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Gene: Sema3b (semaphorin 3B) Rattus norvegicus

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Symbol:

Sema3b

Name:

semaphorin 3B

RGD ID:

1310079

Description:

Predicted to enable chemorepellent activity; neuropilin binding activity; and semaphorin receptor binding activity. Predicted to be involved in several processes, including axon guidance; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in extracellular region. Predicted to be active in plasma membrane. Orthologous to human SEMA3B (semaphorin 3B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC363142; sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; semaphorin-3B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SEMA3B (semaphorin 3B)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther
Mus musculus (house mouse):	Sema3b (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sema3b (semaphorin 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SEMA3B (semaphorin 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SEMA3B (semaphorin 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sema3b (semaphorin 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SEMA3B (semaphorin 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SEMA3B (semaphorin 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sema3b (semaphorin 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sema3b (semaphorin 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SEPTIN1 (septin 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SEMA3B (semaphorin 3B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sema3b (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sema3b (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sema2a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Sema2a	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	Sema2b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|PANTHER)
Caenorhabditis elegans (roundworm):	smp-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	smp-1	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	sema3b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	sema3b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,150,307 - 117,161,570 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	117,150,589 - 117,157,658 (-)	Ensembl				GRCr8
mRatBN7.2	8	108,271,663 - 108,280,326 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,271,666 - 108,282,919 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	113,898,774 - 113,905,848 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,097,931 - 112,105,006 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	109,940,713 - 109,947,788 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,353,791 - 116,362,655 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,354,073 - 116,361,343 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	115,710,050 - 115,719,431 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	112,845,709 - 112,852,565 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	107,578,526 - 107,585,547 (-)	NCBI		Celera
RGSC_v3.1	8	112,864,748 - 112,872,108 (-)	NCBI
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Endometrial Neoplasms (ISO)

neuroblastoma (ISO)

Neurodevelopmental Disorders (ISO)

substance abuse (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

actinomycin D (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

atrazine (EXP)

belinostat (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

beta-naphthoflavone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Bisphenol Z (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

cocaine (EXP,ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

diethyl malate (ISO)

dorsomorphin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

entinostat (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

glycidol (EXP)

hydrogen peroxide (ISO)

Indeno[1,2,3-cd]pyrene (ISO)

indometacin (ISO)

iron dichloride (ISO)

ketoconazole (ISO)

L-methionine (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

methotrexate (ISO)

mifepristone (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

Nutlin-3 (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phencyclidine (ISO)

phenobarbital (ISO)

phosgene (ISO)

picene (ISO)

piperonyl butoxide (ISO)

progesterone (ISO)

raloxifene (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tamoxifen (ISO)

telmisartan (ISO)

titanium dioxide (ISO)

tributylstannane (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

VX nerve agent (ISO)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IBA)

negative chemotaxis (IBA)

negative regulation of developmental process (IEA)

negative regulation of multicellular organismal process (IEA)

neural crest cell migration (IBA)

positive regulation of cell migration (IBA)

regulation of anatomical structure morphogenesis (IEA)

regulation of multicellular organismal development (IEA)

regulation of plasma membrane bounded cell projection organization (IEA)

semaphorin-plexin signaling pathway (IBA)

Cellular Component

extracellular region (IEA)

plasma membrane (IBA)

Molecular Function

chemorepellent activity (IBA)

neuropilin binding (IBA)

protein binding (ISO)

semaphorin receptor binding (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Transcriptional changes common to human cocaine, cannabis and phencyclidine abuse.	Lehrmann E, etal., PLoS One. 2006 Dec 27;1(1):e114. doi: 10.1371/journal.pone.0000114.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23376485

Genomics

Comparative Map Data

Sema3b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,150,307 - 117,161,570 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	117,150,589 - 117,157,658 (-)	Ensembl				GRCr8
mRatBN7.2	8	108,271,663 - 108,280,326 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,271,666 - 108,282,919 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	113,898,774 - 113,905,848 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,097,931 - 112,105,006 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	109,940,713 - 109,947,788 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,353,791 - 116,362,655 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,354,073 - 116,361,343 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	115,710,050 - 115,719,431 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	112,845,709 - 112,852,565 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	107,578,526 - 107,585,547 (-)	NCBI		Celera
RGSC_v3.1	8	112,864,748 - 112,872,108 (-)	NCBI
Cytogenetic Map	8	q32	NCBI

