Lins1 (lines homolog 1) - Rat Genome Database

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Gene: Lins1 (lines homolog 1) Rattus norvegicus
Analyze
Symbol: Lins1
Name: lines homolog 1
RGD ID: 1308792
Description: Predicted to be involved in cognition. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 27. Orthologous to human LINS1 (lines homolog 1); INTERACTS WITH amphetamine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: lines homolog (Drosophila); lines homolog 1 (Drosophila); lines homolog 2; lines homolog 2 (Drosophila); Lins; Lins2; LOC308704; RGD1308792; similar to WINS1 protein with Drosophila Lines (Lin) homologous domain
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81129,677,815 - 129,705,399 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1129,692,225 - 129,703,826 (+)EnsemblGRCr8
mRatBN7.21120,267,586 - 120,295,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,267,693 - 120,293,607 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1128,265,667 - 128,291,649 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,437,099 - 135,463,081 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01128,241,271 - 128,267,234 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01127,599,647 - 127,625,583 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,604,197 - 127,625,577 (+)Ensemblrn6Rnor6.0
Rnor_5.01128,674,717 - 128,701,711 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41121,162,852 - 121,169,099 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1112,470,441 - 112,496,377 (+)NCBICelera
RGSC_v3.11121,241,784 - 121,247,350 (+)NCBI
Cytogenetic Map1q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cognition  (ISO)

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23773660  


Genomics

Comparative Map Data
Lins1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81129,677,815 - 129,705,399 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1129,692,225 - 129,703,826 (+)EnsemblGRCr8
mRatBN7.21120,267,586 - 120,295,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,267,693 - 120,293,607 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1128,265,667 - 128,291,649 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,437,099 - 135,463,081 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01128,241,271 - 128,267,234 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01127,599,647 - 127,625,583 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,604,197 - 127,625,577 (+)Ensemblrn6Rnor6.0
Rnor_5.01128,674,717 - 128,701,711 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41121,162,852 - 121,169,099 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1112,470,441 - 112,496,377 (+)NCBICelera
RGSC_v3.11121,241,784 - 121,247,350 (+)NCBI
Cytogenetic Map1q22NCBI
LINS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3815100,566,924 - 100,602,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl15100,559,369 - 100,603,230 (-)Ensemblhg38GRCh38
GRCh3715101,107,129 - 101,142,389 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361598,926,958 - 98,959,927 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1577,522,681 - 77,555,652 (-)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1577,231,194 - 77,263,814 (-)NCBIHuRef
CHM1_115100,949,360 - 100,983,431 (-)NCBICHM1_1
T2T-CHM13v2.01598,321,577 - 98,357,861 (-)NCBIT2T-CHM13v2.0
Lins1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39766,339,565 - 66,367,004 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl766,339,637 - 66,367,004 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38766,689,817 - 66,717,256 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl766,689,889 - 66,717,256 (+)Ensemblmm10GRCm38
MGSCv37773,852,990 - 73,859,542 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36766,587,054 - 66,593,606 (+)NCBIMGSCv36mm8
Celera764,161,477 - 64,168,020 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map736.08NCBI
Lins1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541627,586,257 - 27,595,117 (-)Ensembl
ChiLan1.0NW_00495541627,585,172 - 27,609,780 (-)NCBIChiLan1.0ChiLan1.0
LINS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21690,160,094 - 90,194,720 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11593,859,699 - 93,895,045 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01579,293,426 - 79,328,691 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11598,583,906 - 98,616,407 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1598,583,906 - 98,616,407 (-)EnsemblpanPan2panpan1.1
LINS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1340,415,599 - 40,437,075 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl340,415,163 - 40,436,966 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha343,107,942 - 43,128,495 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0340,816,058 - 40,837,558 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl340,816,412 - 40,837,546 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1340,349,850 - 40,371,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0340,580,455 - 40,601,936 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0340,787,712 - 40,809,208 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LINS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1139,168,785 - 139,191,163 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11139,168,859 - 139,191,238 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21155,373,215 - 155,395,580 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LINS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12919,036,427 - 19,065,361 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2919,036,305 - 19,044,244 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605927,478,584 - 27,507,513 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lins1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247684,134,796 - 4,145,137 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247684,122,981 - 4,143,202 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lins1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12133,652,488 - 133,678,466 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lins1
243 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:130
Interacting mature miRNAs:138
Transcripts:ENSRNOT00000018463
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611176289080Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
631684Bp117Blood pressure QTL 1178.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1120082258165082258Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1112521556157521556Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1128019551173019551Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)1108680016153680016Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
631569Bp93Blood pressure QTL 930.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611131244255Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1127329268206393015Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1109493780193400781Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1112521556157521556Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1110389869155389869Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1124975316152612788Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1111949780160574007Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1110389869155389869Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1116099376191260518Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1111404407142582336Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1129182274174182274Rat

