Garin5a (golgi associated RAB2 interactor 5A) - Rat Genome Database

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Gene: Garin5a (golgi associated RAB2 interactor 5A) Rattus norvegicus
Analyze
Symbol: Garin5a
Name: golgi associated RAB2 interactor 5A
RGD ID: 1311142
Description: Predicted to be involved in defense response to virus; innate immune response; and positive regulation of type I interferon production. Predicted to act upstream of or within several processes, including flagellated sperm motility; penetration of zona pellucida; and spermatid development. Predicted to be located in Golgi apparatus. Predicted to be active in sperm head. Orthologous to human GARIN5A (golgi associated RAB2 interactor 5A); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam71e1; family with sequence similarity 71, member E1; Golgi-associated RAB2 interactor protein 5A; LOC361564; RGD1311142; similar to hypothetical protein FLJ32796
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,125,477 - 104,130,543 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1104,125,160 - 104,135,840 (+)EnsemblGRCr8
mRatBN7.2194,988,959 - 94,995,971 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,988,613 - 94,993,539 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1100,374,382 - 100,378,935 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,847,030 - 108,851,583 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,137,455 - 102,142,008 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,501,556 - 100,507,334 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,501,676 - 100,506,022 (+)Ensemblrn6Rnor6.0
Rnor_5.01101,566,949 - 101,572,014 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4194,974,280 - 94,978,738 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera189,251,524 - 89,257,302 (+)NCBICelera
RGSC_v3.1195,052,353 - 95,056,848 (+)NCBI
Cytogenetic Map1q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Garin5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,125,477 - 104,130,543 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1104,125,160 - 104,135,840 (+)EnsemblGRCr8
mRatBN7.2194,988,959 - 94,995,971 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,988,613 - 94,993,539 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1100,374,382 - 100,378,935 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,847,030 - 108,851,583 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,137,455 - 102,142,008 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,501,556 - 100,507,334 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,501,676 - 100,506,022 (+)Ensemblrn6Rnor6.0
Rnor_5.01101,566,949 - 101,572,014 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4194,974,280 - 94,978,738 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera189,251,524 - 89,257,302 (+)NCBICelera
RGSC_v3.1195,052,353 - 95,056,848 (+)NCBI
Cytogenetic Map1q22NCBI
GARIN5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,466,788 - 50,476,848 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,466,785 - 50,476,866 (-)Ensemblhg38GRCh38
GRCh371950,970,045 - 50,980,105 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,661,857 - 55,671,815 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1948,020,207 - 48,030,144 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1947,307,845 - 47,317,851 (-)NCBIHuRef
CHM1_11950,971,789 - 50,981,746 (-)NCBICHM1_1
T2T-CHM13v2.01953,554,302 - 53,564,334 (-)NCBIT2T-CHM13v2.0
Garin5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,145,923 - 44,153,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,146,005 - 44,150,910 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38744,496,499 - 44,504,266 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,496,581 - 44,501,486 (+)Ensemblmm10GRCm38
MGSCv37751,751,958 - 51,756,504 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36744,364,630 - 44,369,528 (+)NCBIMGSCv36mm8
Celera739,946,509 - 39,951,055 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.83NCBI
Garin5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955559676,693 - 680,482 (+)Ensembl
ChiLan1.0NW_004955559676,597 - 683,690 (+)NCBIChiLan1.0ChiLan1.0
GARIN5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,533,511 - 56,542,881 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,454,266 - 58,463,744 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01947,430,860 - 47,440,894 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11956,331,851 - 56,342,033 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1956,331,851 - 56,342,033 (-)EnsemblpanPan2panpan1.1
GARIN5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,261,215 - 106,266,317 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,261,183 - 106,266,315 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1105,834,296 - 105,839,419 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01106,772,262 - 106,777,385 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,772,463 - 106,777,383 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,444,457 - 106,449,580 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,085,930 - 106,091,053 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,926,589 - 106,931,714 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Garin5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,407,446 - 22,412,802 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936889283,545 - 288,576 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936889283,435 - 288,795 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GARIN5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,310,729 - 55,316,370 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1655,310,616 - 55,316,269 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,159,521 - 51,165,348 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GARIN5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,531,388 - 43,537,532 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607323,519,569 - 23,525,970 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Garin5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248324,084,962 - 4,088,932 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Garin5a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12155,031,650 - 155,037,403 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Garin5a
55 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:46
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000043724
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 90 59 6 353 190 11 139 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001077811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000043724   ⟹   ENSRNOP00000045841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,125,160 - 104,130,052 (+)Ensembl
mRatBN7.2 Ensembl194,988,613 - 94,993,539 (+)Ensembl
Rnor_6.0 Ensembl1100,501,676 - 100,506,022 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112183   ⟹   ENSRNOP00000097592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,125,501 - 104,135,840 (+)Ensembl
mRatBN7.2 Ensembl194,988,876 - 94,993,539 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118748   ⟹   ENSRNOP00000085837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,125,401 - 104,130,431 (+)Ensembl
mRatBN7.2 Ensembl194,988,959 - 94,993,539 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000124332   ⟹   ENSRNOP00000108146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,125,501 - 104,131,451 (+)Ensembl
RefSeq Acc Id: NM_001400842   ⟹   NP_001387771
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,501 - 104,130,054 (+)NCBI
mRatBN7.2194,988,980 - 94,993,533 (+)NCBI
RefSeq Acc Id: XM_006229179   ⟹   XP_006229241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,499 - 104,130,054 (+)NCBI
mRatBN7.2194,988,959 - 94,993,535 (+)NCBI
Rnor_6.01100,501,556 - 100,506,133 (+)NCBI
Rnor_5.01101,566,949 - 101,572,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006229180   ⟹   XP_006229242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,709 - 104,130,543 (+)NCBI
mRatBN7.2194,989,188 - 94,995,971 (+)NCBI
Rnor_6.01100,501,556 - 100,507,334 (+)NCBI
Rnor_5.01101,566,949 - 101,572,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006229182   ⟹   XP_006229244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,709 - 104,130,543 (+)NCBI
mRatBN7.2194,989,188 - 94,995,971 (+)NCBI
Rnor_6.01100,501,556 - 100,506,506 (+)NCBI
Rnor_5.01101,566,949 - 101,572,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039100941   ⟹   XP_038956869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,709 - 104,130,054 (+)NCBI
mRatBN7.2194,989,188 - 94,993,535 (+)NCBI
RefSeq Acc Id: XM_039100942   ⟹   XP_038956870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,709 - 104,130,054 (+)NCBI
mRatBN7.2194,989,188 - 94,993,535 (+)NCBI
RefSeq Acc Id: XM_039100943   ⟹   XP_038956871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,709 - 104,129,880 (+)NCBI
mRatBN7.2194,989,188 - 94,993,359 (+)NCBI
RefSeq Acc Id: XM_039100945   ⟹   XP_038956873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,501 - 104,130,054 (+)NCBI
mRatBN7.2194,988,980 - 94,993,535 (+)NCBI
RefSeq Acc Id: XM_039100946   ⟹   XP_038956874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,501 - 104,130,054 (+)NCBI
mRatBN7.2194,988,980 - 94,993,535 (+)NCBI
RefSeq Acc Id: XM_039100947   ⟹   XP_038956875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,506 - 104,130,054 (+)NCBI
mRatBN7.2194,988,987 - 94,993,535 (+)NCBI
RefSeq Acc Id: XM_039100948   ⟹   XP_038956876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,501 - 104,130,054 (+)NCBI
mRatBN7.2194,988,980 - 94,993,535 (+)NCBI
RefSeq Acc Id: XM_063266601   ⟹   XP_063122671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,477 - 104,130,543 (+)NCBI
RefSeq Acc Id: XM_063266614   ⟹   XP_063122684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,477 - 104,129,880 (+)NCBI
RefSeq Acc Id: XM_063266615   ⟹   XP_063122685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,477 - 104,130,543 (+)NCBI
RefSeq Acc Id: XM_063266626   ⟹   XP_063122696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,125,501 - 104,130,054 (+)NCBI
RefSeq Acc Id: XP_006229242   ⟸   XM_006229180
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006229241   ⟸   XM_006229179
- Peptide Label: isoform X3
- UniProtKB: D4A176 (UniProtKB/TrEMBL),   A0A8I6A4X8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229244   ⟸   XM_006229182
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A4X8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000045841   ⟸   ENSRNOT00000043724
RefSeq Acc Id: XP_038956874   ⟸   XM_039100946
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038956876   ⟸   XM_039100948
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038956873   ⟸   XM_039100945
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038956875   ⟸   XM_039100947
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038956869   ⟸   XM_039100941
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038956870   ⟸   XM_039100942
- Peptide Label: isoform X5
- UniProtKB: A6JAQ1 (UniProtKB/TrEMBL),   A0A8I6A4X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956871   ⟸   XM_039100943
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A4X8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097592   ⟸   ENSRNOT00000112183
Ensembl Acc Id: ENSRNOP00000085837   ⟸   ENSRNOT00000118748
RefSeq Acc Id: NP_001387771   ⟸   NM_001400842
- UniProtKB: A0A8I6A4X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122671   ⟸   XM_063266601
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A4X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122685   ⟸   XM_063266615
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A4X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122684   ⟸   XM_063266614
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A4X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122696   ⟸   XM_063266626
- Peptide Label: isoform X12
Ensembl Acc Id: ENSRNOP00000108146   ⟸   ENSRNOT00000124332
Protein Domains
Golgi associated RAB2 interactor protein-like Rab2B-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A176-F1-model_v2 AlphaFold D4A176 1-206 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690005
Promoter ID:EPDNEW_R523
Type:initiation region
Name:Fam71e1_1
Description:family with sequence similarity 71, member E1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01100,501,619 - 100,501,679EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311142 AgrOrtholog
BioCyc Gene G2FUF-59766 BioCyc
Ensembl Genes ENSRNOG00000031739 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043724 ENTREZGENE
  ENSRNOT00000043724.6 UniProtKB/TrEMBL
  ENSRNOT00000112183.2 UniProtKB/TrEMBL
  ENSRNOT00000118748.2 UniProtKB/TrEMBL
  ENSRNOT00000124332 ENTREZGENE
  ENSRNOT00000124332.1 UniProtKB/TrEMBL
InterPro DUF3699 UniProtKB/TrEMBL
NCBI Gene 361564 ENTREZGENE
PANTHER PROTEIN FAM71E1 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DUF3699 UniProtKB/TrEMBL
PhenoGen Garin5a PhenoGen
RatGTEx ENSRNOG00000031739 RatGTEx
UniProt A0A8I6A4X8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B5Z4_RAT UniProtKB/TrEMBL
  A0ABK0LV76_RAT UniProtKB/TrEMBL
  A6JAQ1 ENTREZGENE, UniProtKB/TrEMBL
  D4A176 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-12-02 Garin5a  golgi associated RAB2 interactor 5A  Fam71e1  family with sequence similarity 71, member E1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Fam71e1  family with sequence similarity 71, member E1  RGD1311142  similar to hypothetical protein FLJ32796  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1311142  similar to hypothetical protein FLJ32796   RGD1311142_predicted  similar to hypothetical protein FLJ32796 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311142_predicted  similar to hypothetical protein FLJ32796 (predicted)  LOC361564_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361564_predicted  similar to hypothetical protein FLJ32796 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL