Sema3b (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B) - Rat Genome Database

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Gene: Sema3b (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B) Mus musculus
Analyze
Symbol: Sema3b
Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
RGD ID: 1320779
MGI Page MGI
Description: Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including negative regulation of axon extension involved in axon guidance; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be located in extracellular region. Predicted to be active in plasma membrane. Is expressed in several structures, including genitourinary system; gut mucosa; nervous system; skeletal musculature; and tooth. Orthologous to human SEMA3B (semaphorin 3B).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AW208495; LUCA; LUCA-1; Se; sem; SemA; sema A; sema5; Semaa; semaphorin-3B; semaphorin-A; semaV
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,474,868 - 107,486,440 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,474,873 - 107,486,428 (-)EnsemblGRCm39 Ensembl
GRCm389107,597,674 - 107,609,241 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,597,674 - 107,609,229 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,500,446 - 107,511,572 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,456,456 - 107,463,503 (-)NCBIMGSCv36mm8
Celera9107,206,897 - 107,218,025 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map958.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl malate  (EXP)
dorsomorphin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
furan  (ISO)
gentamycin  (ISO)
glycidol  (ISO)
hydrogen peroxide  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
indometacin  (ISO)
iron dichloride  (ISO)
ketoconazole  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (EXP)
methotrexate  (ISO)
mifepristone  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (EXP)
phencyclidine  (ISO)
phenobarbital  (EXP)
phosgene  (EXP)
picene  (ISO)
piperonyl butoxide  (EXP)
progesterone  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
telmisartan  (ISO)
tributylstannane  (EXP)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Neuropilin-2 mediates axonal fasciculation, zonal segregation, but not axonal convergence, of primary accessory olfactory neurons. Cloutier JF, etal., Neuron 2002 Mar 14;33(6):877-92.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Characterization of the murine hyaluronidase gene region reveals complex organization and cotranscription of Hyal1 with downstream genes, Fus2 and Hyal3. Shuttleworth TL, etal., J Biol Chem 2002 Jun 21;277(25):23008-18. Epub 2002 Apr 02.
Additional References at PubMed
PMID:7748561   PMID:8633026   PMID:8812066   PMID:8817451   PMID:9753685   PMID:10349636   PMID:10985345   PMID:11042159   PMID:11074448   PMID:11076861   PMID:11231073   PMID:11487633  
PMID:11717452   PMID:12435358   PMID:12477932   PMID:14586460   PMID:14610273   PMID:14681479   PMID:15051154   PMID:15782199   PMID:15789413   PMID:15869472   PMID:16141072   PMID:16141073  
PMID:16202709   PMID:16284245   PMID:16602821   PMID:17145500   PMID:17626059   PMID:17942483   PMID:17971221   PMID:18287559   PMID:18356290   PMID:18489001   PMID:18617019   PMID:19812329  
PMID:20006658   PMID:20159958   PMID:21386911   PMID:21658587   PMID:21713436   PMID:21779340   PMID:21873635   PMID:22076636   PMID:22632726   PMID:22936999   PMID:22955271   PMID:22998873  
PMID:23341629   PMID:23534961   PMID:23902858   PMID:23991118   PMID:24952961   PMID:25485759   PMID:25721514   PMID:25826454   PMID:26302206   PMID:26319580   PMID:26633812   PMID:26723579  
PMID:26830346   PMID:29031500   PMID:29972687   PMID:30628891   PMID:31182634   PMID:32857879   PMID:35892177   PMID:36240771   PMID:36399562  


Genomics

Comparative Map Data
Sema3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,474,868 - 107,486,440 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,474,873 - 107,486,428 (-)EnsemblGRCm39 Ensembl
GRCm389107,597,674 - 107,609,241 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,597,674 - 107,609,229 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,500,446 - 107,511,572 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,456,456 - 107,463,503 (-)NCBIMGSCv36mm8
Celera9107,206,897 - 107,218,025 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map958.31NCBI
SEMA3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38350,267,652 - 50,277,546 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl350,267,558 - 50,277,546 (+)EnsemblGRCh38hg38GRCh38
GRCh37350,305,084 - 50,314,977 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,280,044 - 50,289,577 (+)NCBINCBI36Build 36hg18NCBI36
Build 34350,280,043 - 50,289,574NCBI
Celera350,277,865 - 50,287,398 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef350,360,724 - 50,370,309 (+)NCBIHuRef
CHM1_1350,257,309 - 50,266,855 (+)NCBICHM1_1
T2T-CHM13v2.0350,296,986 - 50,306,895 (+)NCBIT2T-CHM13v2.0
Sema3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,150,307 - 117,161,570 (-)NCBIGRCr8
mRatBN7.28108,271,663 - 108,280,326 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,271,666 - 108,282,919 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8113,898,774 - 113,905,848 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,097,931 - 112,105,006 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08109,940,713 - 109,947,788 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,353,791 - 116,362,655 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,354,073 - 116,361,343 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,710,050 - 115,719,431 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,845,709 - 112,852,565 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18112,864,748 - 112,872,108 (-)NCBI
Celera8107,578,526 - 107,585,547 (-)NCBICelera
Cytogenetic Map8q32NCBI
Sema3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,085,319 - 2,093,499 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,083,457 - 2,093,327 (+)NCBIChiLan1.0ChiLan1.0
SEMA3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2250,250,324 - 50,260,206 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1350,255,405 - 50,264,981 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0350,196,147 - 50,205,744 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1351,422,950 - 51,439,886 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,430,287 - 51,439,886 (+)Ensemblpanpan1.1panPan2
SEMA3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,058,708 - 39,067,277 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,059,245 - 39,065,661 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2038,974,188 - 38,988,336 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,409,187 - 39,423,343 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,414,753 - 39,422,185 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12038,777,009 - 38,791,156 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,180,520 - 39,194,640 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,460,589 - 39,474,738 (-)NCBIUU_Cfam_GSD_1.0
Sema3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560265,041,922 - 65,057,875 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,802,982 - 1,818,736 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,806,535 - 1,818,352 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEMA3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,740,802 - 32,749,621 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,737,100 - 32,749,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,919,463 - 35,927,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEMA3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,652,766 - 11,664,902 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,656,918 - 11,665,418 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,321,955 - 155,334,090 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sema3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247304,131,057 - 4,142,374 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247304,131,329 - 4,142,126 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sema3b
344 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1553
Count of miRNA genes:450
Interacting mature miRNAs:574
Transcripts:ENSMUST00000073448, ENSMUST00000102529, ENSMUST00000102530, ENSMUST00000102531, ENSMUST00000102532, ENSMUST00000123926
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse

Markers in Region
X85990  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,598,444 - 107,598,598UniSTSGRCm38
MGSCv379107,500,775 - 107,500,929UniSTSGRCm37
Celera9107,207,226 - 107,207,380UniSTS
Cytogenetic Map9F1UniSTS
cM Map960.3UniSTS
Whitehead_YAC9 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_111986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK014333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB116052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB787270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX515696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY138852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY341101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN538654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN539668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X85990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000073448   ⟹   ENSMUSP00000073152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,475,553 - 107,483,855 (-)Ensembl
GRCm38.p6 Ensembl9107,598,354 - 107,606,656 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102529   ⟹   ENSMUSP00000099588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,475,554 - 107,482,601 (-)Ensembl
GRCm38.p6 Ensembl9107,598,355 - 107,605,402 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102530   ⟹   ENSMUSP00000099589
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,475,552 - 107,486,398 (-)Ensembl
GRCm38.p6 Ensembl9107,598,353 - 107,609,199 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102531   ⟹   ENSMUSP00000099590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,475,554 - 107,486,392 (-)Ensembl
GRCm38.p6 Ensembl9107,598,355 - 107,609,193 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102532   ⟹   ENSMUSP00000099591
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,475,416 - 107,486,428 (-)Ensembl
GRCm38.p6 Ensembl9107,598,217 - 107,609,229 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123926   ⟹   ENSMUSP00000137952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,474,873 - 107,482,720 (-)Ensembl
GRCm38.p6 Ensembl9107,597,674 - 107,605,521 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193180   ⟹   ENSMUSP00000141726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,480,503 - 107,484,115 (-)Ensembl
GRCm38.p6 Ensembl9107,603,304 - 107,606,916 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,478,814 - 107,479,365 (-)Ensembl
GRCm38.p6 Ensembl9107,601,615 - 107,602,166 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193551
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,482,290 - 107,484,384 (-)Ensembl
GRCm38.p6 Ensembl9107,605,091 - 107,607,185 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194433   ⟹   ENSMUSP00000141403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,480,348 - 107,482,468 (-)Ensembl
GRCm38.p6 Ensembl9107,603,149 - 107,605,269 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194606   ⟹   ENSMUSP00000141928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,481,365 - 107,483,880 (-)Ensembl
GRCm38.p6 Ensembl9107,604,166 - 107,606,681 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195057   ⟹   ENSMUSP00000141390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,482,246 - 107,486,419 (-)Ensembl
GRCm38.p6 Ensembl9107,605,047 - 107,609,220 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195472
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,477,002 - 107,478,505 (-)Ensembl
GRCm38.p6 Ensembl9107,599,803 - 107,601,306 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195662   ⟹   ENSMUSP00000141614
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,480,535 - 107,483,882 (-)Ensembl
GRCm38.p6 Ensembl9107,603,336 - 107,606,683 (-)Ensembl
RefSeq Acc Id: NM_001042779   ⟹   NP_001036244
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,486,440 (-)NCBI
GRCm389107,597,674 - 107,609,241 (-)NCBI
MGSCv379107,500,446 - 107,511,572 (-)RGD
Celera9107,206,456 - 107,218,025 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001291537   ⟹   NP_001278466
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,484,291 (-)NCBI
GRCm389107,597,674 - 107,607,092 (-)NCBI
Celera9107,206,456 - 107,218,025 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291538   ⟹   NP_001278467
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,484,291 (-)NCBI
GRCm389107,597,674 - 107,607,092 (-)NCBI
Celera9107,206,456 - 107,218,025 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291539   ⟹   NP_001278468
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,486,440 (-)NCBI
GRCm389107,597,674 - 107,609,241 (-)NCBI
Celera9107,206,456 - 107,218,025 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009153   ⟹   NP_033179
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,868 - 107,482,518 (-)NCBI
GRCm389107,597,674 - 107,605,402 (-)NCBI
MGSCv379107,500,446 - 107,511,572 (-)RGD
Celera9107,206,456 - 107,218,025 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_111986
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,474,873 - 107,482,786 (-)NCBI
GRCm389107,597,674 - 107,605,587 (-)NCBI
Celera9107,206,456 - 107,218,025 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511664   ⟹   XP_006511727
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511665   ⟹   XP_006511728
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511666   ⟹   XP_006511729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511671   ⟹   XP_006511734
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511673   ⟹   XP_006511736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,480,552 (-)NCBI
GRCm389107,598,216 - 107,603,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242862   ⟹   XP_011241164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242863   ⟹   XP_011241165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242864   ⟹   XP_011241166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242865   ⟹   XP_011241167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242867   ⟹   XP_011241169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,483,907 (-)NCBI
GRCm389107,598,216 - 107,606,713 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313225   ⟹   XP_017168714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
GRCm389107,598,216 - 107,609,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154742   ⟹   XP_036010635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154743   ⟹   XP_036010636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,475,415 - 107,486,437 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001036244 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278466 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278467 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278468 (Get FASTA)   NCBI Sequence Viewer  
  NP_033179 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511727 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511728 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511729 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511734 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511736 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241164 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241165 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241166 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241167 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241169 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168714 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010635 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010636 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH90669 (Get FASTA)   NCBI Sequence Viewer  
  AAI50759 (Get FASTA)   NCBI Sequence Viewer  
  CAA59982 (Get FASTA)   NCBI Sequence Viewer  
  EDL21207 (Get FASTA)   NCBI Sequence Viewer  
  EDL21208 (Get FASTA)   NCBI Sequence Viewer  
  EDL21209 (Get FASTA)   NCBI Sequence Viewer  
  EDL21210 (Get FASTA)   NCBI Sequence Viewer  
  EDL21211 (Get FASTA)   NCBI Sequence Viewer  
  EDL21212 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000073152
  ENSMUSP00000073152.6
  ENSMUSP00000099588
  ENSMUSP00000099588.4
  ENSMUSP00000099589
  ENSMUSP00000099589.2
  ENSMUSP00000099590
  ENSMUSP00000099590.2
  ENSMUSP00000099591
  ENSMUSP00000099591.4
  ENSMUSP00000137952.2
  ENSMUSP00000141390.2
  ENSMUSP00000141403.2
  ENSMUSP00000141614.2
  ENSMUSP00000141726.2
  ENSMUSP00000141928.2
GenBank Protein Q62177 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001036244   ⟸   NM_001042779
- Peptide Label: precursor
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_033179   ⟸   NM_009153
- Peptide Label: precursor
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511728   ⟸   XM_006511665
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511729   ⟸   XM_006511666
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511734   ⟸   XM_006511671
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511727   ⟸   XM_006511664
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511736   ⟸   XM_006511673
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001278468   ⟸   NM_001291539
- Peptide Label: precursor
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278467   ⟸   NM_001291538
- Peptide Label: precursor
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278466   ⟸   NM_001291537
- Peptide Label: precursor
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241167   ⟸   XM_011242865
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241166   ⟸   XM_011242864
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241164   ⟸   XM_011242862
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241165   ⟸   XM_011242863
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241169   ⟸   XM_011242867
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168714   ⟸   XM_017313225
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000073152   ⟸   ENSMUST00000073448
RefSeq Acc Id: ENSMUSP00000141403   ⟸   ENSMUST00000194433
RefSeq Acc Id: ENSMUSP00000141726   ⟸   ENSMUST00000193180
RefSeq Acc Id: ENSMUSP00000137952   ⟸   ENSMUST00000123926
RefSeq Acc Id: ENSMUSP00000099591   ⟸   ENSMUST00000102532
RefSeq Acc Id: ENSMUSP00000099590   ⟸   ENSMUST00000102531
RefSeq Acc Id: ENSMUSP00000099589   ⟸   ENSMUST00000102530
RefSeq Acc Id: ENSMUSP00000099588   ⟸   ENSMUST00000102529
RefSeq Acc Id: ENSMUSP00000141614   ⟸   ENSMUST00000195662
RefSeq Acc Id: ENSMUSP00000141390   ⟸   ENSMUST00000195057
RefSeq Acc Id: ENSMUSP00000141928   ⟸   ENSMUST00000194606
RefSeq Acc Id: XP_036010635   ⟸   XM_036154742
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036010636   ⟸   XM_036154743
- Peptide Label: isoform X1
- UniProtKB: M9MMK0 (UniProtKB/TrEMBL),   Q0VGP2 (UniProtKB/TrEMBL)
Protein Domains
Ig-like   Ig-like C2-type   Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62177-F1-model_v2 AlphaFold Q62177 1-748 view protein structure

Promoters
RGD ID:6845131
Promoter ID:MM_KWN:58731
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:NM_009153,   UC009RMG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,507,731 - 107,508,231 (-)MPROMDB
RGD ID:6845132
Promoter ID:MM_KWN:58732
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:UC009RMH.1,   UC009RMI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,509,111 - 107,510,052 (-)MPROMDB
RGD ID:6845130
Promoter ID:MM_KWN:58733
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:ENSMUST00000073448,   ENSMUST00000102531,   NM_001042779
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,510,931 - 107,511,431 (-)MPROMDB
RGD ID:8670814
Promoter ID:EPDNEW_M13437
Type:initiation region
Name:Sema3b_2
Description:Mus musculus sema domain, immunoglobulin domain , short basicdomain, secreted, 3B , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13438  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,605,157 - 107,605,217EPDNEW
RGD ID:8670816
Promoter ID:EPDNEW_M13438
Type:initiation region
Name:Sema3b_1
Description:Mus musculus sema domain, immunoglobulin domain , short basicdomain, secreted, 3B , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13437  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,609,188 - 107,609,248EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107561 AgrOrtholog
Ensembl Genes ENSMUSG00000057969 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073448 ENTREZGENE
  ENSMUST00000073448.12 UniProtKB/TrEMBL
  ENSMUST00000102529 ENTREZGENE
  ENSMUST00000102529.10 UniProtKB/TrEMBL
  ENSMUST00000102530 ENTREZGENE
  ENSMUST00000102530.8 UniProtKB/TrEMBL
  ENSMUST00000102531 ENTREZGENE
  ENSMUST00000102531.7 UniProtKB/TrEMBL
  ENSMUST00000102532 ENTREZGENE
  ENSMUST00000102532.10 UniProtKB/TrEMBL
  ENSMUST00000123926 ENTREZGENE
  ENSMUST00000123926.8 UniProtKB/TrEMBL
  ENSMUST00000193180.6 UniProtKB/TrEMBL
  ENSMUST00000194433.6 UniProtKB/TrEMBL
  ENSMUST00000194606.2 UniProtKB/TrEMBL
  ENSMUST00000195057.2 UniProtKB/TrEMBL
  ENSMUST00000195662.6 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ligand-binding face of the semaphorins, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semaphorin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20347 UniProtKB/TrEMBL
MGD MGI:107561 ENTREZGENE
NCBI Gene 20347 ENTREZGENE
PANTHER PTHR11036 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEMAPHORIN-3B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sema3b PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Plexin repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF101912 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YW56_MOUSE UniProtKB/TrEMBL
  A0A0A6YWM9_MOUSE UniProtKB/TrEMBL
  A0A0A6YWW1_MOUSE UniProtKB/TrEMBL
  A0A0A6YXC1_MOUSE UniProtKB/TrEMBL
  A0A0G2JDD7_MOUSE UniProtKB/TrEMBL
  M0QWQ7_MOUSE UniProtKB/TrEMBL
  M9MMK0 ENTREZGENE, UniProtKB/TrEMBL
  Q0VGP2 ENTREZGENE, UniProtKB/TrEMBL
  Q62177 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9Q9Q1 UniProtKB/Swiss-Prot