Advanced Search (OLGA)

Gene: Cdc14b (cell division cycle 14B) Rattus norvegicus

Analyze

Symbol:

Cdc14b

Name:

cell division cycle 14B

RGD ID:

1311163

Description:

Predicted to enable protein serine/threonine phosphatase activity and protein tyrosine phosphatase activity. Predicted to be involved in cilium assembly; microtubule cytoskeleton organization; and regulation of cell cycle process. Predicted to be located in nucleoplasm. Predicted to be active in cytoplasm; nucleolus; and spindle. Orthologous to several human genes including CDC14B (cell division cycle 14B); PARTICIPATES IN RNA polymerase II transcription pathway; cell cycle pathway, mitotic; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CDC14 cell division cycle 14 homolog B; CDC14 cell division cycle 14 homolog B (S. cerevisiae); dual specificity protein phosphatase CDC14B; LOC361195

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDC14B (cell division cycle 14B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Cdc14b (CDC14 cell division cycle 14B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdc14b (cell division cycle 14B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDC14B (cell division cycle 14B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDC14B (cell division cycle 14B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdc14b (cell division cycle 14B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDC14B (cell division cycle 14B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDC14B (cell division cycle 14B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdc14b (cell division cycle 14B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cdc14b (cell division cycle 14B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CDC14C (cell division cycle 14C)	HGNC	Ensembl, OrthoDB, Panther
Homo sapiens (human):	SMTN (smoothelin)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CDC14B (cell division cycle 14B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdc14b (CDC14 cell division cycle 14B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CDC14C (cell division cycle 14C)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	cdc14b (cell division cycle 14B)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdc14b (cell division cycle 14B)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	CDC14	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CDC14	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cdc-14	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cdc-14	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	cdc14	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	cdc14	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdc14b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdc14b	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	850,272 - 938,972 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	850,390 - 971,164 (+)	Ensembl				GRCr8
mRatBN7.2	17	844,686 - 934,787 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	844,685 - 933,235 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	863,396 - 946,159 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	2,405,971 - 2,488,735 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	860,819 - 943,581 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	1,709,703 - 1,797,732 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	1,703,943 - 1,797,750 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	1,699,259 - 1,787,005 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	6,371,204 - 6,454,460 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	1,589,728 - 1,671,876 (-)	NCBI		Celera
RGSC_v3.1	17	6,397,503 - 6,451,948 (+)	NCBI
Cytogenetic Map	17	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Premature Aging (ISO)

renal cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(+/-)-Aegeline (ISO)

(1->4)-beta-D-glucan (ISO)

(RS)-coclaurine (ISO)

(RS)-norcoclaurine (ISO)

(S)-coclaurine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methoxyethanol (EXP)

3,3',4,4',5-pentachlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

4-nitrophenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

bisphenol F (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

calyculin A (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

chrysene (ISO)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

coumestrol (ISO)

curcumin (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

folic acid (ISO)

FR900359 (ISO)

GW 3965 (ISO)

isotretinoin (ISO)

leflunomide (ISO)

melphalan (ISO)

menadione (ISO)

mercury dibromide (ISO)

methimazole (EXP)

methotrexate (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

methylseleninic acid (ISO)

okadaic acid (ISO)

p-chloromercuribenzoic acid (ISO)

paclitaxel (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

propiconazole (ISO)

rotenone (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sulfadimethoxine (EXP)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

vitamin E (ISO)

yohimbine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cilium assembly (IBA)

microtubule cytoskeleton organization (IBA)

mitotic G2 DNA damage checkpoint signaling (ISO)

positive regulation of cytokinesis (IBA)

positive regulation of ubiquitin protein ligase activity (ISO)

protein dephosphorylation (ISO)

regulation of exit from mitosis (IBA)

Cellular Component

cytoplasm (IBA)

mitotic spindle (IBA)

nucleolus (IBA,ISO)

nucleoplasm (ISO)

nucleus (ISO)

spindle pole (IBA)

Molecular Function

hydrolase activity (IEA)

phosphoprotein phosphatase activity (IEA)

protein binding (ISO)

protein serine/threonine phosphatase activity (IBA,IEA,ISO)

protein tyrosine phosphatase activity (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cell cycle pathway, mitotic (IEA)