Markers in Region
RH143330  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21120,293,198 - 120,293,465 (+)MAPPERmRatBN7.2
Rnor_6.01127,625,174 - 127,625,440NCBIRnor6.0
Rnor_5.01128,700,310 - 128,700,576UniSTSRnor5.0
RGSC_v3.41121,168,690 - 121,168,956UniSTSRGSC3.4
Celera1112,495,968 - 112,496,234UniSTS
RH 3.4 Map11466.59UniSTS
Cytogenetic Map1q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 163 91 90 59 90 59 6 353 189 11 142 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000018463   ⟹   ENSRNOP00000018463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1129,698,070 - 129,703,826 (+)Ensembl
mRatBN7.2 Ensembl1120,267,693 - 120,293,607 (+)Ensembl
Rnor_6.0 Ensembl1127,604,197 - 127,625,577 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000136110   ⟹   ENSRNOP00000100897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1129,692,225 - 129,703,826 (+)Ensembl
RefSeq Acc Id: NM_001400228   ⟹   NP_001387157
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,876 - 129,703,831 (+)NCBI
mRatBN7.21120,267,653 - 120,293,608 (+)NCBI
RefSeq Acc Id: XM_039094293   ⟹   XP_038950221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,847 - 129,705,399 (+)NCBI
mRatBN7.21120,267,590 - 120,295,013 (+)NCBI
RefSeq Acc Id: XM_039094297   ⟹   XP_038950225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,849 - 129,703,831 (+)NCBI
mRatBN7.21120,267,590 - 120,293,608 (+)NCBI
RefSeq Acc Id: XM_039094299   ⟹   XP_038950227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,852 - 129,703,831 (+)NCBI
mRatBN7.21120,267,589 - 120,293,608 (+)NCBI
RefSeq Acc Id: XM_039094319   ⟹   XP_038950247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,698,657 - 129,703,831 (+)NCBI
mRatBN7.21120,288,434 - 120,293,608 (+)NCBI
RefSeq Acc Id: XM_039094329   ⟹   XP_038950257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,815 - 129,703,831 (+)NCBI
mRatBN7.21120,267,587 - 120,293,608 (+)NCBI
RefSeq Acc Id: XM_063262516   ⟹   XP_063118586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,852 - 129,703,831 (+)NCBI
RefSeq Acc Id: XM_063262526   ⟹   XP_063118596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,848 - 129,703,831 (+)NCBI
Ensembl Acc Id: ENSRNOP00000018463   ⟸   ENSRNOT00000018463
RefSeq Acc Id: XP_038950257   ⟸   XM_039094329
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950227   ⟸   XM_039094299
- Peptide Label: isoform X1
- UniProtKB: D3ZVQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950221   ⟸   XM_039094293
- Peptide Label: isoform X1
- UniProtKB: D3ZVQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950225   ⟸   XM_039094297
- Peptide Label: isoform X1
- UniProtKB: D3ZVQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950247   ⟸   XM_039094319
- Peptide Label: isoform X2
- UniProtKB: A6JBR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387157   ⟸   NM_001400228
- UniProtKB: D3ZVQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118596   ⟸   XM_063262526
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118586   ⟸   XM_063262516
- Peptide Label: isoform X1
- UniProtKB: D3ZVQ9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100897   ⟸   ENSRNOT00000136110
Protein Domains
Protein Lines C-terminal   Protein Lines N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVQ9-F1-model_v2 AlphaFold D3ZVQ9 1-742 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308792 AgrOrtholog
BioCyc Gene G2FUF-59004 BioCyc
Ensembl Genes ENSRNOG00000042776 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018463 ENTREZGENE
  ENSRNOT00000018463.9 UniProtKB/TrEMBL
  ENSRNOT00000136110 ENTREZGENE
  ENSRNOT00000136110.1 UniProtKB/TrEMBL
InterPro Lines_C UniProtKB/TrEMBL
  LINES_N UniProtKB/TrEMBL
  Protein_Lines UniProtKB/TrEMBL
NCBI Gene 308704 ENTREZGENE
PANTHER PROTEIN LINES HOMOLOG 1 UniProtKB/TrEMBL
  PTHR16057 UniProtKB/TrEMBL
Pfam LINES_C UniProtKB/TrEMBL
  LINES_N UniProtKB/TrEMBL
PhenoGen Lins1 PhenoGen
RatGTEx ENSRNOG00000042776 RatGTEx
UniProt A0ABK0LJ11_RAT UniProtKB/TrEMBL
  A6JBR1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVQ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-09-02 Lins1  lines homolog 1  Lins  lines homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-08-03 Lins  lines homolog (Drosophila)  Lins1  lines homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-09-10 Lins  lines homolog (Drosophila)  Lins1  lines homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-06 Lins1  lines homolog 1 (Drosophila)  Lins2  lines homolog 2 (Drosophila)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Lins2  lines homolog 2 (Drosophila)   Lins2_predicted  lines homolog 2 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Lins2_predicted  lines homolog 2 (Drosophila) (predicted)  RGD1308792_predicted  similar to WINS1 protein with Drosophila Lines (Lin) homologous domain (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1308792_predicted  similar to WINS1 protein with Drosophila Lines (Lin) homologous domain (predicted)  LOC308704_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC308704_predicted  similar to WINS1 protein with Drosophila Lines (Lin) homologous domain (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL