Garin5a (golgi associated RAB2 interactor 5A) - Rat Genome Database

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Gene: Garin5a (golgi associated RAB2 interactor 5A) Mus musculus
Analyze
Symbol: Garin5a
Name: golgi associated RAB2 interactor 5A
RGD ID: 1322445
MGI Page MGI
Description: Involved in defense response to virus; innate immune response; and positive regulation of type I interferon production. Located in Golgi apparatus. Orthologous to human GARIN5A (golgi associated RAB2 interactor 5A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610007G24Rik; 1700021N13Rik; 1700021P22Rik; Fam71e1; family with sequence similarity 71, member E1; GARI-L5; GARIL5; Golgi associated RAB2 interactor protein 5A; Golgi-associated RAB2 interactor protein 5A; Golgi-associated Rab2B interactor-like 5; hypothetical protein LOC75538; MGC161173
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,145,923 - 44,153,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,146,005 - 44,150,910 (+)EnsemblGRCm39 Ensembl
GRCm38744,496,499 - 44,504,266 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,496,581 - 44,501,486 (+)EnsemblGRCm38mm10GRCm38
MGSCv37751,751,958 - 51,756,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,364,630 - 44,369,528 (+)NCBIMGSCv36mm8
Celera739,946,509 - 39,951,055 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:17967808   PMID:18256213   PMID:18799693   PMID:21267068   PMID:28930687  


Genomics

Comparative Map Data
Garin5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,145,923 - 44,153,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,146,005 - 44,150,910 (+)EnsemblGRCm39 Ensembl
GRCm38744,496,499 - 44,504,266 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,496,581 - 44,501,486 (+)EnsemblGRCm38mm10GRCm38
MGSCv37751,751,958 - 51,756,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,364,630 - 44,369,528 (+)NCBIMGSCv36mm8
Celera739,946,509 - 39,951,055 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.83NCBI
GARIN5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,466,788 - 50,476,848 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,466,785 - 50,476,848 (-)EnsemblGRCh38hg38GRCh38
GRCh371950,970,045 - 50,980,105 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,661,857 - 55,671,815 (-)NCBINCBI36Build 36hg18NCBI36
Celera1948,020,207 - 48,030,144 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1947,307,845 - 47,317,851 (-)NCBIHuRef
CHM1_11950,971,789 - 50,981,746 (-)NCBICHM1_1
T2T-CHM13v2.01953,554,302 - 53,564,334 (-)NCBIT2T-CHM13v2.0
Garin5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,125,477 - 104,130,543 (+)NCBIGRCr8
mRatBN7.2194,988,959 - 94,995,971 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,988,613 - 94,993,539 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,374,382 - 100,378,935 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,847,030 - 108,851,583 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,137,455 - 102,142,008 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,501,556 - 100,507,334 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,501,676 - 100,506,022 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,566,949 - 101,572,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4194,974,280 - 94,978,738 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,052,353 - 95,056,848 (+)NCBI
Celera189,251,524 - 89,257,302 (+)NCBICelera
Cytogenetic Map1q22NCBI
Garin5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955559676,597 - 683,690 (+)NCBIChiLan1.0ChiLan1.0
GARIN5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,533,511 - 56,542,881 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,454,266 - 58,463,744 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01947,430,860 - 47,440,894 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11956,331,851 - 56,342,033 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1956,331,851 - 56,342,033 (-)Ensemblpanpan1.1panPan2
GARIN5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,261,215 - 106,266,317 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,261,183 - 106,266,315 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,834,296 - 105,839,419 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,772,262 - 106,777,385 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,772,463 - 106,777,383 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,444,457 - 106,449,580 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,085,930 - 106,091,053 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,926,589 - 106,931,714 (+)NCBIUU_Cfam_GSD_1.0
Garin5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,407,446 - 22,412,802 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936889283,545 - 288,576 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936889283,435 - 288,795 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GARIN5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,310,729 - 55,316,370 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,310,616 - 55,316,269 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,159,521 - 51,165,348 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GARIN5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,531,388 - 43,537,532 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607323,519,569 - 23,525,970 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Garin5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248324,084,962 - 4,088,932 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Garin5a
133 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:92
Interacting mature miRNAs:100
Transcripts:ENSMUST00000107927
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse

Markers in Region
UniSTS:235659  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,500,761 - 44,501,067UniSTSGRCm38
MGSCv37751,756,131 - 51,756,437UniSTSGRCm37
Celera739,950,682 - 39,950,988UniSTS
Cytogenetic Map7B4UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB473729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC149607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC130017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000107927   ⟹   ENSMUSP00000103560
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,146,005 - 44,150,564 (+)Ensembl
GRCm38.p6 Ensembl744,496,581 - 44,501,140 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205359   ⟹   ENSMUSP00000145700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,146,082 - 44,150,557 (+)Ensembl
GRCm38.p6 Ensembl744,496,658 - 44,501,133 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,149,849 - 44,150,556 (+)Ensembl
GRCm38.p6 Ensembl744,500,425 - 44,501,132 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205422   ⟹   ENSMUSP00000146329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,146,023 - 44,146,572 (+)Ensembl
GRCm38.p6 Ensembl744,496,599 - 44,497,148 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,146,012 - 44,149,761 (+)Ensembl
GRCm38.p6 Ensembl744,496,588 - 44,500,337 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,146,096 - 44,147,433 (+)Ensembl
GRCm38.p6 Ensembl744,496,672 - 44,498,009 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206195
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,146,096 - 44,150,910 (+)Ensembl
GRCm38.p6 Ensembl744,496,672 - 44,501,486 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206398   ⟹   ENSMUSP00000145737
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,146,092 - 44,150,557 (+)Ensembl
GRCm38.p6 Ensembl744,496,668 - 44,501,133 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,146,118 - 44,149,790 (+)Ensembl
GRCm38.p6 Ensembl744,496,694 - 44,500,366 (+)Ensembl
RefSeq Acc Id: NM_001357650   ⟹   NP_001344579
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,019 - 44,150,558 (+)NCBI
GRCm38744,496,595 - 44,501,134 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357651   ⟹   NP_001344580
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,019 - 44,150,558 (+)NCBI
GRCm38744,496,595 - 44,501,134 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368290   ⟹   NP_001355219
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,019 - 44,153,690 (+)NCBI
GRCm38744,496,595 - 44,504,266 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368291   ⟹   NP_001355220
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,019 - 44,153,690 (+)NCBI
GRCm38744,496,595 - 44,504,266 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368292   ⟹   NP_001355221
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,019 - 44,150,558 (+)NCBI
GRCm38744,496,595 - 44,501,134 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028169   ⟹   NP_082445
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,019 - 44,150,558 (+)NCBI
GRCm38744,496,595 - 44,501,134 (+)NCBI
MGSCv37751,751,958 - 51,756,504 (+)RGD
Celera739,946,509 - 39,951,055 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006541242   ⟹   XP_006541305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,145,990 - 44,153,690 (+)NCBI
GRCm38744,496,520 - 44,501,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541243   ⟹   XP_006541306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,001 - 44,153,690 (+)NCBI
GRCm38744,496,524 - 44,501,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541244   ⟹   XP_006541307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,061 - 44,153,690 (+)NCBI
GRCm38744,496,523 - 44,504,266 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541245   ⟹   XP_006541308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,061 - 44,153,690 (+)NCBI
GRCm38744,496,529 - 44,504,266 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541248   ⟹   XP_006541311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,047 - 44,153,690 (+)NCBI
GRCm38744,496,517 - 44,501,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250907   ⟹   XP_011249209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,052 - 44,153,690 (+)NCBI
GRCm38744,496,540 - 44,504,266 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243055   ⟹   XP_030098915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,145,923 - 44,150,821 (+)NCBI
GRCm38744,496,499 - 44,501,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243057   ⟹   XP_030098917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,010 - 44,153,690 (+)NCBI
GRCm38744,496,536 - 44,504,266 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243058   ⟹   XP_030098918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,024 - 44,150,816 (+)NCBI
GRCm38744,496,511 - 44,501,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243059   ⟹   XP_030098919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,010 - 44,153,690 (+)NCBI
GRCm38744,496,510 - 44,504,266 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153515   ⟹   XP_036009408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,054 - 44,150,558 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153516   ⟹   XP_036009409
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,001 - 44,150,558 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153517   ⟹   XP_036009410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,001 - 44,153,690 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153518   ⟹   XP_036009411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,051 - 44,153,690 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153519   ⟹   XP_036009412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,146,024 - 44,153,690 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001344579 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344580 (Get FASTA)   NCBI Sequence Viewer  
  NP_001355219 (Get FASTA)   NCBI Sequence Viewer  
  NP_001355220 (Get FASTA)   NCBI Sequence Viewer  
  NP_001355221 (Get FASTA)   NCBI Sequence Viewer  
  NP_082445 (Get FASTA)   NCBI Sequence Viewer  
  XP_006541305 (Get FASTA)   NCBI Sequence Viewer  
  XP_006541306 (Get FASTA)   NCBI Sequence Viewer  
  XP_006541307 (Get FASTA)   NCBI Sequence Viewer  
  XP_006541308 (Get FASTA)   NCBI Sequence Viewer  
  XP_006541311 (Get FASTA)   NCBI Sequence Viewer  
  XP_011249209 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098915 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098917 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098918 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098919 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009408 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009409 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009410 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009411 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009412 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A1L3C1 (Get FASTA)   NCBI Sequence Viewer  
  AAH49752 (Get FASTA)   NCBI Sequence Viewer  
  AAI30018 (Get FASTA)   NCBI Sequence Viewer  
  BAB24467 (Get FASTA)   NCBI Sequence Viewer  
  BAH03394 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000103560
  ENSMUSP00000103560.4
  ENSMUSP00000145700
  ENSMUSP00000145700.2
  ENSMUSP00000145737.2
  ENSMUSP00000146329.2
Reference Protein Sequences
RefSeq Acc Id: NP_082445   ⟸   NM_028169
- Peptide Label: isoform 1
- UniProtKB: E9QKI6 (UniProtKB/Swiss-Prot),   Q0P5X9 (UniProtKB/Swiss-Prot),   A1L3C1 (UniProtKB/Swiss-Prot),   B7XG50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006541306   ⟸   XM_006541243
- Peptide Label: isoform X3
- UniProtKB: A0A0U1RNU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006541311   ⟸   XM_006541248
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006541308   ⟸   XM_006541245
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006541307   ⟸   XM_006541244
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006541305   ⟸   XM_006541242
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011249209   ⟸   XM_011250907
- Peptide Label: isoform X8
- UniProtKB: B7XG50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030098915   ⟸   XM_030243055
- Peptide Label: isoform X10
RefSeq Acc Id: XP_030098919   ⟸   XM_030243059
- Peptide Label: isoform X14
RefSeq Acc Id: XP_030098918   ⟸   XM_030243058
- Peptide Label: isoform X13
RefSeq Acc Id: XP_030098917   ⟸   XM_030243057
- Peptide Label: isoform X12
RefSeq Acc Id: NP_001355219   ⟸   NM_001368290
- Peptide Label: isoform 4
- UniProtKB: B7XG50 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001355220   ⟸   NM_001368291
- Peptide Label: isoform 5
- UniProtKB: B7XG50 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344580   ⟸   NM_001357651
- Peptide Label: isoform 3
- UniProtKB: B7XG50 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344579   ⟸   NM_001357650
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001355221   ⟸   NM_001368292
- Peptide Label: isoform 6
RefSeq Acc Id: ENSMUSP00000145737   ⟸   ENSMUST00000206398
RefSeq Acc Id: ENSMUSP00000103560   ⟸   ENSMUST00000107927
RefSeq Acc Id: ENSMUSP00000146329   ⟸   ENSMUST00000205422
RefSeq Acc Id: ENSMUSP00000145700   ⟸   ENSMUST00000205359
RefSeq Acc Id: XP_036009410   ⟸   XM_036153517
- Peptide Label: isoform X7
- UniProtKB: B7XG50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009409   ⟸   XM_036153516
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036009412   ⟸   XM_036153519
- Peptide Label: isoform X15
RefSeq Acc Id: XP_036009411   ⟸   XM_036153518
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036009408   ⟸   XM_036153515
- Peptide Label: isoform X2
Protein Domains
Golgi associated RAB2 interactor protein-like Rab2B-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1L3C1-F1-model_v2 AlphaFold A1L3C1 1-212 view protein structure