RNA polymerase II transcription pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Updating the RNA polymerase CTD code: adding gene-specific layers.	Egloff S, etal., Trends Genet. 2012 Jul;28(7):333-41. doi: 10.1016/j.tig.2012.03.007. Epub 2012 May 21.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	The writers, readers, and functions of the RNA polymerase II C-terminal domain code.	Jeronimo C, etal., Chem Rev. 2013 Nov 13;113(11):8491-522. doi: 10.1021/cr4001397. Epub 2013 Jul 10.
5.	Loss of CDC14B expression in clear cell renal cell carcinoma: meta-analysis of microarray data sets.	Kim Y, etal., Am J Clin Pathol. 2014 Apr;141(4):551-8. doi: 10.1309/AJCP4PE4JPSRGBQS.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation
10.	Early-onset aging and defective DNA damage response in Cdc14b-deficient mice.	Wei Z, etal., Mol Cell Biol. 2011 Apr;31(7):1470-7. doi: 10.1128/MCB.01330-10. Epub 2011 Jan 24.

Additional References at PubMed

PMID:9367992	PMID:18662541

Genomics

Comparative Map Data

Cdc14b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	850,272 - 938,972 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	850,390 - 971,164 (+)	Ensembl				GRCr8
mRatBN7.2	17	844,686 - 934,787 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	844,685 - 933,235 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	863,396 - 946,159 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	2,405,971 - 2,488,735 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	860,819 - 943,581 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	1,709,703 - 1,797,732 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	1,703,943 - 1,797,750 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	1,699,259 - 1,787,005 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	6,371,204 - 6,454,460 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	1,589,728 - 1,671,876 (-)	NCBI		Celera
RGSC_v3.1	17	6,397,503 - 6,451,948 (+)	NCBI
Cytogenetic Map	17	p14	NCBI

CDC14B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	96,490,939 - 96,619,843 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	96,490,241 - 96,619,855 (-)	Ensembl			hg38	GRCh38
GRCh37	9	99,262,390 - 99,382,125 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	98,302,216 - 98,421,933 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	96,332,077 - 96,461,667	NCBI
Celera	9	69,703,970 - 69,823,685 (-)	NCBI		Celera
Cytogenetic Map	9	q22.32-q22.33	NCBI
HuRef	9	68,873,293 - 68,940,865 (-)	NCBI		HuRef
CHM1_1	9	99,409,222 - 99,528,933 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	108,663,606 - 108,791,618 (-)	NCBI		T2T-CHM13v2.0

Cdc14b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	64,337,085 - 64,423,670 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	64,337,082 - 64,423,104 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	64,192,545 - 64,274,988 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	64,189,268 - 64,275,290 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	64,293,853 - 64,376,296 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	64,204,559 - 64,284,140 (-)	NCBI		MGSCv36	mm8
Celera	13	65,855,813 - 65,939,623 (-)	NCBI		Celera
Cytogenetic Map	13	B3	NCBI
cM Map	13	33.26	NCBI

Cdc14b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	23,303,250 - 23,322,493 (+)	Ensembl
ChiLan1.0 Ensembl	NW_004955422	23,383,270 - 23,441,323 (+)	Ensembl
ChiLan1.0	NW_004955422	23,303,472 - 23,445,785 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDC14B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	42,829,615 - 42,951,928 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	42,831,971 - 42,954,311 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	67,596,037 - 67,715,668 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	95,717,715 - 95,784,114 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

CDC14B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	70,232,932 - 70,335,950 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	70,232,947 - 70,335,943 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	70,996,105 - 71,099,112 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	70,532,035 - 70,635,025 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	70,532,050 - 70,635,018 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	70,345,666 - 70,448,290 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	70,108,595 - 70,211,414 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	70,819,771 - 70,922,450 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cdc14b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	6,210,303 - 6,348,193 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	442,814 - 482,299 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936487	554,611 - 564,782 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	430,449 - 482,517 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDC14B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	10	25,471,976 - 25,590,022 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	29,550,676 - 29,666,345 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDC14B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	106,520,152 - 106,645,468 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	106,572,015 - 106,633,316 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	94,918,039 - 95,044,036 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdc14b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	17,942,049 - 18,040,542 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624753	17,941,852 - 18,040,542 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cdc14b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	75,281,881 - 75,360,530 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cdc14b
145 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	489
Count of miRNA genes:	257
Interacting mature miRNAs:	330
Transcripts:	ENSRNOT00000033017
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31706603	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	1	36045694	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	43999106	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	43999106	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	43999106	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)	17	1	21499218	Rat
1549900	Iddm20	Insulin dependent diabetes mellitus QTL 20	3.7		pancreas integrity trait (VT:0010560)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	17	1	22181410	Rat
9590316	Scort21	Serum corticosterone level QTL 21	4.75	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	1	22877318	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	38037084	Rat

