Slx9 (SLX9 ribosome biogenesis factor)

Gene: Slx9 (SLX9 ribosome biogenesis factor) Rattus norvegicus

Analyze

Symbol:

Slx9

Name:

SLX9 ribosome biogenesis factor

RGD ID:

1311257

Description:

Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus. Predicted to be part of 90S preribosome and preribosome, small subunit precursor. Orthologous to human SLX9 (SLX9 ribosome biogenesis factor); INTERACTS WITH 4,4'-sulfonyldiphenol; bisphenol A; bisphenol F.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Fam207a; family with sequence similarity 207, member A; hypothetical protein LOC294333; LOC294333; MGC94567; RGD1311257; ribosome biogenesis protein SLX9 homolog; similar to C21orf70 protein; uncharacterized protein LOC294333

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLX9 (SLX9 ribosome biogenesis factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slx9 (SLX9 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slx9 (SLX9 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLX9 (SLX9 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLX9 (SLX9 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slx9 (SLX9 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLX9 (SLX9 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLX9 (SLX9 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slx9 (SLX9 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLX9 (SLX9 ribosome biogenesis factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slx9 (SLX9 ribosome biogenesis factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fam207a (family with sequence similarity 207 member A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG16753	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	slx9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	11,114,214 - 11,147,112 (+)	NCBI		GRCr8
mRatBN7.2	20	11,114,632 - 11,147,532 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	11,114,589 - 11,147,521 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	11,814,053 - 11,844,380 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	11,175,020 - 11,205,347 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	11,646,764 - 11,677,087 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	11,863,145 - 11,896,833 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	11,863,082 - 11,896,774 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	14,030,705 - 14,064,393 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	11,504,045 - 11,536,945 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	11,504,271 - 11,537,169 (+)	NCBI
Celera	20	12,617,865 - 12,650,705 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Axenfeld-Rieger syndrome type 3 (ISO)

cataract 9 multiple types (ISO)

developmental and epileptic encephalopathy 30 (ISO)

homocystinuria (ISO)

Neurodevelopmental Disorders (ISO)

primary ciliary dyskinesia (ISO)

progressive myoclonus epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butanal (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

chlorpyrifos (ISO)

decabromodiphenyl ether (EXP)

endosulfan (EXP)

ethanol (ISO)

fenthion (ISO)

inulin (ISO)

menadione (ISO)

methapyrilene (ISO)

methidathion (ISO)

methoxychlor (EXP)

perfluorooctane-1-sulfonic acid (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

tetrachloroethene (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (IEA)

Cellular Component

90S preribosome (IEA)

nucleolus (IEA)

preribosome, small subunit precursor (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Slx9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	11,114,214 - 11,147,112 (+)	NCBI		GRCr8
mRatBN7.2	20	11,114,632 - 11,147,532 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	11,114,589 - 11,147,521 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	11,814,053 - 11,844,380 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	11,175,020 - 11,205,347 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	11,646,764 - 11,677,087 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	11,863,145 - 11,896,833 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	11,863,082 - 11,896,774 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	14,030,705 - 14,064,393 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	11,504,045 - 11,536,945 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	11,504,271 - 11,537,169 (+)	NCBI
Celera	20	12,617,865 - 12,650,705 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

SLX9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	44,939,697 - 44,976,973 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	44,940,025 - 44,976,973 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	46,359,612 - 46,396,888 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	45,184,383 - 45,221,316 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	45,184,382 - 45,221,315	NCBI
Celera	21	31,466,458 - 31,503,452 (+)	NCBI		Celera
Cytogenetic Map	21	q22.3	NCBI
HuRef	21	31,732,674 - 31,769,494 (+)	NCBI		HuRef
CHM1_1	21	45,920,555 - 45,957,484 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	43,300,445 - 43,337,689 (+)	NCBI		T2T-CHM13v2.0

Slx9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	77,322,489 - 77,352,758 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	77,322,495 - 77,351,619 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	77,486,655 - 77,516,924 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	77,486,661 - 77,515,785 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	76,949,400 - 76,978,558 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	76,930,377 - 76,959,501 (-)	NCBI		MGSCv36	mm8
Celera	10	78,528,969 - 78,558,127 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Slx9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	41,812,825 - 41,833,020 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	41,812,808 - 41,834,661 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLX9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	40,985,009 - 41,025,848 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	35,858,482 - 35,897,666 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	31,235,306 - 31,271,814 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	44,528,231 - 44,560,814 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

SLX9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	38,559,175 - 38,593,152 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	38,558,629 - 38,591,996 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	37,756,095 - 37,805,756 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	38,162,797 - 38,213,129 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	38,162,669 - 38,197,146 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	38,026,738 - 38,060,653 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	37,988,385 - 38,022,234 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	38,502,540 - 38,550,605 (+)	NCBI		UU_Cfam_GSD_1.0

Slx9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	37,841,306 - 37,901,171 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936778	1,229,862 - 1,265,471 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936778	1,225,872 - 1,264,736 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLX9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	207,560,990 - 207,588,501 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	207,560,855 - 207,588,502 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	217,492,687 - 217,520,304 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLX9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	88,652,219 - 88,703,220 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	88,652,222 - 88,690,577 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	16,829,802 - 16,882,414 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slx9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	30,485,797 - 30,507,747 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	30,484,252 - 30,506,638 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slx9
329 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	312
Count of miRNA genes:	188
Interacting mature miRNAs:	216
Transcripts:	ENSRNOT00000001640
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	4606607	17617956	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	4606607	17617956	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	6691706	17489458	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8042410	17617956	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8042410	29322208	Rat
631265	Iresp1	Immunoglobin response QTL1	8.3		blood anti-double stranded DNA antibody amount (VT:0004762)	serum anti-DNA antibody level (CMO:0001533)	20	9039719	13461775	Rat

Markers in Region

BE114994

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	11,146,448 - 11,146,630 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	11,895,750 - 11,895,931	NCBI	Rnor6.0
Rnor_5.0	20	14,063,310 - 14,063,491	UniSTS	Rnor5.0
RGSC_v3.4	20	11,535,862 - 11,536,043	UniSTS	RGSC3.4
Celera	20	12,649,622 - 12,649,803	UniSTS
RH 3.4 Map	20	153.94	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	27	28	15	19	15			73	31	34	11
Low		16	29	26		26	8	11	1	4	7		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000001640 ⟹ ENSRNOP00000001640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	11,114,589 - 11,147,521 (+)	Ensembl
Rnor_6.0 Ensembl	20	11,863,082 - 11,896,774 (+)	Ensembl

RefSeq Acc Id:

NM_001008307 ⟹ NP_001008308

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	11,114,214 - 11,147,112 (+)	NCBI
mRatBN7.2	20	11,114,632 - 11,147,532 (+)	NCBI
Rnor_6.0	20	11,863,145 - 11,896,833 (+)	NCBI
Rnor_5.0	20	14,030,705 - 14,064,393 (+)	NCBI
RGSC_v3.4	20	11,504,045 - 11,536,945 (+)	RGD
Celera	20	12,617,865 - 12,650,705 (+)	RGD

Sequence:

show sequence

CGGCGTTGCTAGCAGGCAGAAACCTCTTGCAAAGATGGGGAAAGTGAGGGCGCTGCGGGCTCGT
GTGCACCGGGCAGCCGTGAGGCCCGACAGGGAGGCTACACCCAGCGCTGTACCCCGCGCCTTGG
AGCCGGCCCTACCACAAGCCTCGGCGGGCGGAGCGGGGTCGAAGGACTGGGCATTTGTTCACAA
TGACATCTTCGCCAGGACCCAGATAGACCCTAGTGCTTTGGTGCAGAGGCTGGAGCTGGACCAG
AAGAGTGTGGTGTCCCTAAAGAGAGGTGCAGAGCCAAAGGCCATTGTGCCTAAGAAGGAAAAGC
TGAAGCTTCGCCGTGAGCGATGGCTACAGAAAATTGAAGCCATAAAGCTGGCAGATCAGAAGCT
CAGGGAGGAACGGAGGCGCAGGGCCACGGTGGTGGTAGGTGACCTGCACCCCCTGAGAGATGCC
CTACCTGAGCTGCAGGAGCTGGAGGCCGGCCGCCAGCAGCAGCAACCCCGACGCAGGGGGACCA
GCAAGCCCAGGCCAGTGGAGCTTAGCCGGATGAGCACAGCCCAGAGACAGCAGCTTCTTGAGGA
AGAGAGGACCCGGTTTCAGAAGCTGCTGGCCAGCCCAGCCTACAGAGCCAGTCCCCTGCTGGCT
ATCGGGCAGCAGCTGGCACACCAGATGCAGCTGGAAGGTGGCAAACAGCTCTGACCCAGGACAG
TGGGTGCTGTGAGATCCAGAAGACTCAGTGTGGGTGGAGGCCACAGCTCTGGAATCCTGCCCTG
TAACTGCACGGCCACCTAGCCGGTCTTGAAACCTCGGGCAGGGGAAGGAGGAGCTACCGCTGAG
GACAAATAAAACGACTTATGGACTACGCTGGAGCCCATCTGTGGCTTCACTTCCACTTAGAGCC
AGCCACTCCTGCATTTCCAAGGCTCAGCTGACCCTGGGATGGCTGTCCTGGTTCTCTGCAGAAC
AAGCCCAGGGTCCCCAGCTAGGGGCCAGAGTTGGGGTGGTTGCTCTTGTAGGGATCACAAGGGC
TACACAAGTGTGAAACTAGAGGCCTGGCAAGGAGCTCGATTCCGAAAGTCCCTGAGGCCTTAGC
ACTCCTTCCCAGCTCCGACTGGGGTCCTGGTCACAGCAGGGCACTCTGCCGGCCACTGTGCTTC
TCACACCATTGCTTTCCACCAAGCCACAGCTCAGGGCTCGGAGCTCTCGGCCCAGGCTACTCAC
TTACTTGTCCTGCTACAGTCAGAGAAGCAGGAGGCAGGACAGCCCTGGCCCAGTAGTCTCTTGG
CTGGATGGCAAGATTGACCTGTGTCAGACACTAGTGGGTTCTCCGGGTGAGGGCAGTACCCACG
GGACTCACAGCTCACACTGACACATGTCCCACTTTGCATTTGGGATGTGCTTATGGTACTGCTT
ACCCCCAAAGGTGCTCCCTAGCCTTTTACAGGGGCCCATAGCTCCCCAGCCCCTGTGAGTGGGG
ACAGGGCAGAACAGGTGAGGCTCCCGGGATTGGTATGGACACCTAGGGCACTTGGTGAATGAAA
GTGGGTAAGACCGAATAGGCCTAAACTGCATGAAGCAGAGGCAGGCAGATCTCTTGAGTTCAAG
ACCAGCCTGGTCTACAGAGCAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGC
AAAAAAAAACAAAAAAAAAAAACCAAACACACACACAAACAGATAAATAAAATAATAATAAAAA
GCAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001008308	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83697	(Get FASTA)	NCBI Sequence Viewer
	EDL97103	(Get FASTA)	NCBI Sequence Viewer
	EDL97104	(Get FASTA)	NCBI Sequence Viewer
	EDL97105	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001640
	ENSRNOP00000001640.3

RefSeq Acc Id:

NP_001008308 ⟸ NM_001008307

- UniProtKB:

Q5XII4 (UniProtKB/TrEMBL), F7F4R7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGKVRALRARVHRAAVRPDREATPSAVPRALEPALPQASAGGAGSKDWAFVHNDIFARTQIDPS
ALVQRLELDQKSVVSLKRGAEPKAIVPKKEKLKLRRERWLQKIEAIKLADQKLREERRRRATVV
VGDLHPLRDALPELQELEAGRQQQQPRRRGTSKPRPVELSRMSTAQRQQLLEEERTRFQKLLAS
PAYRASPLLAIGQQLAHQMQLEGGKQL

hide sequence

RefSeq Acc Id:

ENSRNOP00000001640 ⟸ ENSRNOT00000001640

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XII4-F1-model_v2	AlphaFold	Q5XII4	1-219	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701506

Promoter ID:

EPDNEW_R12030

Type:

multiple initiation site

Name:

Fam207a_1

Description:

family with sequence similarity 207, member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	11,863,125 - 11,863,185	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311257	AgrOrtholog
BioCyc Gene	G2FUF-4235	BioCyc
Ensembl Genes	ENSRNOG00000001225	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001640	ENTREZGENE
	ENSRNOT00000001640.7	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7189806	IMAGE-MGC_LOAD
InterPro	Slx9-like	UniProtKB/TrEMBL
KEGG Report	rno:294333	UniProtKB/TrEMBL
MGC_CLONE	MGC:94567	IMAGE-MGC_LOAD
NCBI Gene	294333	ENTREZGENE
PANTHER	PROTEIN FAM207A	UniProtKB/TrEMBL
	PROTEIN FAM207A	UniProtKB/TrEMBL
Pfam	SLX9	UniProtKB/TrEMBL
PhenoGen	Slx9	PhenoGen
RatGTEx	ENSRNOG00000001225	RatGTEx
UniProt	F7F4R7	ENTREZGENE, UniProtKB/TrEMBL
	Q5XII4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-06-07	Slx9	SLX9 ribosome biogenesis factor	Fam207a	family with sequence similarity 207, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-09-02	Fam207a	family with sequence similarity 207, member A	RGD1311257	similar to C21orf70 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1311257	similar to C21orf70 protein	RGD1311257_predicted	similar to C21orf70 protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1311257_predicted	similar to C21orf70 protein (predicted)	LOC294333_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC294333_predicted	similar to C21orf70 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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