SEMA3B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	50,260,226 - 50,277,546 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	50,267,542 - 50,277,546 (+)	Ensembl			hg38	GRCh38
GRCh37	3	50,305,084 - 50,314,977 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	50,280,044 - 50,289,577 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	50,280,043 - 50,289,574	NCBI
Celera	3	50,277,865 - 50,287,398 (+)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	50,360,724 - 50,370,309 (+)	NCBI		HuRef
CHM1_1	3	50,257,309 - 50,266,855 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	50,289,561 - 50,306,895 (+)	NCBI		T2T-CHM13v2.0

Sema3b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	107,474,868 - 107,486,440 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	107,474,873 - 107,486,428 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	107,597,674 - 107,609,241 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	107,597,674 - 107,609,229 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	107,500,446 - 107,511,572 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	107,456,456 - 107,463,503 (-)	NCBI		MGSCv36	mm8
Celera	9	107,206,897 - 107,218,025 (-)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	58.31	NCBI

Sema3b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	2,085,319 - 2,093,499 (+)	Ensembl
ChiLan1.0	NW_004955532	2,083,457 - 2,093,327 (+)	NCBI	ChiLan1.0	ChiLan1.0

SEMA3B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	50,250,324 - 50,260,206 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	50,255,405 - 50,264,981 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	50,196,147 - 50,205,744 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	51,422,950 - 51,439,886 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	51,430,287 - 51,439,886 (+)	Ensembl			panPan2	panpan1.1

SEMA3B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	39,058,708 - 39,067,277 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	39,059,245 - 39,065,661 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	38,974,188 - 38,988,336 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	39,409,187 - 39,423,343 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	39,414,753 - 39,422,185 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	38,777,009 - 38,791,156 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	39,180,520 - 39,194,640 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	39,460,589 - 39,474,738 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sema3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	65,041,922 - 65,057,875 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	1,802,982 - 1,818,736 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	1,806,535 - 1,818,352 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEMA3B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	32,740,802 - 32,749,621 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	32,737,100 - 32,749,633 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,919,463 - 35,927,775 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEMA3B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	11,652,766 - 11,664,902 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	11,656,918 - 11,665,418 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	155,321,955 - 155,334,090 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sema3b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	4,131,057 - 4,142,374 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	4,131,329 - 4,142,126 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sema3b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	98,913,417 - 98,923,095 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sema3b
79 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	59
Count of miRNA genes:	48
Interacting mature miRNAs:	57
Transcripts:	ENSRNOT00000066296
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	111249511	117802327	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

RH131906

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,271,751 - 108,271,957 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,353,880 - 116,354,085	NCBI	Rnor6.0
Rnor_5.0	8	115,710,139 - 115,710,344	UniSTS	Rnor5.0
RGSC_v3.4	8	112,845,518 - 112,845,723	UniSTS	RGSC3.4
Celera	8	107,578,335 - 107,578,540	UniSTS
RH 3.4 Map	8	1118.6	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	51	59	6	315	151	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001079942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC139927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC129103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066296 ⟹ ENSRNOP00000060214

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	117,150,589 - 117,157,658 (-)	Ensembl
mRatBN7.2 Ensembl	8	108,271,666 - 108,282,919 (-)	Ensembl
Rnor_6.0 Ensembl	8	116,354,073 - 116,361,343 (-)	Ensembl

RefSeq Acc Id:

NM_001079942 ⟹ NP_001073411

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,587 - 117,157,658 (-)	NCBI
mRatBN7.2	8	108,271,943 - 108,279,014 (-)	NCBI
Rnor_6.0	8	116,354,071 - 116,361,343 (-)	NCBI
Rnor_5.0	8	115,710,050 - 115,719,431 (-)	NCBI
RGSC_v3.4	8	112,845,709 - 112,852,565 (-)	RGD
Celera	8	107,578,526 - 107,585,547 (-)	RGD

Sequence:

show sequence

GTCTCTGATTGTGGCCAGGCGGGGCACCCTTGGTGGAGAGGAAAACGATCCCGGGGCAGAGTCC
AGGGCTGCCGAAGGCTCCTCCACACGCCTGCTGAACCCTGAGCGCCCTGTGCTGCCGGCATGGG
GCGGGCTGAGGCCGCCGCCATGATCCCAGGCCTGGCCCTTCTCTGGGTAGCAGGGCTGGGGGAT
GCTGCCCCTAACCTTCCCCGCCTTCGGCTCTCCTTTCAAGAACTACAGGCCCAGCATGGCATCC
GAACCTTCAGGCTGGAGCGGACCTGCTGTTATGAAGCCTTGCTGGTGGATGAGGAGCGGGGGCG
CCTGTTTGTGGGTGCTGAGAACCACGTGGCTTCCCTCAGCCTGGACAACATCAGCAAGCGAGCC
AAGAAGCTGGCCTGGCCCGCCCCTGTGGAATGGCGTGAAGAATGCAACTGGGCAGGGAAGGACA
TTGGTACGGAGTGCATGAACTTCGTGAAGCTGTTGCATGCCTACAACCACACCCACCTGCTGGC
CTGCGGCACAGGGGCCTTCCACCCCACCTGTGCATTTGTGGAGGTGGGCCACCGGCTGGAGGAA
CCCATGCTCCGCCTGGACCTGAGGAAGCTCGAGGATGGCAAGGGAAAGAGTCCATATGACCCAA
GGCACCGGGCTGCCTCGGTGCTGGTGGGGGAAGAGCTGTATTCCGGGGTGGCGGCGGACCTTAT
GGGCCGGGACTTTACCATCTTTCGAAGCTTGGGTCAGAATCCGAGTCTCCGAACAGAGCCCCAT
GATTCCCGCTGGCTCAATGAACCCAAGTTTGTCAAGGTCTTTTGGATCCCAGAGAGCGAGAACC
CTGATGACGATAAAATCTATTTCTTCTTCCGTGAGTCCGCAGTGGAAGCGGCACCAGCAATGGG
GCGCATGACTGTGTCTCGTGTTGGTCAGATCTGCCGGAATGACCTGGGTGGCCAGCGGAGCTTG
GTCAACAAGTGGACCACATTTCTGAAGGCGCGGCTTGTATGCTCAGTACCTGGAGTTGAGGGTG
ACACCCACTTTGACCAACTTCAGGATGTTTTCCTTTTGTCCTCCCGAGACCGCCAGACACCTTT
TCTCTATGCTGTCTTCTCCACCTCCAGTGGCATCTTCCAGGGCTCTGCTGTGTGCGTGTACAGC
ATGAACGACGTGCGCCGAGCCTTCTTGGGACCTTTTGCTCACAAAGAGGGGCCTACACATCAGT
GGGTGTCCTACCAGGGTCGGGTACCCTACCCAAGACCTGGCATGTGCCCCAGCAAGACCTTTGG
CACCTTCAGCTCCACCAAGGACTTCCCAGATGATGTTATCCAGTTTGCTCGGAACCACCCCCTC
ATGTACAACTCAGTCCTGCCCATGGGGGGGCGCCCTCTCTTCCTACAAGTGGGAGCTGGGTACA
CCTTCACCCAGATCGCTGCAGACCGGGTAGCAGCAGCCGATGGACACTACGATGTGCTCTTCAT
CGGCACAGATGTGGGCACGGTGCTGAAAGTCATCTCAGTCCCCAAGGGCAGCCGACCTAACTCG
GAAGGACTTCTCCTGGAAGAGCTGCAGGTGTTTGAGGACTCTGCTGCTATCACCAGCATGCAAA
TCTCCTCGAAAAGGCACCAGCTCTACATAGCATCACCCAGCGCAGTGGCCCAGATTGCTTTACA
TCGCTGCCCTGCCCTAGGCCGCGCCTGCGCAGAATGCTGCTTGGCCCGTGACCCCTACTGCGCC
TGGGATGGATCAGCCTGCACACGCTTCCAGCCTACTGCCAAGAGGCGGTTCCGGAGGCAAGACA
TAAGGAATGGCAACCCCAGCACCCTGTGCTCTGGGGACCCCTCTCACTCTGTGCTGCTGGAGAG
GAAGGTCTTAGGTGTGGAGAGGGGCAGCGCGTTTCTGGAGTGTGAGCCCCGCTCGCTCCAGGCG
CATGTGGAATGGACCTTCCATCGTGCAGGGGAGGCAGCTCACACCCAGGTGCTGGCTGAGGAGC
GGGTAGAGCGCACTGCACGGGGGCTGCTGTTGCGGGGGCTGCGGCGCCAGGACTCTGGCGTGTA
TCTGTGCGTCGCGGTTGAACAAGGCTTTTCACAACCACTGCGTCGCCTGGTGCTGCACGTGCTG
AGTGCGGCACAGGCTGAACGACTGGCGAGGGCAGAGGAGGCAGCAGTTCCCGCACCACCAGGTC
CTAAACTCTGGTACCGGGACTTCCTGCAGCTGGTGGAGCCAGGCGGTGGTGGAGGTGCAAACTC
CCTGCGAATGTGCCGCCCGCAGCCCGGGCCCCACTCTGTGGCAGCAGATTCACGTCGTAAGGGT
CGCAACAGGCGGATGCATGTCTCTGAGCTGCGTGCTGAACGTGGACCACGTAGCGCAGCTCACT
GGTGACTCGGCTGTCCCCATACTGGGGACCAGGCTGGATATGACACACCGAAGAGGGGGCAGAT
AGATGCCAGGAAGACAGATGAGTTGTGGCTGGGGCACACTGAGATCGTTGGGCCAACGGAGACA
ACTAACCCATACATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017595747 ⟹ XP_017451236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,161,517 (-)	NCBI
mRatBN7.2	8	108,271,663 - 108,280,326 (-)	NCBI
Rnor_6.0	8	116,353,791 - 116,362,655 (-)	NCBI