Promoters
RGD ID:8663869
Promoter ID:EPDNEW_M9966
Type:initiation region
Name:Fam71e1_1
Description:Mus musculus family with sequence similarity 71, member E1 ,transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38744,496,661 - 44,496,721EPDNEW
RGD ID:6841122
Promoter ID:MM_KWN:50263
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000056413,   ENSMUST00000085440,   ENSMUST00000118808,   NM_028169,   OTTMUST00000079002,   OTTMUST00000079003,   OTTMUST00000079004,   UC009GPP.1,   UC009GPQ.1,   UC009GPR.1,   UC009GPS.1,   UC009GPT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36751,751,461 - 51,752,077 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922788 AgrOrtholog
Ensembl Genes ENSMUSG00000051113 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000107927 ENTREZGENE
  ENSMUST00000107927.5 UniProtKB/Swiss-Prot
  ENSMUST00000205359 ENTREZGENE
  ENSMUST00000205359.2 UniProtKB/TrEMBL
  ENSMUST00000205422.2 UniProtKB/TrEMBL
  ENSMUST00000206398.2 UniProtKB/TrEMBL
InterPro DUF3699 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:75538 UniProtKB/Swiss-Prot
MGD MGI:1922788 ENTREZGENE
NCBI Gene 75538 ENTREZGENE
PANTHER PROTEIN FAM71E1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3699 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Garin5a PhenoGen
UniProt A0A0U1RNU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RNX3_MOUSE UniProtKB/TrEMBL
  A1L3C1 ENTREZGENE
  B7XG50 ENTREZGENE, UniProtKB/TrEMBL
  E9QKI6 ENTREZGENE
  F71E1_MOUSE UniProtKB/Swiss-Prot
  Q0P5X9 ENTREZGENE
  Q9DA33_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9QKI6 UniProtKB/Swiss-Prot
  Q0P5X9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-14 Garin5a  golgi associated RAB2 interactor 5A  Fam71e1  family with sequence similarity 71, member E1  Symbol and/or name updated 27372883 PROVISIONAL