Markers in Region

D17Got231

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	17	870,276 - 870,559 (+)	Marker Load Pipeline
mRatBN7.2	17	864,552 - 864,835 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	1,777,624 - 1,777,906	NCBI	Rnor6.0
Rnor_5.0	17	1,767,180 - 1,767,462	UniSTS	Rnor5.0
RGSC_v3.4	17	6,390,915 - 6,391,197	UniSTS	RGSC3.4
Celera	17	1,651,890 - 1,652,172	UniSTS
Cytogenetic Map	17	p14	UniSTS

D17Got227

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	864,699 - 864,831 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	1,777,628 - 1,777,759	NCBI	Rnor6.0
Rnor_5.0	17	1,767,184 - 1,767,315	UniSTS	Rnor5.0
RGSC_v3.4	17	6,391,062 - 6,391,193	UniSTS	RGSC3.4
Celera	17	1,651,894 - 1,652,025	UniSTS
Cytogenetic Map	17	p14	UniSTS

BE103190

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	869,293 - 869,464 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	1,772,994 - 1,773,164	NCBI	Rnor6.0
Rnor_5.0	17	1,762,550 - 1,762,720	UniSTS	Rnor5.0
RGSC_v3.4	17	6,395,656 - 6,395,826	UniSTS	RGSC3.4
Celera	17	1,647,261 - 1,647,431	UniSTS
RH 3.4 Map	17	16.0	UniSTS
Cytogenetic Map	17	p14	UniSTS

RH139701

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	17	912,738 - 913,273 (+)	Marker Load Pipeline
mRatBN7.2	17	907,016 - 907,551 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	1,729,644 - 1,730,178	NCBI	Rnor6.0
Rnor_5.0	17	1,719,200 - 1,719,734	UniSTS	Rnor5.0
RGSC_v3.4	17	6,433,985 - 6,434,519	UniSTS	RGSC3.4
Celera	17	1,609,669 - 1,610,203	UniSTS
RH 3.4 Map	17	16.0	UniSTS
Cytogenetic Map	17	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000033017 ⟹ ENSRNOP00000038515

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	850,438 - 932,817 (+)	Ensembl
mRatBN7.2 Ensembl	17	844,731 - 927,479 (+)	Ensembl
Rnor_6.0 Ensembl	17	1,709,703 - 1,797,732 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079742 ⟹ ENSRNOP00000074320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	850,390 - 938,968 (+)	Ensembl
mRatBN7.2 Ensembl	17	844,731 - 933,235 (+)	Ensembl
Rnor_6.0 Ensembl	17	1,703,943 - 1,797,750 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095758 ⟹ ENSRNOP00000079866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	850,390 - 932,817 (+)	Ensembl
mRatBN7.2 Ensembl	17	844,685 - 926,905 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105267 ⟹ ENSRNOP00000094659

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	850,438 - 971,164 (+)	Ensembl
mRatBN7.2 Ensembl	17	844,731 - 928,032 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114178 ⟹ ENSRNOP00000077998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	850,438 - 935,596 (+)	Ensembl
mRatBN7.2 Ensembl	17	844,731 - 928,032 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119245 ⟹ ENSRNOP00000097799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	850,390 - 923,342 (+)	Ensembl
mRatBN7.2 Ensembl	17	844,731 - 932,139 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119773 ⟹ ENSRNOP00000085712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	850,438 - 920,062 (+)	Ensembl
mRatBN7.2 Ensembl	17	844,731 - 922,270 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124350 ⟹ ENSRNOP00000101802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	850,412 - 935,596 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000131409 ⟹ ENSRNOP00000100855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	850,390 - 935,596 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135078 ⟹ ENSRNOP00000111650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	850,390 - 935,596 (+)	Ensembl

RefSeq Acc Id:

NM_001108404 ⟹ NP_001101874

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,412 - 935,596 (+)	NCBI
mRatBN7.2	17	844,686 - 929,861 (+)	NCBI
Rnor_6.0	17	1,709,703 - 1,797,732 (-)	NCBI
Rnor_5.0	17	1,699,259 - 1,787,005 (-)	NCBI
RGSC_v3.4	17	6,371,204 - 6,454,460 (+)	RGD
Celera	17	1,589,728 - 1,671,876 (-)	RGD

Sequence:

show sequence

CCGCGGCCCGCTGAGCTCGGACGCCCCGGCAGCAGCGTCCCAGGGAGCGCGCGCTTTGCTCCAG
CCACCGGCCAGCGCTGTGGGGCCCCTGGGACGCGGGCAGCGGGAGACGCAGCGCGAGGACCCGG
GCCGGGTTGCCGGGCCATGGTCGCGGTCCCCTGACGGGCCGCGGCCGCCTCCATGAAGCGTAAG
AGCGAGCGGCGCTCGGCTTGGGCCACCGCGCCCCCCTGCTCACGCCGCAGCTCGTCCTCCTCTC
CCGGTGTGAAGAAGAGCCGCAGCTCCACGCCGCAGGAGCTGCACCGCCTGGAGCAGCAGGACGA
CCTGTACCTGGACATCACGGATCGCCTTTGTTTTGCCATTCTCTACAGCAGACCAAAGAGTGCA
TCAAACGAGCATTATTTCAGCATAGATAACGAGCTAGAGTATGAGAACTTCTATGCGGATTTTG
GACCACTCAATCTGGCCATGGTTTACAGATATTGTTGCAAGATAAATAAGAAGCTCAAGTCCAT
TACAATGCTGAGGAAGAAAATTATCCATTTTACCGGCACTGATCAGAGAAAGCAAGCGAATGCC
GCCTTCCTTATCGGGTGTTATATGGTTATATATTTGGGGAGGGCACCAGAAGACGCGTATAGAA
CATTAATCTTCGGGGATACAGCCTATATTCCTTTCAGAGATGCTGCCTATGGAAGCTGCAGTTT
CTACATTACACTTCTCGACTGTTTTCATGCAGTAAAAAAGGCAATCCAGTATGGCTTCCTTAAT
TTCAACTCATTTAACCTCGATGAATATGAACACTATGAAAAAGCAGAAAATGGAGATTTCAACT
GGATAATACCAGAGCGGTTTCTTGCCTTCTGTGGGCCACACTCAAGATCCAGGCTGGAAAGTGG
TTACCACCAACATTCTCCTGAGACTTATATTCCATATTTTAAGAATCACAATGTAACTACCATT
ATCCGTCTGAATAAAAGGATGTATGATGCTAAGCGCTTTACGGATGCTGGATTCGATCACCATG
ATCTTTTCTTTCCGGATGGCAGCACCCCTGCTGAGGCAATTGTCCAAGAATTTCTGGATATTTG
TGAAAATGTCGAGGGTGCCATTGCGGTGCATTGCAAAGCTGGCCTTGGTCGAACAGGCACACTG
ATAGGCTGCTACCTCATGAAACATTACAGGATGACAGCAGCCGAGAGCATTGCCTGGCTCAGGA
TCTGTAGGCCCGGCTCAGTGATTGGGCCCCAGCAACAGTTTCTGGTCATGAAGCAATCGAGCCT
CTGGCTGGAAGGCGACTATTTCCGTCAAAAGTTGAGAGGGCAGGAGAACGGAGCCCTCAGAGAA
GCCTTCTCCAAACACCTTTCAGATGTTGATGACATTTCGATAAATGGGCTTGAGAATCAAGACA
GTCAAGAGCCTGAGCCGTATAGTGATGATGATGAAGTCAGTGGAGTGACACAAGGAGACAGACT
TCGGGCCCTGAAAAGCCGGAGACAGCCGAAAACCAACGCTATCCCCCTCACAGTAATTCTTCAG
TCCAGTGTTCAGAGCTCTAAAACCCCTGAACCTAACCTTTCTGGCAGTGCAGGCATTACTAAAC
GAACCACCAGATCTGCTTCGGGAAAAAGCAGTCTTAAAAGCCTGGCTCCTTGGAGGGAGAGGAG
GAGGAGGAGTGCTTTGCAGCACATGCCCATGCTGGCCTTATGTCCAGCCATTTCAAGGACTAAG
ACAGTCTTACGTTAAAGTAAAAAACCGGTGAACAGCACTCCAGGGAAGACTAGGAACAGAAAAC
CCCAAAGGATTTAGCCAATCGATCTGAGAACAAAGCAGACTGTGCAATGGCCTTAGCTTCTTTC
CACATAAGAAGTTCATTCAAGGAGGAAAATGTCACTGGCCTGTCATCCACTCACTGACTCTGGG
GTGTGGTTGAACCATTTGAAGGCCTGACTCTCCCTTTCATAATCTCAAGTCGGACAAAAGCTGC
TGTTGTGAATTTAGTCTCAGGTGTCGATACCCTGTCCTCTGCCACCAGAGAGCTGTCTGGTGAG
TGTGGTACATGTGTGTCCCTGTGATGGCAATCATGTTTGCTGCTGGCCTCCAGAAGAGTGGGGG
ATCTGGTGGAGATCTCTTGGGTATTTATTTCTGTTCGGCCTGTGGCCCCGACTTACAGTTTATA
AAGATGTAAGAGATGAACCCCCCAGTGGTACCCTCCGTCTTAAGGTGTGATTTGGTACGGTCAG
CTTCACTTTACTCTCGTTAACGCTGTTGTGATGTTCGTTCACTGCGTGAAGTACCCAAGCTGCT
TGTCTTTCACCAAAGAGTGCTTTATTAACAATCTGTGAATACTGCATTTAAACACTGTTGTATG
TTGTCGTGGTTACCAAAAACCTGCTAGAAAATGTTGATGAGAGCATTGGAACCCTTTCTCAGTC
AAATGGTTCCTACAAATCCTTCCTTGTGTCATTTAGAAGATTTCAGAGCTGAGATGTTGTTGGG
TTGCTCAGTCACATGTTTTTTGTGGTTTTTTTTTTCATTTTTTTTTTCTTTTTTTTTTTTTTTT
TTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAG
CCAAATCCCCAACCCCGCTCAGTCACATGTTATAATTGTGTTTACTCCATTACATTAAAACCAA
ACATCAACCCTAGCATTTTTTCTGGAAAAGCATCGTAAATAATGTTGACTTTAAAAACAAAATT
GTGAGCCTTGAGGTAGTGGTGCTTGCCTTTAATCCCAGCATTGGGAGGCAGAGGCAGGTGCATG
TCTGAGTTCAAGGCCAGCCAATGATACATAAGGAAGTCTCAGAGACAACAAAACAAAAACCAAC
CCCCACATCCCAAAACTGTTAAGTCCTTGTAGAGTCTTTCTCTGTAATGCTGCGGAATTTCTTT
CCTTGTGATTCACAGTTTGATTTTAGTGACAATCACTTGCTTCTGGAGTTAGGCTGTTTATGTA
AGAGAACTCACTGTTGCCTTTGGTTAGGGAATATGACTAGAAACTGTAGCGTGCCTTTTCTCTT
CATCCTGCTGGAACCCAGCAGCACCCGTGCCATGAAGCAATTGCAAAACCAGAATTTATCTGTT
GCCAA

hide sequence

RefSeq Acc Id:

NM_001415672 ⟹ NP_001402601

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,412 - 938,966 (+)	NCBI
mRatBN7.2	17	844,686 - 933,231 (+)	NCBI

RefSeq Acc Id:

NM_001415673 ⟹ NP_001402602

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,412 - 935,596 (+)	NCBI
mRatBN7.2	17	844,686 - 929,861 (+)	NCBI

RefSeq Acc Id:

NM_001415674 ⟹ NP_001402603

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	876,822 - 935,596 (+)	NCBI
mRatBN7.2	17	871,098 - 929,861 (+)	NCBI

RefSeq Acc Id:

XM_039095828 ⟹ XP_038951756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 935,596 (+)	NCBI
mRatBN7.2	17	844,881 - 929,861 (+)	NCBI

RefSeq Acc Id:

XM_039095830 ⟹ XP_038951758

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 938,972 (+)	NCBI
mRatBN7.2	17	844,881 - 933,237 (+)	NCBI

RefSeq Acc Id:

XM_039095833 ⟹ XP_038951761

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 927,331 (+)	NCBI
mRatBN7.2	17	844,881 - 921,609 (+)	NCBI

RefSeq Acc Id:

XM_039095836 ⟹ XP_038951764

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 935,596 (+)	NCBI
mRatBN7.2	17	844,881 - 929,861 (+)	NCBI

RefSeq Acc Id:

XM_039095837 ⟹ XP_038951765

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 938,740 (+)	NCBI
mRatBN7.2	17	844,881 - 932,865 (+)	NCBI

RefSeq Acc Id:

XM_039095838 ⟹ XP_038951766

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 935,596 (+)	NCBI
mRatBN7.2	17	844,881 - 929,861 (+)	NCBI

RefSeq Acc Id:

XM_039095839 ⟹ XP_038951767

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,664 - 935,596 (+)	NCBI
mRatBN7.2	17	844,952 - 929,861 (+)	NCBI

RefSeq Acc Id:

XM_039095840 ⟹ XP_038951768

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 935,596 (+)	NCBI
mRatBN7.2	17	844,881 - 929,861 (+)	NCBI

RefSeq Acc Id:

XM_039095841 ⟹ XP_038951769

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 938,972 (+)	NCBI
mRatBN7.2	17	844,881 - 934,787 (+)	NCBI

RefSeq Acc Id:

XM_039095842 ⟹ XP_038951770

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,664 - 935,596 (+)	NCBI
mRatBN7.2	17	844,953 - 929,861 (+)	NCBI

RefSeq Acc Id:

XM_039095843 ⟹ XP_038951771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	876,960 - 931,773 (+)	NCBI
mRatBN7.2	17	871,243 - 929,861 (+)	NCBI

RefSeq Acc Id:

XM_039095845 ⟹ XP_038951773

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 913,379 (+)	NCBI
mRatBN7.2	17	844,881 - 907,730 (+)	NCBI

RefSeq Acc Id:

XM_063276542 ⟹ XP_063132612

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 931,773 (+)	NCBI

RefSeq Acc Id:

XM_063276543 ⟹ XP_063132613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,664 - 931,773 (+)	NCBI

RefSeq Acc Id:

XM_063276545 ⟹ XP_063132615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,664 - 931,773 (+)	NCBI

RefSeq Acc Id:

XM_063276546 ⟹ XP_063132616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 931,773 (+)	NCBI

RefSeq Acc Id:

XM_063276547 ⟹ XP_063132617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,664 - 938,972 (+)	NCBI

RefSeq Acc Id:

XM_063276548 ⟹ XP_063132618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 938,740 (+)	NCBI

RefSeq Acc Id:

XR_005495291

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 935,596 (+)	NCBI
mRatBN7.2	17	844,881 - 929,861 (+)	NCBI

RefSeq Acc Id:

XR_005495292

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	850,272 - 918,621 (+)	NCBI
mRatBN7.2	17	844,881 - 912,901 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101874	(Get FASTA)	NCBI Sequence Viewer
	NP_001402601	(Get FASTA)	NCBI Sequence Viewer
	NP_001402602	(Get FASTA)	NCBI Sequence Viewer
	NP_001402603	(Get FASTA)	NCBI Sequence Viewer
	XP_038951756	(Get FASTA)	NCBI Sequence Viewer
	XP_038951758	(Get FASTA)	NCBI Sequence Viewer
	XP_038951761	(Get FASTA)	NCBI Sequence Viewer
	XP_038951764	(Get FASTA)	NCBI Sequence Viewer
	XP_038951765	(Get FASTA)	NCBI Sequence Viewer
	XP_038951766	(Get FASTA)	NCBI Sequence Viewer
	XP_038951767	(Get FASTA)	NCBI Sequence Viewer
	XP_038951768	(Get FASTA)	NCBI Sequence Viewer
	XP_038951769	(Get FASTA)	NCBI Sequence Viewer
	XP_038951770	(Get FASTA)	NCBI Sequence Viewer
	XP_038951771	(Get FASTA)	NCBI Sequence Viewer
	XP_038951773	(Get FASTA)	NCBI Sequence Viewer
	XP_063132612	(Get FASTA)	NCBI Sequence Viewer
	XP_063132613	(Get FASTA)	NCBI Sequence Viewer
	XP_063132615	(Get FASTA)	NCBI Sequence Viewer
	XP_063132616	(Get FASTA)	NCBI Sequence Viewer
	XP_063132617	(Get FASTA)	NCBI Sequence Viewer
	XP_063132618	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL84431	(Get FASTA)	NCBI Sequence Viewer
	EDL84432	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038515
	ENSRNOP00000038515.7
	ENSRNOP00000074320
	ENSRNOP00000074320.3
	ENSRNOP00000077998
	ENSRNOP00000077998.2
	ENSRNOP00000079866
	ENSRNOP00000079866.2
	ENSRNOP00000085712
	ENSRNOP00000085712.2
	ENSRNOP00000094659.2
	ENSRNOP00000097799
	ENSRNOP00000097799.2
	ENSRNOP00000100855.1
	ENSRNOP00000101802
	ENSRNOP00000101802.1
	ENSRNOP00000111650
	ENSRNOP00000111650.1

RefSeq Acc Id:	NP_001101874 ⟸ NM_001108404
- Peptide Label:	isoform 1
- UniProtKB:	F1M567 (UniProtKB/TrEMBL), A6KQD8 (UniProtKB/TrEMBL), A0A8I5ZZU6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKRKSERRSAWATAPPCSRRSSSSSPGVKKSRSSTPQELHRLEQQDDLYLDITDRLCFAILYSR PKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRK QANAAFLIGCYMVIYLGRAPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAIQY GFLNFNSFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHN VTTIIRLNKRMYDAKRFTDAGFDHHDLFFPDGSTPAEAIVQEFLDICENVEGAIAVHCKAGLGR TGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQKLRGQENG ALREAFSKHLSDVDDISINGLENQDSQEPEPYSDDDEVSGVTQGDRLRALKSRRQPKTNAIPLT VILQSSVQSSKTPEPNLSGSAGITKRTTRSASGKSSLKSLAPWRERRRRSALQHMPMLALCPAI SRTKTVLR hide sequence

Ensembl Acc Id:

ENSRNOP00000074320 ⟸ ENSRNOT00000079742

Ensembl Acc Id:

ENSRNOP00000038515 ⟸ ENSRNOT00000033017

RefSeq Acc Id:	XP_038951769 ⟸ XM_039095841
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951758 ⟸ XM_039095830
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K7S1 (UniProtKB/TrEMBL), A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951765 ⟸ XM_039095837
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951766 ⟸ XM_039095838
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951756 ⟸ XM_039095828
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AK31 (UniProtKB/TrEMBL), A6KQD7 (UniProtKB/TrEMBL), A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951764 ⟸ XM_039095836
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951768 ⟸ XM_039095840
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951761 ⟸ XM_039095833
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5YC46 (UniProtKB/TrEMBL), A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951773 ⟸ XM_039095845
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038951767 ⟸ XM_039095839
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951770 ⟸ XM_039095842
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I5ZNF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951771 ⟸ XM_039095843
- Peptide Label:	isoform X15

Ensembl Acc Id:

ENSRNOP00000085712 ⟸ ENSRNOT00000119773

Ensembl Acc Id:

ENSRNOP00000077998 ⟸ ENSRNOT00000114178

Ensembl Acc Id:

ENSRNOP00000097799 ⟸ ENSRNOT00000119245

Ensembl Acc Id:

ENSRNOP00000079866 ⟸ ENSRNOT00000095758

Ensembl Acc Id:

ENSRNOP00000094659 ⟸ ENSRNOT00000105267

RefSeq Acc Id:	NP_001402601 ⟸ NM_001415672
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I6GMP1 (UniProtKB/TrEMBL), A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402602 ⟸ NM_001415673
- Peptide Label:	isoform 3
- UniProtKB:	A0A8I5YC46 (UniProtKB/TrEMBL), A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402603 ⟸ NM_001415674
- Peptide Label:	isoform 4
- UniProtKB:	A0A8I5ZNF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132618 ⟸ XM_063276548
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132612 ⟸ XM_063276542
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132616 ⟸ XM_063276546
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132617 ⟸ XM_063276547
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063132613 ⟸ XM_063276543
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132615 ⟸ XM_063276545
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZZU6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000101802 ⟸ ENSRNOT00000124350

Ensembl Acc Id:

ENSRNOP00000111650 ⟸ ENSRNOT00000135078

Ensembl Acc Id:

ENSRNOP00000100855 ⟸ ENSRNOT00000131409

Protein Domains

Tyrosine specific protein phosphatases Tyrosine-protein phosphatase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M567-F1-model_v2	AlphaFold	F1M567	1-520	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700269

Promoter ID:

EPDNEW_R10786

Type:

multiple initiation site

Name:

Cdc14b_1

Description:

cell division cycle 14B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	1,797,777 - 1,797,837	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311163	AgrOrtholog
BioCyc Gene	G2FUF-10541	BioCyc
Ensembl Genes	ENSRNOG00000018999	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000033017	ENTREZGENE
	ENSRNOT00000033017.8	UniProtKB/TrEMBL
	ENSRNOT00000079742	ENTREZGENE
	ENSRNOT00000079742.3	UniProtKB/TrEMBL
	ENSRNOT00000095758	ENTREZGENE
	ENSRNOT00000095758.2	UniProtKB/TrEMBL
	ENSRNOT00000105267.2	UniProtKB/TrEMBL
	ENSRNOT00000114178	ENTREZGENE
	ENSRNOT00000114178.2	UniProtKB/TrEMBL
	ENSRNOT00000119245	ENTREZGENE
	ENSRNOT00000119245.2	UniProtKB/TrEMBL
	ENSRNOT00000119773	ENTREZGENE
	ENSRNOT00000119773.2	UniProtKB/TrEMBL
	ENSRNOT00000124350	ENTREZGENE
	ENSRNOT00000124350.1	UniProtKB/TrEMBL
	ENSRNOT00000131409.1	UniProtKB/TrEMBL
	ENSRNOT00000135078	ENTREZGENE
	ENSRNOT00000135078.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.190.10	UniProtKB/TrEMBL
InterPro	CDC14_C	UniProtKB/TrEMBL
	DSPn	UniProtKB/TrEMBL
	Dual-sp_phosphatase_subgr_cat	UniProtKB/TrEMBL
	Prot-tyrosine_phosphatase-like	UniProtKB/TrEMBL
	PTP	UniProtKB/TrEMBL
	Tyr/Dual-specificity_Pase	UniProtKB/TrEMBL
	Tyr_Pase_AS	UniProtKB/TrEMBL
	Tyr_Pase_cat	UniProtKB/TrEMBL
KEGG Report	rno:361195	UniProtKB/TrEMBL
NCBI Gene	361195	ENTREZGENE
PANTHER	TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE	UniProtKB/TrEMBL
Pfam	DSPn	UniProtKB/TrEMBL
	Tc-R-P	UniProtKB/TrEMBL
PhenoGen	Cdc14b	PhenoGen
PROSITE	TYR_PHOSPHATASE_1	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_2	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_DUAL	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018999	RatGTEx
SMART	DSPc	UniProtKB/TrEMBL
	PTPc_motif	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52799	UniProtKB/TrEMBL
UniProt	A0A0G2K7S1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5YC46	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZNF2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZZU6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AK31	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GMP1	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LEH4_RAT	UniProtKB/TrEMBL
	A0ABK0LH56_RAT	UniProtKB/TrEMBL
	A0ABK0LL40_RAT	UniProtKB/TrEMBL
	A6KQD7	ENTREZGENE, UniProtKB/TrEMBL
	A6KQD8	ENTREZGENE, UniProtKB/TrEMBL
	F1M567	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-01-23	Cdc14b	cell division cycle 14B	Cdc14b	CDC14 cell division cycle 14 homolog B (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Cdc14b	CDC14 cell division cycle 14 homolog B (S. cerevisiae)	Cdc14b_predicted	CDC14 cell division cycle 14 homolog B (S. cerevisiae) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cdc14b_predicted	CDC14 cell division cycle 14 homolog B (S. cerevisiae) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Send us a Message

RGD Manual Annotations

Imported Annotations - KEGG (archival)