Slx9 (SLX9 ribosome biogenesis factor) - Rat Genome Database

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Gene: Slx9 (SLX9 ribosome biogenesis factor) Heterocephalus glaber
Analyze
Symbol: Slx9
Name: SLX9 ribosome biogenesis factor (Ensembl:family with sequence similarity 207 member A)
RGD ID: 18908342
Description: INVOLVED IN maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (inferred); ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog); FOUND IN 90S preribosome (inferred); nucleolus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam207a; family with sequence similarity 207 member A; protein FAM207A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474530,485,797 - 30,507,747 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474530,484,252 - 30,506,638 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Slx9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474530,485,797 - 30,507,747 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474530,484,252 - 30,506,638 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLX9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,939,697 - 44,976,973 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,940,025 - 44,976,973 (+)EnsemblGRCh38hg38GRCh38
GRCh372146,359,612 - 46,396,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362145,184,383 - 45,221,316 (+)NCBINCBI36Build 36hg18NCBI36
Build 342145,184,382 - 45,221,315NCBI
Celera2131,466,458 - 31,503,452 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2131,732,674 - 31,769,494 (+)NCBIHuRef
CHM1_12145,920,555 - 45,957,484 (+)NCBICHM1_1
T2T-CHM13v2.02143,300,445 - 43,337,689 (+)NCBIT2T-CHM13v2.0
Slx9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,322,489 - 77,352,758 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,322,495 - 77,351,619 (-)EnsemblGRCm39 Ensembl
GRCm381077,486,655 - 77,516,924 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,486,661 - 77,515,785 (-)EnsemblGRCm38mm10GRCm38
MGSCv371076,949,400 - 76,978,558 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361076,930,377 - 76,959,501 (-)NCBIMGSCv36mm8
Celera1078,528,969 - 78,558,127 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Slx9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82011,114,214 - 11,147,112 (+)NCBIGRCr8
mRatBN7.22011,114,632 - 11,147,532 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2011,114,589 - 11,147,521 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2011,814,053 - 11,844,380 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02011,175,020 - 11,205,347 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02011,646,764 - 11,677,087 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02011,863,145 - 11,896,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2011,863,082 - 11,896,774 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02014,030,705 - 14,064,393 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42011,504,045 - 11,536,945 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12011,504,271 - 11,537,169 (+)NCBI
Celera2012,617,865 - 12,650,705 (+)NCBICelera
Cytogenetic Map20p12NCBI
Slx9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540741,812,825 - 41,833,020 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540741,812,808 - 41,834,661 (+)NCBIChiLan1.0ChiLan1.0
SLX9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22240,985,009 - 41,025,848 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12135,858,482 - 35,897,666 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02131,235,306 - 31,271,814 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12144,528,231 - 44,560,814 (+)NCBIpanpan1.1PanPan1.1panPan2
SLX9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13138,559,175 - 38,593,152 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3138,558,629 - 38,591,996 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3137,756,095 - 37,805,756 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03138,162,797 - 38,213,129 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3138,162,669 - 38,197,146 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13138,026,738 - 38,060,653 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03137,988,385 - 38,022,234 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03138,502,540 - 38,550,605 (+)NCBIUU_Cfam_GSD_1.0
Slx9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497137,841,306 - 37,901,171 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367781,229,862 - 1,265,471 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367781,225,872 - 1,264,736 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLX9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13207,560,990 - 207,588,501 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113207,560,855 - 207,588,502 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213217,492,687 - 217,520,304 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLX9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1288,652,219 - 88,703,220 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl288,652,222 - 88,690,577 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605416,829,802 - 16,882,414 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006905   ⟹   ENSHGLP00000006821
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474530,485,797 - 30,507,747 (+)Ensembl
RefSeq Acc Id: XM_004842513   ⟹   XP_004842570
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474530,484,254 - 30,506,638 (+)NCBI
RefSeq Acc Id: XM_013071381   ⟹   XP_012926835
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474530,484,252 - 30,506,638 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004842570 (Get FASTA)   NCBI Sequence Viewer  
  XP_012926835 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10471 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012926835   ⟸   XM_013071381
- Peptide Label: isoform X2
- UniProtKB: G5BMG0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004842570   ⟸   XM_004842513
- Peptide Label: isoform X1
- UniProtKB: G5BMG0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006821   ⟸   ENSHGLT00000006905


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004978 Ensembl
InterPro Slx9-like UniProtKB/TrEMBL
NCBI Gene Fam207a ENTREZGENE
PANTHER PROTEIN FAM207A UniProtKB/TrEMBL
  PROTEIN FAM207A UniProtKB/TrEMBL
Pfam SLX9 UniProtKB/TrEMBL
UniProt G5BMG0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-07-06 Slx9  SLX9 ribosome biogenesis factor  Fam207a  family with sequence similarity 207 member A  Symbol and/or name change 5135510 APPROVED