Garin5a (golgi associated RAB2 interactor 5A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Garin5a (golgi associated RAB2 interactor 5A) Chinchilla lanigera
Analyze
Symbol: Garin5a
Name: golgi associated RAB2 interactor 5A
RGD ID: 8739637
Description: INVOLVED IN defense response to virus (ortholog); innate immune response (ortholog); positive regulation of type I interferon production (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorder with Dysmorphic Facies and Variable Seizures (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam71e1; family with sequence similarity 71 member E1; family with sequence similarity 71, member E1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955559676,597 - 683,690 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Garin5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955559676,597 - 683,690 (+)NCBIChiLan1.0ChiLan1.0
GARIN5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,466,788 - 50,476,848 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,466,785 - 50,476,848 (-)EnsemblGRCh38hg38GRCh38
GRCh371950,970,045 - 50,980,105 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,661,857 - 55,671,815 (-)NCBINCBI36Build 36hg18NCBI36
Celera1948,020,207 - 48,030,144 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1947,307,845 - 47,317,851 (-)NCBIHuRef
CHM1_11950,971,789 - 50,981,746 (-)NCBICHM1_1
T2T-CHM13v2.01953,554,302 - 53,564,334 (-)NCBIT2T-CHM13v2.0
Garin5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,145,923 - 44,153,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,146,005 - 44,150,910 (+)EnsemblGRCm39 Ensembl
GRCm38744,496,499 - 44,504,266 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,496,581 - 44,501,486 (+)EnsemblGRCm38mm10GRCm38
MGSCv37751,751,958 - 51,756,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,364,630 - 44,369,528 (+)NCBIMGSCv36mm8
Celera739,946,509 - 39,951,055 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.83NCBI
Garin5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,125,477 - 104,130,543 (+)NCBIGRCr8
mRatBN7.2194,988,959 - 94,995,971 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,988,613 - 94,993,539 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,374,382 - 100,378,935 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,847,030 - 108,851,583 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,137,455 - 102,142,008 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,501,556 - 100,507,334 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,501,676 - 100,506,022 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,566,949 - 101,572,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4194,974,280 - 94,978,738 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,052,353 - 95,056,848 (+)NCBI
Celera189,251,524 - 89,257,302 (+)NCBICelera
Cytogenetic Map1q22NCBI
GARIN5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,533,511 - 56,542,881 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,454,266 - 58,463,744 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01947,430,860 - 47,440,894 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11956,331,851 - 56,342,033 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1956,331,851 - 56,342,033 (-)Ensemblpanpan1.1panPan2
GARIN5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,261,215 - 106,266,317 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,261,183 - 106,266,315 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,834,296 - 105,839,419 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,772,262 - 106,777,385 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,772,463 - 106,777,383 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,444,457 - 106,449,580 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,085,930 - 106,091,053 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,926,589 - 106,931,714 (+)NCBIUU_Cfam_GSD_1.0
Garin5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,407,446 - 22,412,802 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936889283,545 - 288,576 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936889283,435 - 288,795 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GARIN5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,310,729 - 55,316,370 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,310,616 - 55,316,269 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,159,521 - 51,165,348 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GARIN5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,531,388 - 43,537,532 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607323,519,569 - 23,525,970 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Garin5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248324,084,962 - 4,088,932 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013509021   ⟹   XP_013364475
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955559676,597 - 680,868 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509022   ⟹   XP_013364476
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955559676,597 - 683,690 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013364475 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364476 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000008450
  ENSCLAP00000008450.1
Reference Protein Sequences
RefSeq Acc Id: XP_013364476   ⟸   XM_013509022
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013364475   ⟸   XM_013509021
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V185 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Golgi associated RAB2 interactor protein-like Rab2B-


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005914 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008577 ENTREZGENE
  ENSCLAT00000008577.1 UniProtKB/TrEMBL
InterPro DUF3699 UniProtKB/TrEMBL
NCBI Gene Fam71e1 ENTREZGENE
PANTHER PROTEIN FAM71E1 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DUF3699 UniProtKB/TrEMBL
UniProt A0A8C2V185 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-11-30 Garin5a  golgi associated RAB2 interactor 5A  Fam71e1  family with sequence similarity 71 member E1  Symbol and/or name change 5135510 APPROVED
2016-08-16 Fam71e1  family with sequence similarity 71 member E1    family with sequence similarity 71, member E1  Symbol and/or name change 5135510 APPROVED