SLX9 (SLX9 ribosome biogenesis factor) - Rat Genome Database

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Gene: SLX9 (SLX9 ribosome biogenesis factor) Canis lupus familiaris
Analyze
Symbol: SLX9
Name: SLX9 ribosome biogenesis factor
RGD ID: 12318032
Description: INVOLVED IN maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (inferred); ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog); FOUND IN 90S preribosome (inferred); nucleolus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAM207A; family with sequence similarity 207 member A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13138,559,175 - 38,593,152 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3138,558,629 - 38,591,996 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3137,756,095 - 37,805,756 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03138,162,797 - 38,213,129 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3138,162,669 - 38,197,146 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13138,026,738 - 38,060,653 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03137,988,385 - 38,022,234 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03138,502,540 - 38,550,605 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SLX9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13138,559,175 - 38,593,152 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3138,558,629 - 38,591,996 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3137,756,095 - 37,805,756 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03138,162,797 - 38,213,129 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3138,162,669 - 38,197,146 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13138,026,738 - 38,060,653 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03137,988,385 - 38,022,234 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03138,502,540 - 38,550,605 (+)NCBIUU_Cfam_GSD_1.0
SLX9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,939,697 - 44,976,973 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,940,025 - 44,976,973 (+)EnsemblGRCh38hg38GRCh38
GRCh372146,359,612 - 46,396,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362145,184,383 - 45,221,316 (+)NCBINCBI36Build 36hg18NCBI36
Build 342145,184,382 - 45,221,315NCBI
Celera2131,466,458 - 31,503,452 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2131,732,674 - 31,769,494 (+)NCBIHuRef
CHM1_12145,920,555 - 45,957,484 (+)NCBICHM1_1
T2T-CHM13v2.02143,300,445 - 43,337,689 (+)NCBIT2T-CHM13v2.0
Slx9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,322,489 - 77,352,758 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,322,495 - 77,351,619 (-)EnsemblGRCm39 Ensembl
GRCm381077,486,655 - 77,516,924 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,486,661 - 77,515,785 (-)EnsemblGRCm38mm10GRCm38
MGSCv371076,949,400 - 76,978,558 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361076,930,377 - 76,959,501 (-)NCBIMGSCv36mm8
Celera1078,528,969 - 78,558,127 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Slx9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82011,114,214 - 11,147,112 (+)NCBIGRCr8
mRatBN7.22011,114,632 - 11,147,532 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2011,114,589 - 11,147,521 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2011,814,053 - 11,844,380 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02011,175,020 - 11,205,347 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02011,646,764 - 11,677,087 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02011,863,145 - 11,896,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2011,863,082 - 11,896,774 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02014,030,705 - 14,064,393 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42011,504,045 - 11,536,945 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12011,504,271 - 11,537,169 (+)NCBI
Celera2012,617,865 - 12,650,705 (+)NCBICelera
Cytogenetic Map20p12NCBI
Slx9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540741,812,825 - 41,833,020 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540741,812,808 - 41,834,661 (+)NCBIChiLan1.0ChiLan1.0
SLX9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22240,985,009 - 41,025,848 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12135,858,482 - 35,897,666 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02131,235,306 - 31,271,814 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12144,528,231 - 44,560,814 (+)NCBIpanpan1.1PanPan1.1panPan2
Slx9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497137,841,306 - 37,901,171 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367781,229,862 - 1,265,471 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367781,225,872 - 1,264,736 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLX9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13207,560,990 - 207,588,501 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113207,560,855 - 207,588,502 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213217,492,687 - 217,520,304 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLX9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1288,652,219 - 88,703,220 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl288,652,222 - 88,690,577 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605416,829,802 - 16,882,414 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slx9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474530,485,797 - 30,507,747 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474530,484,252 - 30,506,638 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLX9
845 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 5 12 8 10 6
Low 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005638979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014109803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005305533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005316657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005382469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000017582   ⟹   ENSCAFP00000016279
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3138,558,629 - 38,591,996 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845038594   ⟹   ENSCAFP00845030211
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3138,162,669 - 38,197,146 (+)Ensembl
RefSeq Acc Id: XM_005638979   ⟹   XP_005639036
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13138,559,175 - 38,593,152 (+)NCBI
Dog10K_Boxer_Tasha3137,757,750 - 37,791,720 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014109803   ⟹   XP_013965278
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13138,559,175 - 38,593,152 (+)NCBI
Dog10K_Boxer_Tasha3137,757,750 - 37,791,720 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022413108   ⟹   XP_022268816
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13138,559,175 - 38,593,152 (+)NCBI
Dog10K_Boxer_Tasha3137,757,735 - 37,791,720 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038443695   ⟹   XP_038299623
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03138,164,446 - 38,198,357 (+)NCBI
RefSeq Acc Id: XM_038443696   ⟹   XP_038299624
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03138,164,446 - 38,198,357 (+)NCBI
RefSeq Acc Id: XM_038443697   ⟹   XP_038299625
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03138,173,177 - 38,198,357 (+)NCBI
RefSeq Acc Id: XM_038443698   ⟹   XP_038299626
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03138,162,797 - 38,198,357 (+)NCBI
RefSeq Acc Id: XM_038443699   ⟹   XP_038299627
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03138,164,431 - 38,198,357 (+)NCBI
RefSeq Acc Id: XM_038443700   ⟹   XP_038299628
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03138,173,759 - 38,198,357 (+)NCBI
RefSeq Acc Id: XM_038461778   ⟹   XP_038317706
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3137,766,511 - 37,791,720 (+)NCBI
RefSeq Acc Id: XM_038461779   ⟹   XP_038317707
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3137,756,095 - 37,791,720 (+)NCBI
RefSeq Acc Id: XM_038461780   ⟹   XP_038317708
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3137,767,094 - 37,791,720 (+)NCBI
RefSeq Acc Id: XM_038518100   ⟹   XP_038374028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13138,026,753 - 38,060,653 (+)NCBI
RefSeq Acc Id: XM_038518101   ⟹   XP_038374029
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13138,026,753 - 38,060,653 (+)NCBI
RefSeq Acc Id: XM_038518102   ⟹   XP_038374030
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13138,035,483 - 38,060,653 (+)NCBI
RefSeq Acc Id: XM_038518103   ⟹   XP_038374031
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13138,026,738 - 38,060,653 (+)NCBI
RefSeq Acc Id: XM_038518104   ⟹   XP_038374032
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13138,036,065 - 38,060,653 (+)NCBI
RefSeq Acc Id: XM_038581656   ⟹   XP_038437584
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03138,502,540 - 38,536,567 (+)NCBI
RefSeq Acc Id: XM_038581657   ⟹   XP_038437585
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03138,502,540 - 38,536,567 (+)NCBI
RefSeq Acc Id: XM_038581658   ⟹   XP_038437586
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03138,511,336 - 38,536,567 (+)NCBI
RefSeq Acc Id: XM_038581659   ⟹   XP_038437587
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03138,511,919 - 38,536,567 (+)NCBI
RefSeq Acc Id: XM_038646061   ⟹   XP_038501989
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03137,988,385 - 38,022,234 (+)NCBI
RefSeq Acc Id: XM_038646062   ⟹   XP_038501990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03137,988,385 - 38,022,234 (+)NCBI
RefSeq Acc Id: XM_038646063   ⟹   XP_038501991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03137,997,027 - 38,022,234 (+)NCBI
RefSeq Acc Id: XM_038646064   ⟹   XP_038501992
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03137,997,609 - 38,022,234 (+)NCBI
RefSeq Acc Id: XR_005305533
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03138,164,446 - 38,213,129 (+)NCBI
RefSeq Acc Id: XR_005316657
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3137,757,750 - 37,805,756 (+)NCBI
RefSeq Acc Id: XR_005382469
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03138,502,540 - 38,550,605 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005639036 (Get FASTA)   NCBI Sequence Viewer  
  XP_013965278 (Get FASTA)   NCBI Sequence Viewer  
  XP_022268816 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299623 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299624 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299625 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299626 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299627 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299628 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317706 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317707 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317708 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374028 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374029 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374030 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374031 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374032 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437584 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437585 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437586 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437587 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501989 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501990 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501991 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501992 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000016279.5
  ENSCAFP00000073496.1
  ENSCAFP00030040364.1
  ENSCAFP00030040399.1
  ENSCAFP00030040411.1
  ENSCAFP00040027845.1
  ENSCAFP00040027931.1
  ENSCAFP00040028010.1
  ENSCAFP00845030211
  ENSCAFP00845030211.1
RefSeq Acc Id: XP_013965278   ⟸   XM_014109803
- Peptide Label: isoform X4
- UniProtKB: A0A8C0RTA5 (UniProtKB/TrEMBL),   A0A8P0SFY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005639036   ⟸   XM_005638979
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PEE9 (UniProtKB/TrEMBL),   A0A8C0RTA5 (UniProtKB/TrEMBL),   A0A8P0SFY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022268816   ⟸   XM_022413108
- Peptide Label: isoform X2
- UniProtKB: A0A8C0R445 (UniProtKB/TrEMBL),   A0A8C0SWL7 (UniProtKB/TrEMBL),   A0A8P0TSK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000016279   ⟸   ENSCAFT00000017582
RefSeq Acc Id: XP_038374031   ⟸   XM_038518103
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038374028   ⟸   XM_038518100
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038374029   ⟸   XM_038518101
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038374030   ⟸   XM_038518102
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038374032   ⟸   XM_038518104
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038501989   ⟸   XM_038646061
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038501990   ⟸   XM_038646062
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038501991   ⟸   XM_038646063
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038501992   ⟸   XM_038646064
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038299626   ⟸   XM_038443698
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PI61 (UniProtKB/TrEMBL),   A0A8C0SWL7 (UniProtKB/TrEMBL),   A0A8P0TSK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299627   ⟸   XM_038443699
- Peptide Label: isoform X2
- UniProtKB: A0A8C0R445 (UniProtKB/TrEMBL),   A0A8C0SWL7 (UniProtKB/TrEMBL),   A0A8P0TSK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299623   ⟸   XM_038443695
- Peptide Label: isoform X3
- UniProtKB: A0A8C0SX95 (UniProtKB/TrEMBL),   A0A8C0SX67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299624   ⟸   XM_038443696
- Peptide Label: isoform X4
- UniProtKB: A0A8C0SX67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299625   ⟸   XM_038443697
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038299628   ⟸   XM_038443700
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038317707   ⟸   XM_038461779
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PI61 (UniProtKB/TrEMBL),   A0A8C0SWL7 (UniProtKB/TrEMBL),   A0A8P0TSK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317706   ⟸   XM_038461778
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038317708   ⟸   XM_038461780
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038437584   ⟸   XM_038581656
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PEE9 (UniProtKB/TrEMBL),   A0A8C0RTA5 (UniProtKB/TrEMBL),   A0A8P0SFY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437585   ⟸   XM_038581657
- Peptide Label: isoform X4
- UniProtKB: A0A8C0RTA5 (UniProtKB/TrEMBL),   A0A8P0SFY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437586   ⟸   XM_038581658
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038437587   ⟸   XM_038581659
- Peptide Label: isoform X6
RefSeq Acc Id: ENSCAFP00845030211   ⟸   ENSCAFT00845038594

Promoters
RGD ID:13688665
Promoter ID:EPDNEW_C6733
Type:initiation region
Name:FAM207A_1
Description:family with sequence similarity 207 member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13138,559,134 - 38,559,194EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011049 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025042 UniProtKB/TrEMBL
  ENSCAFG00040017245 UniProtKB/TrEMBL
  ENSCAFG00845021885 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000017582.5 UniProtKB/TrEMBL
  ENSCAFT00000110091.1 UniProtKB/TrEMBL
  ENSCAFT00030046200.1 UniProtKB/TrEMBL
  ENSCAFT00030046237.1 UniProtKB/TrEMBL
  ENSCAFT00030046250.1 UniProtKB/TrEMBL
  ENSCAFT00040032027.1 UniProtKB/TrEMBL
  ENSCAFT00040032126.1 UniProtKB/TrEMBL
  ENSCAFT00040032212.1 UniProtKB/TrEMBL
  ENSCAFT00845038594 ENTREZGENE
  ENSCAFT00845038594.1 UniProtKB/TrEMBL
InterPro Slx9-like UniProtKB/TrEMBL
KEGG Report cfa:611610 UniProtKB/TrEMBL
NCBI Gene FAM207A ENTREZGENE
PANTHER PROTEIN FAM207A UniProtKB/TrEMBL
  PROTEIN FAM207A UniProtKB/TrEMBL
Pfam SLX9 UniProtKB/TrEMBL
UniProt A0A8C0PEE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R445 ENTREZGENE
  A0A8C0RTA5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SWL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SX67 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SX95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PI61 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SFY4 ENTREZGENE
  A0A8P0TSK3 ENTREZGENE
UniProt Secondary A0A8P0SFY4 UniProtKB/TrEMBL
  A0A8P0TSK3 UniProtKB/TrEMBL
VGNC ID VGNC:40651 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-05-24 SLX9  SLX9 ribosome biogenesis factor  FAM207A  family with sequence similarity 207 member A  Symbol and/or name change 19259463 PROVISIONAL