Sequence:

show sequence

AGTTCTTGGTGGAGAACGGGAAGGCAGCCGTGTCAGCCTCACAGACTTCTAGAACCTGAGAAGA
GGCTCAGATCCCGGGGCAGAGTCCAGGGCTGCCGAAGGCTCCTCCACACGCCTGCTGAACCCTG
AGCGCCCTGTGCTGCCGGCATGGGGCGGGCTGAGGCCGCCGCCATGATCCCAGGCCTGGCCCTT
CTCTGGGTAGCAGGGCTGGGGGATGCTGCCCCTAACCTTCCCCGCCTTCGGCTCTCCTTTCAAG
AACTACAGGCCCAGCATGGCATCCGAACCTTCAGGCTGGAGCGGACCTGCTGTTATGAAGCCTT
GCTGGTGGATGAGGAGCGGGGGCGCCTGTTTGTGGGTGCTGAGAACCACGTGGCTTCCCTCAGC
CTGGACAACATCAGCAAGCGAGCCAAGAAGCTGGCCTGGCCCGCCCCTGTGGAATGGCGTGAAG
AATGCAACTGGGCAGGGAAGGACATTGGTACGGAGTGCATGAACTTCGTGAAGCTGTTGCATGC
CTACAACCACACCCACCTGCTGGCCTGCGGCACAGGGGCCTTCCACCCCACCTGTGCATTTGTG
GAGGTGGGCCACCGGCTGGAGGAACCCATGCTCCGCCTGGACCTGAGGAAGCTCGAGGATGGCA
AGGGAAAGAGTCCATATGACCCAAGGCACCGGGCTGCCTCGGTGCTGGTGGGGGAAGAGCTGTA
TTCCGGGGTGGCGGCGGACCTTATGGGCCGGGACTTTACCATCTTTCGAAGCTTGGGTCAGAAT
CCGAGTCTCCGAACAGAGCCCCATGATTCCCGCTGGCTCAATGAACCCAAGTTTGTCAAGGTCT
TTTGGATCCCAGAGAGCGAGAACCCTGATGACGATAAAATCTATTTCTTCTTCCGTGAGTCCGC
AGTGGAAGCGGCACCAGCAATGGGGCGCATGACTGTGTCTCGTGTTGGTCAGATCTGCCGGAAT
GACCTGGGTGGCCAGCGGAGCTTGGTCAACAAGTGGACCACATTTCTGAAGGCGCGGCTTGTAT
GCTCAGTACCTGGAGTTGAGGGTGACACCCACTTTGACCAACTTCAGGATGTTTTCCTTTTGTC
CTCCCGAGACCGCCAGACACCTTTTCTCTATGCTGTCTTCTCCACCTCCAGTGGCATCTTCCAG
GGCTCTGCTGTGTGCGTGTACAGCATGAACGACGTGCGCCGAGCCTTCTTGGGACCTTTTGCTC
ACAAAGAGGGGCCTACACATCAGTGGGTGTCCTACCAGGGTCGGGTACCCTACCCAAGACCTGG
CATGTGCCCCAGCAAGACCTTTGGCACCTTCAGCTCCACCAAGGACTTCCCAGATGATGTTATC
CAGTTTGCTCGGAACCACCCCCTCATGTACAACTCAGTCCTGCCCATGGGGGGGCGCCCTCTCT
TCCTACAAGTGGGAGCTGGGTACACCTTCACCCAGATCGCTGCAGACCGGGTAGCAGCAGCCGA
TGGACACTACGATGTGCTCTTCATCGGCACAGATGTGGGCACGGTGCTGAAAGTCATCTCAGTC
CCCAAGGGCAGCCGACCTAACTCGGAAGGACTTCTCCTGGAAGAGCTGCAGGTGTTTGAGGACT
CTGCTGCTATCACCAGCATGCAAATCTCCTCGAAAAGGCACCAGCTCTACATAGCATCACCCAG
CGCAGTGGCCCAGATTGCTTTACATCGCTGCCCTGCCCTAGGCCGCGCCTGCGCAGAATGCTGC
TTGGCCCGTGACCCCTACTGCGCCTGGGATGGATCAGCCTGCACACGCTTCCAGCCTACTGCCA
AGAGGCGGTTCCGGAGGCAAGACATAAGGAATGGCAACCCCAGCACCCTGTGCTCTGGGGACCC
CTCTCACTCTGTGCTGCTGGAGAGGAAGGTCTTAGGTGTGGAGAGGGGCAGCGCGTTTCTGGAG
TGTGAGCCCCGCTCGCTCCAGGCGCATGTGGAATGGACCTTCCATCGTGCAGGGGAGGCAGCTC
ACACCCAGGTGCTGGCTGAGGAGCGGGTAGAGCGCACTGCACGGGGGCTGCTGTTGCGGGGGCT
GCGGCGCCAGGACTCTGGCGTGTATCTGTGCGTCGCGGTTGAACAAGGCTTTTCACAACCACTG
CGTCGCCTGGTGCTGCACGTGCTGAGTGCGGCACAGGCTGAACGACTGGCGAGGGCAGAGGAGG
CAGCAGTTCCCGCACCACCAGGTCCTAAACTCTGGTACCGGGACTTCCTGCAGCTGGTGGAGCC
AGGCGGTGGTGGAGGTGCAAACTCCCTGCGAATGTGCCGCCCGCAGCCCGGGCCCCACTCTGTG
GCAGCAGATTCACGTCGTAAGGGTCGCAACAGGCGGATGCATGTCTCTGAGCTGCGTGCTGAAC
GTGGACCACGTAGCGCAGCTCACTGGTGACTCGGCTGTCCCCATACTGGGGACCAGGCTGGATA
TGACACACCGAAGAGGGGGCAGATAGATGCCAGGAAGACAGATGAGTTGTGGCTGGGGCACACT
GAGATCGTTGGGCCAACGGAGACAACTAACCCATACATGAACCCTGGCCCAAGTGTAGCTTATT
TATTAACAAGATAACCCGTGAATGTATTCCTGGAAGAGTGGCCCAAGCTCAATTCAGGATCTAA
CCTGGAGGGAGGGGACAAGAAGTGGGGCTCCAGAGTGGAGCGGAACCAGAGAGATGTCTTGGGT
GGCAGCCCTGGGGAAAGCATTCTCTTTCTTGGGCATCGAGGAGAAAGCTGTGAACAGATTAGGC
TGTCCAGTGTGGGGTGAGGCAGGCCAACTGTACTAAAGTAATACAATAAACACATTATCAGCTG
A

hide sequence

RefSeq Acc Id:

XM_063265824 ⟹ XP_063121894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,161,570 (-)	NCBI

RefSeq Acc Id:

XM_063265825 ⟹ XP_063121895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,161,560 (-)	NCBI

RefSeq Acc Id:

XM_063265826 ⟹ XP_063121896

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,161,509 (-)	NCBI

RefSeq Acc Id:

XM_063265827 ⟹ XP_063121897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,159,242 (-)	NCBI

RefSeq Acc Id:

XM_063265828 ⟹ XP_063121898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,161,560 (-)	NCBI

RefSeq Acc Id:

XM_063265829 ⟹ XP_063121899

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,159,661 (-)	NCBI

RefSeq Acc Id:

XM_063265830 ⟹ XP_063121900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,161,562 (-)	NCBI

RefSeq Acc Id:

XM_063265832 ⟹ XP_063121902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,161,562 (-)	NCBI

RefSeq Acc Id:

XM_063265833 ⟹ XP_063121903

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,161,562 (-)	NCBI

RefSeq Acc Id:

XM_063265834 ⟹ XP_063121904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,161,563 (-)	NCBI

RefSeq Acc Id:

XM_063265835 ⟹ XP_063121905

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,150,307 - 117,159,988 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001073411	(Get FASTA)	NCBI Sequence Viewer
	NP_001420831	(Get FASTA)	NCBI Sequence Viewer
	NP_001420832	(Get FASTA)	NCBI Sequence Viewer
	NP_001420833	(Get FASTA)	NCBI Sequence Viewer
	NP_001420834	(Get FASTA)	NCBI Sequence Viewer
	NP_001420835	(Get FASTA)	NCBI Sequence Viewer
	XP_017451236	(Get FASTA)	NCBI Sequence Viewer
	XP_063121894	(Get FASTA)	NCBI Sequence Viewer
	XP_063121895	(Get FASTA)	NCBI Sequence Viewer
	XP_063121896	(Get FASTA)	NCBI Sequence Viewer
	XP_063121897	(Get FASTA)	NCBI Sequence Viewer
	XP_063121898	(Get FASTA)	NCBI Sequence Viewer
	XP_063121899	(Get FASTA)	NCBI Sequence Viewer
	XP_063121900	(Get FASTA)	NCBI Sequence Viewer
	XP_063121902	(Get FASTA)	NCBI Sequence Viewer
	XP_063121903	(Get FASTA)	NCBI Sequence Viewer
	XP_063121904	(Get FASTA)	NCBI Sequence Viewer
	XP_063121905	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI29104	(Get FASTA)	NCBI Sequence Viewer
	EDL77231	(Get FASTA)	NCBI Sequence Viewer
	EDL77232	(Get FASTA)	NCBI Sequence Viewer
	EDL77233	(Get FASTA)	NCBI Sequence Viewer
	EDL77234	(Get FASTA)	NCBI Sequence Viewer
	EDL77235	(Get FASTA)	NCBI Sequence Viewer
	EDL77236	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060214
	ENSRNOP00000060214.1

RefSeq Acc Id:	NP_001073411 ⟸ NM_001079942
- Peptide Label:	precursor
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRAEAAAMIPGLALLWVAGLGDAAPNLPRLRLSFQELQAQHGIRTFRLERTCCYEALLVDEER GRLFVGAENHVASLSLDNISKRAKKLAWPAPVEWREECNWAGKDIGTECMNFVKLLHAYNHTHL LACGTGAFHPTCAFVEVGHRLEEPMLRLDLRKLEDGKGKSPYDPRHRAASVLVGEELYSGVAAD LMGRDFTIFRSLGQNPSLRTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRESAVEAAPA MGRMTVSRVGQICRNDLGGQRSLVNKWTTFLKARLVCSVPGVEGDTHFDQLQDVFLLSSRDRQT PFLYAVFSTSSGIFQGSAVCVYSMNDVRRAFLGPFAHKEGPTHQWVSYQGRVPYPRPGMCPSKT FGTFSSTKDFPDDVIQFARNHPLMYNSVLPMGGRPLFLQVGAGYTFTQIAADRVAAADGHYDVL FIGTDVGTVLKVISVPKGSRPNSEGLLLEELQVFEDSAAITSMQISSKRHQLYIASPSAVAQIA LHRCPALGRACAECCLARDPYCAWDGSACTRFQPTAKRRFRRQDIRNGNPSTLCSGDPSHSVLL ERKVLGVERGSAFLECEPRSLQAHVEWTFHRAGEAAHTQVLAEERVERTARGLLLRGLRRQDSG VYLCVAVEQGFSQPLRRLVLHVLSAAQAERLARAEEAAVPAPPGPKLWYRDFLQLVEPGGGGGA NSLRMCRPQPGPHSVAADSRRKGRNRRMHVSELRAERGPRSAAHW hide sequence

RefSeq Acc Id:	XP_017451236 ⟸ XM_017595747
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRAEAAAMIPGLALLWVAGLGDAAPNLPRLRLSFQELQAQHGIRTFRLERTCCYEALLVDEER GRLFVGAENHVASLSLDNISKRAKKLAWPAPVEWREECNWAGKDIGTECMNFVKLLHAYNHTHL LACGTGAFHPTCAFVEVGHRLEEPMLRLDLRKLEDGKGKSPYDPRHRAASVLVGEELYSGVAAD LMGRDFTIFRSLGQNPSLRTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRESAVEAAPA MGRMTVSRVGQICRNDLGGQRSLVNKWTTFLKARLVCSVPGVEGDTHFDQLQDVFLLSSRDRQT PFLYAVFSTSSGIFQGSAVCVYSMNDVRRAFLGPFAHKEGPTHQWVSYQGRVPYPRPGMCPSKT FGTFSSTKDFPDDVIQFARNHPLMYNSVLPMGGRPLFLQVGAGYTFTQIAADRVAAADGHYDVL FIGTDVGTVLKVISVPKGSRPNSEGLLLEELQVFEDSAAITSMQISSKRHQLYIASPSAVAQIA LHRCPALGRACAECCLARDPYCAWDGSACTRFQPTAKRRFRRQDIRNGNPSTLCSGDPSHSVLL ERKVLGVERGSAFLECEPRSLQAHVEWTFHRAGEAAHTQVLAEERVERTARGLLLRGLRRQDSG VYLCVAVEQGFSQPLRRLVLHVLSAAQAERLARAEEAAVPAPPGPKLWYRDFLQLVEPGGGGGA NSLRMCRPQPGPHSVAADSRRKGRNRRMHVSELRAERGPRSAAHW hide sequence

Ensembl Acc Id:

ENSRNOP00000060214 ⟸ ENSRNOT00000066296

RefSeq Acc Id:	XP_063121894 ⟸ XM_063265824
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063121904 ⟸ XM_063265834
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121903 ⟸ XM_063265833
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121902 ⟸ XM_063265832
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121900 ⟸ XM_063265830
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121895 ⟸ XM_063265825
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121898 ⟸ XM_063265828
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121896 ⟸ XM_063265826
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063121905 ⟸ XM_063265835
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121899 ⟸ XM_063265829
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121897 ⟸ XM_063265827
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHJ3 (UniProtKB/TrEMBL)

Protein Domains

Ig-like Sema

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZHJ3-F1-model_v2	AlphaFold	D3ZHJ3	1-749	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696277

Promoter ID:

EPDNEW_R6802

Type:

multiple initiation site

Name:

Sema3b_1

Description:

semaphorin 3B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	116,361,337 - 116,361,397	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310079	AgrOrtholog
BioCyc Gene	G2FUF-29185	BioCyc
Ensembl Genes	ENSRNOG00000016512	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066296	ENTREZGENE
	ENSRNOT00000066296.3	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	ligand-binding face of the semaphorins, domain 2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7100098	IMAGE-MGC_LOAD
InterPro	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Plexin-like_fold	UniProtKB/TrEMBL
	Semap_dom_sf	UniProtKB/TrEMBL
	Semaphorin	UniProtKB/TrEMBL
	Semaphorin/CD100_Ag	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
KEGG Report	rno:363142	UniProtKB/TrEMBL
MGC_CLONE	MGC:156709	IMAGE-MGC_LOAD
NCBI Gene	363142	ENTREZGENE
PANTHER	PTHR11036	UniProtKB/TrEMBL
	SEMAPHORIN-3B	UniProtKB/TrEMBL
Pfam	Sema	UniProtKB/TrEMBL
PhenoGen	Sema3b	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	SEMA	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016512	RatGTEx
SMART	PSI	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	Plexin repeat	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	D3ZHJ3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-21	Sema3b	semaphorin 3B	Sema3b	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Sema3b	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	Sema3b_predicted	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Sema3b_predicted	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD