTGGATTTCATCAACTATCATGCTTCGGATG
TCTTGGAGACCTCTGGGTGGAAGTCAATGGTGGTGTCACATCCCCACTTAGTGGCAGAAGCGTA
CCGCTCTCTGGCTTCCGCACAATGCCCTTTCCTGGGGCCCCCGCGCAAACGCCTGAAGCAATCC
TAAGATCCTGCCTGTTGGGAGACTCCATTCATTTTCCAGCAGCAGCAGCCACCGTTGCTGCCAC
TGACTGCCAGGTAGACCGCGCGGTCTGTGCGGCTTTTACTCTGTGTCGGGGGAGATGGCACCAT
GGCCACCCAGACTTTAACAGCACTAAATAACTTAGGGGAGCTGGGGGAGGGAAGGGCCCAGGAC
TCGGGCCACTCAGCCTAATGAAACCCTGTTGCTCTGTCACCGTGTGCCCTTTGGCCTGACCAAG
TTTGACACTGGGATTCAGTTTAGGCGCCAGCCTCAAGCACATCCCAGCAGTGGTACTTCGGAGA
AATCAGCATCTGACTGAGCAGAACAAATCGTCAGGTGCCTGGAGCAAAAAGGAAAAAAAAAGCA
GAAACAAGTGGACATTTAGTTTTAAGAGATGGAAAAAGGAAAGAAGAAAGATTTTTTTTCGAAA
ATCAGTTTGTGGATTCCAGTAGTATTTATGTTGAAAGAAGCAAATTTTAGTTCAACTGTGGATA
TTTGTGAAAACTCCTCACCACCACCCAAGTGTCAGAAGAGCTCTCTCGCTAGCACTTACTGTTT
GCAAGAAGCCATCCTTTATCCTCTGAAAGGTGGCCCATGGCGGCAGAAGGGAGGAAGTCATCTG
ATCTGGAAAGCGAGTGTTTGACAGTAGTGGCTTCTGCAGAAATTCTTACTGGTATTAAAAACTG
GAAAAAATAATTCATCCAGAATTCATACTGTCTTGATAAAAACTATGATTCTGTTTTTTAGATA
TCGTGGAAAATGGATTTTTTTGGCATTTTTCTCTGATTTTATGTTTTCTTCCCTTCCCTTTTTC
TGAGAGAGAGGGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGAGA
GGAGAAACAAATACAGAAAATACATAAAACGAAAAGAAGAGAAAAGGAAATTTTATTATTATTG
CTATGTGAAAAAAAATCCCAGCCCAGATGGCCTGGCTGTTTGTACCTGACTCGTCGCCTGCATA
GGAGCCGGTCCTGTCACTTCTGATTAGCCCCTCTTCCAAAGGGGAGACTTCAAATGTTAACTTT
TTCTTTTTGAAAATATAAATAATTACTATTTTGTACTGTGTGGTATCTCTGGTCTTTTGTTTCA
TTCACTTGGCTTGCCTCTTGGGTCTCAGTTTCTTGCTTGTGAGATTTCGAAGCCCTGGTTTGAG
CTTCGTCTTGCAGGGATTATGTTCAGAATGTCTAAGAAGCAGTAGGGAGTTATTTACTCTCCAT
AGTCTCAAGTTTTCTTTGTGAGCTCAGCATCTGCCAGTCTTTTGTCCTCCTTGAGGTTCTGCCA
ACCATGTCCTGGTGAGAGTCTGGGACCAGGTCCCACTCCACCAAGGCAAACAATTGTAGTGGGC
TTCTTCTGCACCCTGTGTGTGTTAATACCTGATCCCAAATCTCCTTTCTCCTAACAAAATAAAA
AGAAATATTTAGGGGTCATGAACATGGAGATTAAATAAAGGGAAATTGTTGTGTC

hide sequence

RefSeq Acc Id:

XM_039085592 ⟹ XP_038941520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,898 - 80,935,372 (+)	NCBI
mRatBN7.2	10	80,358,165 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_039085596 ⟹ XP_038941524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,890 - 80,935,372 (+)	NCBI
mRatBN7.2	10	80,358,121 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_039085597 ⟹ XP_038941525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,935 - 80,935,372 (+)	NCBI
mRatBN7.2	10	80,358,165 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_039085600 ⟹ XP_038941528

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,964 - 80,935,372 (+)	NCBI
mRatBN7.2	10	80,358,219 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_063268711 ⟹ XP_063124781

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,957 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268712 ⟹ XP_063124782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,916 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268713 ⟹ XP_063124783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,942 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268714 ⟹ XP_063124784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,925 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268716 ⟹ XP_063124786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,961 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268717 ⟹ XP_063124787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,856,691 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268718 ⟹ XP_063124788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,856,691 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268719 ⟹ XP_063124789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,856,691 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268720 ⟹ XP_063124790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,896,545 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268721 ⟹ XP_063124791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,903 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268722 ⟹ XP_063124792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,916 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268723 ⟹ XP_063124793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,854,919 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268724 ⟹ XP_063124794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,855,772 - 80,935,372 (+)	NCBI

RefSeq Acc Id:

XM_063268725 ⟹ XP_063124795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	80,913,732 - 80,935,372 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001093966	(Get FASTA)	NCBI Sequence Viewer
	XP_008766190	(Get FASTA)	NCBI Sequence Viewer
	XP_017452619	(Get FASTA)	NCBI Sequence Viewer
	XP_038941520	(Get FASTA)	NCBI Sequence Viewer
	XP_038941524	(Get FASTA)	NCBI Sequence Viewer
	XP_038941525	(Get FASTA)	NCBI Sequence Viewer
	XP_038941528	(Get FASTA)	NCBI Sequence Viewer
	XP_063124781	(Get FASTA)	NCBI Sequence Viewer
	XP_063124782	(Get FASTA)	NCBI Sequence Viewer
	XP_063124783	(Get FASTA)	NCBI Sequence Viewer
	XP_063124784	(Get FASTA)	NCBI Sequence Viewer
	XP_063124786	(Get FASTA)	NCBI Sequence Viewer
	XP_063124787	(Get FASTA)	NCBI Sequence Viewer
	XP_063124788	(Get FASTA)	NCBI Sequence Viewer
	XP_063124789	(Get FASTA)	NCBI Sequence Viewer
	XP_063124790	(Get FASTA)	NCBI Sequence Viewer
	XP_063124791	(Get FASTA)	NCBI Sequence Viewer
	XP_063124792	(Get FASTA)	NCBI Sequence Viewer
	XP_063124793	(Get FASTA)	NCBI Sequence Viewer
	XP_063124794	(Get FASTA)	NCBI Sequence Viewer
	XP_063124795	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91435	(Get FASTA)	NCBI Sequence Viewer
	AAI66743	(Get FASTA)	NCBI Sequence Viewer
	EDM05757	(Get FASTA)	NCBI Sequence Viewer
	EDM05758	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006230
	ENSRNOP00000006230.5
	ENSRNOP00000084460
	ENSRNOP00000084460.1

RefSeq Acc Id:

NP_001093966 ⟸ NM_001100496

- UniProtKB:

B2RYD9 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDK
LKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQG
KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGG
LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC
FIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQ
AVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS

hide sequence

RefSeq Acc Id:	XP_008766190 ⟸ XM_008767968
- Peptide Label:	isoform X1
- UniProtKB:	B2RYD9 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDK LKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQG KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGG LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC FIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQ AVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS hide sequence

RefSeq Acc Id:	XP_017452619 ⟸ XM_017597130
- Peptide Label:	isoform X1
- UniProtKB:	B2RYD9 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDK LKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQG KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGG LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC FIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQ AVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS hide sequence

Ensembl Acc Id:

ENSRNOP00000006230 ⟸ ENSRNOT00000006230

Ensembl Acc Id:

ENSRNOP00000072808 ⟸ ENSRNOT00000077625

RefSeq Acc Id:	XP_038941524 ⟸ XM_039085596
- Peptide Label:	isoform X1
- UniProtKB:	B2RYD9 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941520 ⟸ XM_039085592
- Peptide Label:	isoform X1
- UniProtKB:	B2RYD9 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941525 ⟸ XM_039085597
- Peptide Label:	isoform X1
- UniProtKB:	B2RYD9 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941528 ⟸ XM_039085600
- Peptide Label:	isoform X1
- UniProtKB:	B2RYD9 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000084460 ⟸ ENSRNOT00000100446

RefSeq Acc Id:	XP_063124791 ⟸ XM_063268721
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124782 ⟸ XM_063268712
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124792 ⟸ XM_063268722
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124793 ⟸ XM_063268723
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124784 ⟸ XM_063268714
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124783 ⟸ XM_063268713
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124781 ⟸ XM_063268711
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124786 ⟸ XM_063268716
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124794 ⟸ XM_063268724
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124787 ⟸ XM_063268717
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124789 ⟸ XM_063268719
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124788 ⟸ XM_063268718
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124790 ⟸ XM_063268720
- Peptide Label:	isoform X1
- UniProtKB:	F7EK37 (UniProtKB/TrEMBL), A0A8I6GAF0 (UniProtKB/TrEMBL), A6HIA2 (UniProtKB/TrEMBL), B2RYD9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124795 ⟸ XM_063268725
- Peptide Label:	isoform X2

Protein Domains

BPM/SPOP BACK BTB MATH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RYD9-F1-model_v2	AlphaFold	B2RYD9	1-374	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697630

Promoter ID:

EPDNEW_R8144

Type:

initiation region

Name:

Spop_1

Description:

speckle type BTB/POZ protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	83,231,263 - 83,231,323	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311613	AgrOrtholog
BioCyc Gene	G2FUF-23542	BioCyc
Ensembl Genes	ENSRNOG00000004686	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006230	ENTREZGENE
	ENSRNOT00000006230.7	UniProtKB/TrEMBL
	ENSRNOT00000100446	ENTREZGENE
	ENSRNOT00000100446.2	UniProtKB/TrEMBL
Gene3D-CATH	6.10.250.3030	UniProtKB/TrEMBL
	6.20.250.50	UniProtKB/TrEMBL
	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A	UniProtKB/TrEMBL
	Potassium Channel Kv1.1, Chain A	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7368091	IMAGE-MGC_LOAD
	IMAGE:7938440	IMAGE-MGC_LOAD
InterPro	BACK_BPM_SPOP	UniProtKB/TrEMBL
	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	MATH	UniProtKB/TrEMBL
	SPOP_C	UniProtKB/TrEMBL
	TRAF-like	UniProtKB/TrEMBL
KEGG Report	rno:287643	UniProtKB/TrEMBL
MGC_CLONE	MGC:109643	IMAGE-MGC_LOAD
	MGC:188472	IMAGE-MGC_LOAD
NCBI Gene	287643	ENTREZGENE
PANTHER	SPECKLE-TYPE POZ PROTEIN	UniProtKB/TrEMBL
Pfam	BACK_BPM_SPOP	UniProtKB/TrEMBL
	BTB	UniProtKB/TrEMBL
	MATH_2	UniProtKB/TrEMBL
PhenoGen	Spop	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	MATH	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004686	RatGTEx
SMART	BTB	UniProtKB/TrEMBL
	MATH	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	TRAF domain-like	UniProtKB/TrEMBL
UniProt	A0A8I6GAF0	ENTREZGENE, UniProtKB/TrEMBL
	A6HIA2	ENTREZGENE, UniProtKB/TrEMBL
	A6HIA3_RAT	UniProtKB/TrEMBL
	B2RYD9	ENTREZGENE
	F7EK37	ENTREZGENE, UniProtKB/TrEMBL
	Q5BJL3_RAT	UniProtKB/TrEMBL
UniProt Secondary	B2RYD9	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Spop	speckle type BTB/POZ protein	Spop	speckle-type POZ protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Spop	speckle-type POZ protein	Spop_predicted	speckle-type POZ protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Spop_predicted	speckle-type POZ protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)