Lins1 (lines homolog 1) - Rat Genome Database

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Gene: Lins1 (lines homolog 1) Mus musculus
Analyze
Symbol: Lins1
Name: lines homolog 1
RGD ID: 1615057
MGI Page MGI
Description: Predicted to be involved in cognition. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 27. Orthologous to human LINS1 (lines homolog 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2700083B01Rik; AW547219; Lines homolog; lines homolog (Drosophila) 1; Lines homolog 2; Lins; Lins2; protein with Drosophila Lines (Lin) homologous domain; protein with Drosophila Lines homologous domain; Wi; Wins2; Wins2 protein with Drosophila Lin homologous domain; wnt-signaling molecule Lines homolog 1; wnt-signaling molecule Lines homolog 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18408  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39766,339,565 - 66,367,004 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl766,339,637 - 66,367,004 (+)EnsemblGRCm39 Ensembl
GRCm38766,689,817 - 66,717,256 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl766,689,889 - 66,717,256 (+)EnsemblGRCm38mm10GRCm38
MGSCv37773,852,990 - 73,859,542 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36766,587,054 - 66,593,606 (+)NCBIMGSCv36mm8
Celera764,161,477 - 64,168,020 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map736.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cognition  (ISO)

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9598303   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12119551   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:38355793  


Genomics

Comparative Map Data
Lins1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39766,339,565 - 66,367,004 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl766,339,637 - 66,367,004 (+)EnsemblGRCm39 Ensembl
GRCm38766,689,817 - 66,717,256 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl766,689,889 - 66,717,256 (+)EnsemblGRCm38mm10GRCm38
MGSCv37773,852,990 - 73,859,542 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36766,587,054 - 66,593,606 (+)NCBIMGSCv36mm8
Celera764,161,477 - 64,168,020 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map736.08NCBI
LINS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3815100,566,924 - 100,602,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl15100,559,369 - 100,603,230 (-)EnsemblGRCh38hg38GRCh38
GRCh3715101,107,129 - 101,142,389 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361598,926,958 - 98,959,927 (-)NCBINCBI36Build 36hg18NCBI36
Celera1577,522,681 - 77,555,652 (-)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1577,231,194 - 77,263,814 (-)NCBIHuRef
CHM1_115100,949,360 - 100,983,431 (-)NCBICHM1_1
T2T-CHM13v2.01598,321,577 - 98,357,861 (-)NCBIT2T-CHM13v2.0
Lins1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81129,677,815 - 129,705,399 (+)NCBIGRCr8
mRatBN7.21120,267,586 - 120,295,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,267,693 - 120,293,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1128,265,667 - 128,291,649 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,437,099 - 135,463,081 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01128,241,271 - 128,267,234 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01127,599,647 - 127,625,583 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,604,197 - 127,625,577 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01128,674,717 - 128,701,711 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41121,162,852 - 121,169,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11121,241,784 - 121,247,350 (+)NCBI
Celera1112,470,441 - 112,496,377 (+)NCBICelera
Cytogenetic Map1q22NCBI
Lins1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541627,586,257 - 27,595,117 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541627,585,172 - 27,609,780 (-)NCBIChiLan1.0ChiLan1.0
LINS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21690,160,094 - 90,194,720 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11593,859,699 - 93,895,045 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01579,293,426 - 79,328,691 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11598,583,906 - 98,616,407 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1598,583,906 - 98,616,407 (-)Ensemblpanpan1.1panPan2
LINS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1340,415,599 - 40,437,075 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl340,415,163 - 40,436,966 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha343,107,942 - 43,128,495 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0340,816,058 - 40,837,558 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl340,816,412 - 40,837,546 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1340,349,850 - 40,371,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0340,580,455 - 40,601,936 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0340,787,712 - 40,809,208 (+)NCBIUU_Cfam_GSD_1.0
LINS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1139,168,785 - 139,191,163 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11139,168,859 - 139,191,238 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21155,373,215 - 155,395,580 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LINS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12919,036,427 - 19,065,361 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2919,036,305 - 19,044,244 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605927,478,584 - 27,507,513 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lins1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247684,134,796 - 4,145,137 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247684,122,981 - 4,143,202 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lins1
1342 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4597
Count of miRNA genes:831
Interacting mature miRNAs:1107
Transcripts:ENSMUST00000065323, ENSMUST00000077967, ENSMUST00000121777, ENSMUST00000128486, ENSMUST00000130161, ENSMUST00000132181, ENSMUST00000132351, ENSMUST00000133199, ENSMUST00000133771, ENSMUST00000150071, ENSMUST00000153007, ENSMUST00000153773, ENSMUST00000177726
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
12738423Lfibq6_mliver fibrosis QTL 6 (mouse)74769437866704862Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
13432171Rosd1_mrotarod saline difference 1 (mouse)75919437869004862Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
13506761Tbthq1_mtrabecular bone thickness QTL 1 (mouse)76234974867749748Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
13506750Tbthq2_mtrabecular bone thickness QTL 2 (mouse)76565974877549748Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse

Markers in Region
AW547219  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38766,714,453 - 66,714,569UniSTSGRCm38
MGSCv37773,859,339 - 73,859,455UniSTSGRCm37
Celera764,167,817 - 64,167,933UniSTS
Cytogenetic Map7CUniSTS
Whitehead/MRC_RH7860.56UniSTS
UniSTS:235682  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38766,708,265 - 66,708,683UniSTSGRCm38
MGSCv37773,853,151 - 73,853,569UniSTSGRCm37
Celera764,161,638 - 64,162,056UniSTS
Cytogenetic Map7CUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_152815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_034030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB083158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC120791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000065323   ⟹   ENSMUSP00000071009
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,357,778 - 66,364,435 (+)Ensembl
GRCm38.p6 Ensembl766,708,030 - 66,714,687 (+)Ensembl
RefSeq Acc Id: ENSMUST00000077967   ⟹   ENSMUSP00000077117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,339,706 - 66,364,492 (+)Ensembl
GRCm38.p6 Ensembl766,689,958 - 66,714,744 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121777   ⟹   ENSMUSP00000112404
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,339,642 - 66,364,495 (+)Ensembl
GRCm38.p6 Ensembl766,689,894 - 66,714,747 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,339,697 - 66,359,650 (+)Ensembl
GRCm38.p6 Ensembl766,689,949 - 66,709,902 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130161   ⟹   ENSMUSP00000118620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,339,706 - 66,367,004 (+)Ensembl
GRCm38.p6 Ensembl766,689,958 - 66,717,256 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,359,894 - 66,367,002 (+)Ensembl
GRCm38.p6 Ensembl766,710,146 - 66,717,254 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132351   ⟹   ENSMUSP00000115180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,357,926 - 66,360,123 (+)Ensembl
GRCm38.p6 Ensembl766,708,178 - 66,710,375 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133199   ⟹   ENSMUSP00000115124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,359,157 - 66,363,598 (+)Ensembl
GRCm38.p6 Ensembl766,709,409 - 66,713,850 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133771   ⟹   ENSMUSP00000117270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,339,719 - 66,364,495 (+)Ensembl
GRCm38.p6 Ensembl766,689,971 - 66,714,747 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150071   ⟹   ENSMUSP00000115330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,339,648 - 66,357,969 (+)Ensembl
GRCm38.p6 Ensembl766,689,900 - 66,708,221 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153007   ⟹   ENSMUSP00000121054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,339,637 - 66,358,105 (+)Ensembl
GRCm38.p6 Ensembl766,689,889 - 66,708,357 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153773   ⟹   ENSMUSP00000119187
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,358,071 - 66,360,312 (+)Ensembl
GRCm38.p6 Ensembl766,708,323 - 66,710,564 (+)Ensembl
RefSeq Acc Id: NM_001191001   ⟹   NP_001177930
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,339,637 - 66,367,004 (+)NCBI
GRCm38766,689,889 - 66,717,256 (+)NCBI
Celera764,140,192 - 64,170,620 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_152815   ⟹   NP_690028
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,339,637 - 66,367,004 (+)NCBI
GRCm38766,689,889 - 66,717,256 (+)NCBI
MGSCv37773,852,990 - 73,859,542 (+)RGD
Celera764,140,192 - 64,170,620 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_034030
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,339,637 - 66,367,004 (+)NCBI
GRCm38766,689,889 - 66,717,256 (+)NCBI
Celera764,140,192 - 64,170,620 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006541217   ⟹   XP_006541280
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,339,681 - 66,365,319 (+)NCBI
GRCm38766,689,933 - 66,715,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541218   ⟹   XP_006541281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,339,615 - 66,365,319 (+)NCBI
GRCm38766,689,939 - 66,715,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541219   ⟹   XP_006541282
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,339,565 - 66,365,365 (+)NCBI
GRCm38766,689,817 - 66,715,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006541220   ⟹   XP_006541283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,345,923 - 66,365,319 (+)NCBI
GRCm38766,689,933 - 66,715,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250905   ⟹   XP_011249207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,345,924 - 66,365,300 (+)NCBI
GRCm38766,689,933 - 66,715,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017312329   ⟹   XP_017167818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,358,081 - 66,365,319 (+)NCBI
GRCm38766,708,333 - 66,715,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243012   ⟹   XP_030098872
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,339,683 - 66,365,319 (+)NCBI
GRCm38766,689,939 - 66,715,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243014   ⟹   XP_030098874
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,339,679 - 66,365,300 (+)NCBI
GRCm38766,689,931 - 66,715,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153457   ⟹   XP_036009350
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,345,966 - 66,365,319 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153458   ⟹   XP_036009351
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,345,966 - 66,365,300 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153459   ⟹   XP_036009352
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,345,969 - 66,365,319 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153460   ⟹   XP_036009353
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,339,677 - 66,365,300 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153461   ⟹   XP_036009354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,358,119 - 66,365,300 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001177930 (Get FASTA)   NCBI Sequence Viewer  
  NP_690028 (Get FASTA)   NCBI Sequence Viewer  
  XP_006541280 (Get FASTA)   NCBI Sequence Viewer  
  XP_006541281 (Get FASTA)   NCBI Sequence Viewer  
  XP_006541282 (Get FASTA)   NCBI Sequence Viewer  
  XP_006541283 (Get FASTA)   NCBI Sequence Viewer  
  XP_011249207 (Get FASTA)   NCBI Sequence Viewer  
  XP_017167818 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098872 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098874 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009350 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009351 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009352 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009353 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009354 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH59228 (Get FASTA)   NCBI Sequence Viewer  
  AAI38550 (Get FASTA)   NCBI Sequence Viewer  
  BAB93865 (Get FASTA)   NCBI Sequence Viewer  
  BAC31792 (Get FASTA)   NCBI Sequence Viewer  
  BAE33568 (Get FASTA)   NCBI Sequence Viewer  
  BAE42291 (Get FASTA)   NCBI Sequence Viewer  
  EDL07207 (Get FASTA)   NCBI Sequence Viewer  
  EDL07208 (Get FASTA)   NCBI Sequence Viewer  
  EDL07209 (Get FASTA)   NCBI Sequence Viewer  
  EDL07210 (Get FASTA)   NCBI Sequence Viewer  
  EDL07211 (Get FASTA)   NCBI Sequence Viewer  
  EDL07212 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000071009.8
  ENSMUSP00000077117
  ENSMUSP00000077117.7
  ENSMUSP00000112404
  ENSMUSP00000112404.3
  ENSMUSP00000115124.3
  ENSMUSP00000115180.2
  ENSMUSP00000115330.2
  ENSMUSP00000117270.3
  ENSMUSP00000118620.3
  ENSMUSP00000119187.2
  ENSMUSP00000121054.2
GenBank Protein Q3U1D0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_690028   ⟸   NM_152815
- Peptide Label: isoform 1
- UniProtKB: Q6PCP6 (UniProtKB/Swiss-Prot),   Q3TBL8 (UniProtKB/Swiss-Prot),   Q8K4P9 (UniProtKB/Swiss-Prot),   Q3U1D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001177930   ⟸   NM_001191001
- Peptide Label: isoform 2
- UniProtKB: Q3U1D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006541283   ⟸   XM_006541220
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006541282   ⟸   XM_006541219
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006541280   ⟸   XM_006541217
- Peptide Label: isoform X1
- UniProtKB: Q3U1D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006541281   ⟸   XM_006541218
- Peptide Label: isoform X1
- UniProtKB: Q3U1D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011249207   ⟸   XM_011250905
- Peptide Label: isoform X6
- UniProtKB: Q3U1D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017167818   ⟸   XM_017312329
- Peptide Label: isoform X6
- UniProtKB: Q3U1D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030098874   ⟸   XM_030243014
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030098872   ⟸   XM_030243012
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000118620   ⟸   ENSMUST00000130161
RefSeq Acc Id: ENSMUSP00000115330   ⟸   ENSMUST00000150071
RefSeq Acc Id: ENSMUSP00000071009   ⟸   ENSMUST00000065323
RefSeq Acc Id: ENSMUSP00000115124   ⟸   ENSMUST00000133199
RefSeq Acc Id: ENSMUSP00000115180   ⟸   ENSMUST00000132351
RefSeq Acc Id: ENSMUSP00000121054   ⟸   ENSMUST00000153007
RefSeq Acc Id: ENSMUSP00000117270   ⟸   ENSMUST00000133771
RefSeq Acc Id: ENSMUSP00000119187   ⟸   ENSMUST00000153773
RefSeq Acc Id: ENSMUSP00000077117   ⟸   ENSMUST00000077967
RefSeq Acc Id: ENSMUSP00000112404   ⟸   ENSMUST00000121777
RefSeq Acc Id: XP_036009353   ⟸   XM_036153460
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036009350   ⟸   XM_036153457
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036009351   ⟸   XM_036153458
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036009352   ⟸   XM_036153459
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036009354   ⟸   XM_036153461
- Peptide Label: isoform X6
Protein Domains
Protein Lines N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3U1D0-F1-model_v2 AlphaFold Q3U1D0 1-764 view protein structure

Promoters
RGD ID:8664387
Promoter ID:EPDNEW_M10224
Type:initiation region
Name:Lins1_1
Description:Mus musculus lines homolog 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10225  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38766,689,963 - 66,690,023EPDNEW
RGD ID:8664389
Promoter ID:EPDNEW_M10225
Type:multiple initiation site
Name:Lins1_2
Description:Mus musculus lines homolog 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10224  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38766,696,453 - 66,696,513EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919885 AgrOrtholog
Ensembl Genes ENSMUSG00000053091 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000065323.14 UniProtKB/TrEMBL
  ENSMUST00000077967 ENTREZGENE
  ENSMUST00000077967.13 UniProtKB/Swiss-Prot
  ENSMUST00000121777 ENTREZGENE
  ENSMUST00000121777.9 UniProtKB/Swiss-Prot
  ENSMUST00000130161 ENTREZGENE
  ENSMUST00000130161.9 UniProtKB/TrEMBL
  ENSMUST00000132351.8 UniProtKB/TrEMBL
  ENSMUST00000133199.3 UniProtKB/TrEMBL
  ENSMUST00000133771.9 UniProtKB/TrEMBL
  ENSMUST00000150071.8 UniProtKB/TrEMBL
  ENSMUST00000153007.2 UniProtKB/TrEMBL
  ENSMUST00000153773.2 UniProtKB/TrEMBL
InterPro Lines_C UniProtKB/Swiss-Prot
  LINES_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_Lines UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72635 UniProtKB/Swiss-Prot
MGD MGI:1919885 ENTREZGENE
NCBI Gene 72635 ENTREZGENE
PANTHER PROTEIN LINES HOMOLOG 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16057 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LINES_C UniProtKB/Swiss-Prot
  LINES_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lins1 PhenoGen
UniProt D3YTN6_MOUSE UniProtKB/TrEMBL
  D3YU94_MOUSE UniProtKB/TrEMBL
  D6RFA2_MOUSE UniProtKB/TrEMBL
  D6RGQ4_MOUSE UniProtKB/TrEMBL
  F6QWY7_MOUSE UniProtKB/TrEMBL
  F6SLL8_MOUSE UniProtKB/TrEMBL
  LINES_MOUSE UniProtKB/Swiss-Prot
  Q3TBL8 ENTREZGENE
  Q3U1D0 ENTREZGENE
  Q6PCP6 ENTREZGENE
  Q8BRI6_MOUSE UniProtKB/TrEMBL
  Q8K4P9 ENTREZGENE
UniProt Secondary Q3TBL8 UniProtKB/Swiss-Prot
  Q6PCP6 UniProtKB/Swiss-Prot
  Q8K4P9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-02 Lins1  lines homolog 1    lines homolog (Drosophila) 1  Symbol and/or name change 5135510 APPROVED
2015-09-08 Lins1  lines homolog (Drosophila) 1  Lins  lines homolog (Drosophila)  Symbol and/or name change 5135510 APPROVED
2011-07-27 Lins  lines homolog (Drosophila)  Lins2  lines homolog 2 (Drosophila)  Symbol and/or name change 5135510 APPROVED