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Gene: Setdb1 (SET domain bifurcated histone lysine methyltransferase 1) Rattus norvegicus

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Symbol:

Setdb1

Name:

SET domain bifurcated histone lysine methyltransferase 1

RGD ID:

1308370

Description:

Predicted to enable several functions, including histone H3 reader activity; histone H3K9 methyltransferase activity; and promoter-specific chromatin binding activity. Involved in response to ethanol and response to vitamin. Predicted to be located in nucleoplasm. Predicted to be active in chromatin; cytoplasm; and nucleus. Human ortholog(s) of this gene implicated in autistic disorder and lung cancer. Orthologous to human SETDB1 (SET domain bifurcated histone lysine methyltransferase 1); PARTICIPATES IN histone modification pathway; homocysteine metabolic pathway; methionine cycle/metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

histone-lysine N-methyltransferase SETDB1; histone-lysine N-methyltransferase SETDB1-like; LOC100911180; LOC310668; LOC689883; SET domain, bifurcated 1; SET domain, bifurcated 1 (predicted); Setdb1_predicted; similar to Histone-lysine N-methyltransferase, H3 lysine-9 specific 4 (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Related Pseudogenes:

Setdb1-ps1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	185,587,722 - 185,619,084 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	185,587,722 - 185,618,982 (-)	Ensembl				GRCr8
mRatBN7.2	2	182,898,738 - 182,930,283 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	182,898,738 - 182,930,506 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	190,563,824 - 190,594,782 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	188,359,310 - 188,390,238 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	183,196,321 - 183,227,279 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	2	185,191,984 - 185,222,935 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	2	185,418,941 - 185,449,888 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	2	185,076,477 - 185,107,436 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	2	185,171,458 - 185,202,416 (-)	NCBI		F344_StmMcwi
Rnor_6.0	2	196,495,867 - 196,527,412 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	196,495,867 - 196,527,127 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	215,994,295 - 216,025,842 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	190,232,228 - 190,264,309 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	175,432,236 - 175,463,195 (-)	NCBI		Celera
RGSC_v3.1	2	190,195,015 - 190,227,043 (-)	NCBI
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

high grade glioma (ISO)

Huntington's disease (ISO)

lung cancer (ISO)

malignant mesothelioma (ISO)

melanoma (ISO)

prostate cancer (ISO)

Prostatic Neoplasms (ISO)

Rett syndrome (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene diol epoxide I (ISO)

berberine (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

copper atom (EXP)

copper(0) (EXP)

coumarin (ISO)

crocidolite asbestos (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dimethyl sulfoxide (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

ferroheme b (ISO)

FR900359 (ISO)

gallic acid (ISO)

gentamycin (EXP)

glyphosate (EXP)

heme b (ISO)

melatonin (ISO)

methimazole (EXP)

paracetamol (EXP)

pentachlorophenol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (EXP,ISO)

sodium chromate (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

T-2 toxin (EXP)

tert-butyl hydroperoxide (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bone development (ISO)

chromatin organization (IEA)

DNA methylation-dependent constitutive heterochromatin formation (IEA,ISO)

DNA-templated transcription (IEA)

gene expression (ISO)

heterochromatin organization (IBA,ISO)

inner cell mass cell proliferation (ISO)

methylation (IEA)

negative regulation of DNA-templated transcription (IEA)

negative regulation of gene expression (IBA,ISO)

negative regulation of gene expression, epigenetic (IEA)

negative regulation of single stranded viral RNA replication via double stranded DNA intermediate (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

response to ethanol (IEP)

response to vitamin (IEP)

transposable element silencing by heterochromatin formation (ISO)

Cellular Component

chromatin (ISO)

chromosome (IEA)

cytoplasm (ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

ribonucleoprotein complex (ISO)

Molecular Function

chromatin binding (ISO)

DNA binding (IEA,ISO)

histone H3K14ac reader activity (ISO)

histone H3K9 dimethyltransferase activity (ISO)

histone H3K9 methyltransferase activity (IBA,IEA,ISO)

histone H3K9 monomethyltransferase activity (ISO)

histone H3K9 trimethyltransferase activity (ISO)

histone H3K9me2 methyltransferase activity (IEA)

histone H3K9me2/3 reader activity (ISO)

histone methyltransferase activity (IEA)

metal ion binding (IEA)

methyltransferase activity (IEA)

promoter-specific chromatin binding (IEA,ISO)

protein binding (ISO)

transferase activity (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

homocysteine metabolic pathway (ISO)

lysine degradation pathway (IEA)

methionine cycle/metabolic pathway (ISO)

Wnt signaling, non-canonical pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Gestational choline supplementation normalized fetal alcohol-induced alterations in histone modifications, DNA methylation, and proopiomelanocortin (POMC) gene expression in beta-endorphin-producing POMC neurons of the hypothalamus.	Bekdash RA, etal., Alcohol Clin Exp Res. 2013 Jul;37(7):1133-42. doi: 10.1111/acer.12082. Epub 2013 Feb 15.
2.	Histone lysine methylation dynamics: establishment, regulation, and biological impact.	Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
3.	Histone methylation at H3K9: evidence for a restrictive epigenome in schizophrenia.	Chase KA, etal., Schizophr Res. 2013 Sep;149(1-3):15-20. doi: 10.1016/j.schres.2013.06.021. Epub 2013 Jun 28.
4.	The expanding role of MBD genes in autism: identification of a MECP2 duplication and novel alterations in MBD5, MBD6, and SETDB1.	Cukier HN, etal., Autism Res. 2012 Dec;5(6):385-97. doi: 10.1002/aur.1251. Epub 2012 Oct 10.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
7.	Setdb1-mediated histone H3K9 hypermethylation in neurons worsens the neurological phenotype of Mecp2-deficient mice.	Jiang Y, etal., Neuropharmacology. 2011 Jun;60(7-8):1088-97. doi: 10.1016/j.neuropharm.2010.09.020. Epub 2010 Sep 30.
8.	High-frequency p16(INK) (4A) promoter methylation is associated with histone methyltransferase SETDB1 expression in sporadic cutaneous melanoma.	Kostaki M, etal., Exp Dermatol. 2014 May;23(5):332-8. doi: 10.1111/exd.12398.
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
11.	GOA pipeline	RGD automated data pipeline
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Comprehensive gene review and curation	RGD comprehensive gene curation
14.	Gene amplification of the histone methyltransferase SETDB1 contributes to human lung tumorigenesis.	Rodriguez-Paredes M, etal., Oncogene. 2014 May 22;33(21):2807-13. doi: 10.1038/onc.2013.239. Epub 2013 Jun 17.
15.	ESET/SETDB1 gene expression and histone H3 (K9) trimethylation in Huntington's disease.	Ryu H, etal., Proc Natl Acad Sci U S A. 2006 Dec 12;103(50):19176-81. Epub 2006 Dec 1.
16.	SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.	Schultz DC, etal., Genes Dev 2002 Apr 15;16(8):919-32.
17.	Role of histone lysine methyltransferases SUV39H1 and SETDB1 in gliomagenesis: modulation of cell proliferation, migration, and colony formation.	Spyropoulou A, etal., Neuromolecular Med. 2014 Mar;16(1):70-82. doi: 10.1007/s12017-013-8254-x. Epub 2013 Aug 13.
18.	Histone methyltransferase SETDB1 is required for prostate cancer cell proliferation, migration and invasion.	Sun Y, etal., Asian J Androl. 2014 Mar-Apr;16(2):319-24. doi: 10.4103/1008-682X.122812.

Additional References at PubMed

PMID:11791185	PMID:14536086	PMID:14993285	PMID:20164836	PMID:22079090	PMID:22495301	PMID:22876197	PMID:22939622	PMID:24623306	PMID:27029610	PMID:27732843	PMID:29728365

Genomics

Comparative Map Data

Setdb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	185,587,722 - 185,619,084 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	185,587,722 - 185,618,982 (-)	Ensembl				GRCr8
mRatBN7.2	2	182,898,738 - 182,930,283 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	182,898,738 - 182,930,506 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	190,563,824 - 190,594,782 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	188,359,310 - 188,390,238 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	183,196,321 - 183,227,279 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	2	185,191,984 - 185,222,935 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	2	185,418,941 - 185,449,888 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	2	185,076,477 - 185,107,436 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	2	185,171,458 - 185,202,416 (-)	NCBI		F344_StmMcwi
Rnor_6.0	2	196,495,867 - 196,527,412 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	196,495,867 - 196,527,127 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	215,994,295 - 216,025,842 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	190,232,228 - 190,264,309 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	175,432,236 - 175,463,195 (-)	NCBI		Celera
RGSC_v3.1	2	190,195,015 - 190,227,043 (-)	NCBI
Cytogenetic Map	2	q34	NCBI

SETDB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	150,926,263 - 150,964,737 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	150,926,263 - 150,964,744 (+)	Ensembl			hg38	GRCh38
GRCh37	1	150,898,739 - 150,937,213 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	149,165,512 - 149,203,837 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	147,711,960 - 147,750,284	NCBI
Celera	1	124,014,522 - 124,052,915 (+)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	122,275,918 - 122,314,348 (+)	NCBI		HuRef
CHM1_1	1	152,294,142 - 152,332,540 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	150,049,948 - 150,088,436 (+)	NCBI		T2T-CHM13v2.0

Setdb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	95,230,836 - 95,264,513 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	95,230,836 - 95,264,513 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	95,323,525 - 95,357,202 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	95,323,525 - 95,357,202 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	95,127,447 - 95,161,124 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	95,408,929 - 95,442,577 (-)	NCBI		MGSCv36	mm8
Celera	3	96,754,826 - 96,788,575 (-)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	40.74	NCBI

Setdb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955588	290,168 - 338,426 (+)	Ensembl
ChiLan1.0	NW_004955588	290,497 - 338,438 (+)	NCBI	ChiLan1.0	ChiLan1.0

SETDB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	98,868,713 - 98,907,047 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	98,622,938 - 98,661,286 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	126,275,719 - 126,314,043 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	129,925,009 - 129,962,442 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	129,925,009 - 129,962,442 (+)	Ensembl			panPan2	panpan1.1

SETDB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	60,035,819 - 60,069,721 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	60,037,379 - 60,069,551 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	59,481,019 - 59,513,690 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	61,052,838 - 61,085,686 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	61,052,909 - 61,085,961 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	59,881,637 - 59,914,607 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	59,966,210 - 59,999,560 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	60,694,148 - 60,726,997 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Setdb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	22,115,903 - 22,162,583 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	1,146,277 - 1,192,842 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	1,146,286 - 1,192,842 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SETDB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	98,260,375 - 98,293,097 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	98,259,801 - 98,293,238 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	107,514,914 - 107,547,700 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SETDB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666038	12,316,851 - 12,357,421 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Setdb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	18,855,332 - 18,894,226 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624772	18,855,405 - 18,894,285 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Setdb1
148 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	37
Count of miRNA genes:	35
Interacting mature miRNAs:	35
Transcripts:	ENSRNOT00000028709
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	163997722	225110681	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	169358774	214358774	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170656145	239614549	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	199723085	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	145807215	190807215	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	199723085	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	205135267	Rat
10043139	Iddm55	Insulin dependent diabetes mellitus QTL 55	3.1	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	150313808	195313808	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	199723085	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	199723085	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170652929	215652929	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	220931218	Rat
4889834	Pur24	Proteinuria QTL 24	5.8	0.014	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	171994826	205135428	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143565208	188565208	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	199723085	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	184856304	229856304	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	184856304	229856304	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	159440760	195313808	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	144882354	205135428	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
1357991	Ael2	Aortic elastin QTL 2	4.2	0.000071	aorta elastin amount (VT:0003905)	aortic elastin	2	169227906	214227906	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	184856304	229856304	Rat
1578671	Bmd10	Bone mineral density QTL 10	5.4		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	2	175931416	220931416	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	182024327	227024327	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	159440760	228950743	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	184482291	229482291	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150096616	195096616	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	147287892	192287892	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150096616	195096616	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	182635347	227635347	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	175008837	220008837	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	184856304	229856304	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	165453811	210453811	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	163253030	208253030	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166372086	229820014	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat

Markers in Region

AW535103

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	182,899,017 - 182,899,215 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	196,496,147 - 196,496,344	NCBI	Rnor6.0
Rnor_5.0	2	215,994,575 - 215,994,772	UniSTS	Rnor5.0
RGSC_v3.4	2	190,232,508 - 190,232,705	UniSTS	RGSC3.4
Celera	2	175,432,516 - 175,432,713	UniSTS
RH 3.4 Map	2	1195.21	UniSTS
Cytogenetic Map	2	q34	UniSTS

UniSTS:234764

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	182,898,559 - 182,898,730 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	196,495,689 - 196,495,859	NCBI	Rnor6.0
Rnor_5.0	2	215,994,117 - 215,994,287	UniSTS	Rnor5.0
RGSC_v3.4	2	190,232,050 - 190,232,220	UniSTS	RGSC3.4
Celera	2	175,432,058 - 175,432,228	UniSTS
Cytogenetic Map	2	q34	UniSTS

PMC355869P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	182,903,581 - 182,903,830 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	196,500,711 - 196,500,959	NCBI	Rnor6.0
Rnor_5.0	2	215,999,139 - 215,999,387	UniSTS	Rnor5.0
RGSC_v3.4	2	190,237,072 - 190,237,320	UniSTS	RGSC3.4
Celera	2	175,437,080 - 175,437,328	UniSTS
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DN932534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DN937937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028709 ⟹ ENSRNOP00000028709

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	185,587,722 - 185,618,510 (-)	Ensembl
mRatBN7.2 Ensembl	2	182,898,738 - 182,929,527 (-)	Ensembl
Rnor_6.0 Ensembl	2	196,495,867 - 196,527,127 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077325 ⟹ ENSRNOP00000073356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	185,587,722 - 185,618,982 (-)	Ensembl
mRatBN7.2 Ensembl	2	182,898,738 - 182,930,506 (-)	Ensembl
Rnor_6.0 Ensembl	2	196,496,189 - 196,526,886 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111803 ⟹ ENSRNOP00000097818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	185,587,722 - 185,618,982 (-)	Ensembl
mRatBN7.2 Ensembl	2	182,898,738 - 182,930,080 (-)	Ensembl

RefSeq Acc Id:

NM_001271175 ⟹ NP_001258104

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,587,722 - 185,618,982 (-)	NCBI
mRatBN7.2	2	182,898,738 - 182,929,999 (-)	NCBI
Dahl_SR_JrHsd	2	185,191,984 - 185,222,935 (-)	NCBI
Lyon_Normotensive	2	185,418,941 - 185,449,888 (-)	NCBI
Lyon_Hypertensive	2	185,076,477 - 185,107,436 (-)	NCBI
F344_StmMcwi	2	185,171,458 - 185,202,416 (-)	NCBI
Rnor_6.0	2	196,495,867 - 196,527,127 (-)	NCBI
Rnor_5.0	2	215,994,295 - 216,025,842 (-)	NCBI
Celera	2	175,432,236 - 175,463,195 (-)	NCBI

Sequence:

show sequence

GTTTTGGCGAGGCGGAGCCCTGGAGTAAAACCTGGGGTCGGTGTTGTGAGACCCGGCCCTTGCG
GTTGGGAGCCGGAGCTGTGGGGCGGGCTGACTGAGGGCGAAAGCATGTCCTCCCTCCCTGGGTG
CATGAGTTTGGCTGCAGCGCCAGCTGCGGCGGACTCTGCAGAGATTGCTGAGCTGCAGCAGGCA
GTGGTTGAAGAGCTGGGTATCTCTATGGAGGAACTTCGTCAGTTCATCGATGAAGAACTGGAAA
AGATGGACTGTATACAGCAGCGCAAGAAGCAGCTGGCAGAGCTGGAGACGTGGGTGCTGCAGAA
GGAGTCTGAGGTGGCTTATGTTGATCGGCTGTTTGATGATGCATCTAGGGAAGTGACTAATTGT
GAGTCTTTGGTGAAGGATTTCTACTCTAAGCTGGGATTACAGTATCATGACAGTAGCTCTGACG
ATGAAGCTTCCCAGCCTACAGAGATAATCGAGATTCCTGATGAAGATGATGATGTCCTCAGTAT
TGATTCAGGTGATGCTGGGAGCAGAACGCCAAAAGATCAGAAGCTTCGTGAAGCTATGGCTGCC
TTAAGAAAATCAGCTCAAGATGTCCAGAAGTTCATGGATGCTGTGAATAAGAAAAGCAGTTCTC
AAGATCTACATAAAGGAACCTTGGGTCAGGTGTCTGGAGAACTGAGCAAAGATGGGGACCTGAT
AGTCAGCATGCGGATTCTGGGCAAGAAGAGGACTAAGACGTGGCACAAAGGCACCCTCATTGCC
ATCCAGACTGTCGGGCTAGGAAAGAAATACAAAGTGAAATTTGACAACAAAGGAAAGAGTCTGC
TGTCTGGGAACCATATTGCCTATGATTACCACCCTCCTGCTGACAAGCTGTTTGTGGGCAGTCG
AGTGGTGGCCAAATACAAAGATGGAAATCAGGTCTGGCTTTATGCTGGCATTGTAGCTGAGACC
CCTAACGTCAAGAACAAGCTCAGATTTTTAATTTTTTTTGATGATGGCTATGCTTCCTATGTCA
CTCAGTCCGAGCTGTATCCCATTTGCCGACCATTGAAAAAGACTTGGGAGGACATAGAAGACAG
CTCCTGCCGAGACTTCATAGAAGAATATATCACTGCCTATCCAAACCGCCCAATGGTACTTCTC
AAGAGTGGCCAGCTTATTAAGACTGAGTGGGAAGGCACATGGTGGAAGTCTCGAGTTGAAGAGG
TTGATGGCAGCCTAGTCAGGATCCTCTTTCTGGATGACAAAAGATGTGAGTGGATCTATCGAGG
CTCTACACGCCTGGAACCTATGTTCAGTATGAAGACATCCTCAGCCTCTGCAATGGAGAAGAAG
CAAGGGGGGCAACTCAGAACCCGTCCTAATATGGGTGCTGTGAGGAGCAAAGGTCCTGTTGTTC
AGTACACTCAGGATCTAACGAGTACTGGAATCCAGTTTAAGCCCATGGAGCCCCTGCAGCCTAT
AGTCCCACCTGCCCCGCTTCCCATGCTTCCTCTTTCCCCCCAGGCAGGCGACAGTGAAAGCTTA
GAAAGCCAGCTTGCTCAATCACGGAAGCAAGTAGCCAAAAAGAGCACATCATTCCGACCAGGAT
CTGTGAGTTCTGGCCATTCCTCCCCTACTTCGCCCACACTCAGTGAAAATGTACCCCCTGGGAA
AATTGGAATGAACCAGACATACAGATCACCTTCAGCCTCTGTAACATCTACCCCAGCACCTGCA
GCCCCTTCTGGGCCTCCAGCCCCTCCAGGGCCTCTTGCTCCTCCTGGACCACCGGCCCCTCCAG
CTTTCCACGGCATGTTAGAGCGGGCACCAGCTGAGCCCTCCTATCGTGCCCCTATGGAGAAGCT
TTTCTATTTACCTCATGTCTGCAGTTACACTTGTTTGTCCCGGATTAGACCCATGAGGAATGAA
CAATATCGGGGCAAAAACCCTCTACTGGTCCCACTATTGTATGACTTCCGGAGGATGACAGCAC
GTCGCAGAGTTAACCGCAAGATGGGCTTCCATGTAATCTATAAGACACCCTGTGGTCTCTGCCT
TCGGACGATGCAGGAAATAGAGCGCTACCTTTTTGAGACTGGCTGTGACTTCCTGTACCTGGAG
ATGTTCTGTTTGGATCCATATGTCCTTGTTGACAGAAAGTTCCAGCCCTTTAAACCTTTTTACT
ATATTTTGGACATCACCTATGGCAAAGAAGATGTTCCCCTGTCCTGTGTTAATGAGATTGACAC
AACTCCCCCACCCCAGGTGGCCTACAGCAAGGAACGCATTCCTGGCAAGGGTGTTTTCATTAAC
ACAGGCCCTGAATTTCTGGTTGGCTGTGACTGCAAGGATGGGTGTCGGGATAAATCCAAGTGTG
CCTGCCATCAGCTCACTGTCCAGGCCACAGCCTGTACCCCAGGGGGTCAGATCAACCCTAGCTC
CGGCTACCAGCACAAAAGACTAGAAGAGTGTCTGCCCACAGGGGTTTATGAGTGTAACAAGCGC
TGCAAATGTGACCCAAACATGTGCACAAATCGGTTGGTGCAGCATGGACTGCAGGTTCGACTAC
AGCTGTTTAAGACACAGAACAAGGGCTGGGGCATCCGCTGCTTGGATGACATTGCTAAAGGCTC
TTTTGTCTGCATTTATGCAGGCAAAATCCTGACAGATGACTTTGCAGACAAAGAAGGCCTCGAG
ATGGGTGATGAGTACTTTGCAAATCTGGACCACATTGAAAGTGTGGAGAACTTCAAGGAAGGAT
ATGAGAGTGACGTCCCCAGCTCCTCTGACAGCAGTGGGGTGGATATGAAGGACCAGGAGGATGG
CAACAGTGGCTCAGAGGACCCTGAGGAGTCCAACGACGACAGCTCCGATGACAACTTCTGTAAG
GACGAGGACTTCAGCACCAGTTCAGTGTGGCGTAGCTATGCAACCCGGAGGCAGACTCGGGGTC
AGAAGGAGAGTGAACTGTCTGAGGTGACTTCAAAGGACTCCCGCGCCCCAGACCGTGGGCCTCC
CCACGTCCCTATCACTCCCTCAGGATCTGTAGGGGGTTGCAATCCACCTTCCTCCGAAGAGACA
CCCAAGAACAAGGTGGCCTCATGGTTGAGCTGCAATAGTGTCAGTGAAGGTGGATTTGCTGACT
CTGACAGCCGTTCCTCCTTTAAGACTAGTGAAGGTGGAGATGGCCGTGCTGGGGGAGGCCGGGG
AGAGGCTGAAAGAGCCTCTACCTCAGGATTGAGCTTCAAGGATGAAGGAGACAGTAAGCAATCT
AAAAAAGAGGACCCTGAGGACCGAAACAAGATGTCAGTAGTTACTGAAGGCTCTCAGAATCATG
GACACAATCCTCCCATGAAGTCTGAAGGGCTTCGCCGACCAGCTAGTAAAATTTCTATGCTCCA
GAGCCAGCGAGTTGTGACTTCTACTCAGTCAAACCCTGATGATATCCTAACACTGTCCAGCAGC
ACAGAAAGTGAGGGGGAAAGTGGAACCAGCCGAAAGCCCACTACTGGTCAGACTTCAGCCACAG
CAGTTGACAGTGATGACATCCAGACCATCTCTTCTGGCTCTGATGGCGATGACTTTGAGGACAA
GAAGAACTTGTCGGGACCAACAAAGCGTCAGGTGGCAGTAAAATCAACCCGAGGCTTTGCTCTT
AAATCAACCCATGGTATTGCCATTAAATCAACCAACATGGCTTCCGTGGACAAGGGGGAGAGTG
CACCAGTTCGTAAGAACACACGCCAGTTCTATGATGGTGAAGAGTCTTGCTACATCATTGATGC
CAAACTTGAAGGCAACCTAGGCCGCTACCTCAATCACAGTTGCAGCCCCAACCTGTTTGTCCAG
AACGTTTTTGTGGATACCCATGATCTTCGCTTCCCTTGGGTGGCCTTTTTTGCCAGCAAGAGAA
TCCGGGCTGGAACAGAACTCACTTGGGATTACAACTATGAAGTGGGCAGTGTGGAAGGCAAGGA
ACTGCTGTGCTGCTGTGGAGCCATTGAATGCAGAGGGCGGCTTCTCTAGAGGAAGACTCTTCCT
CACTCTGAGGATCCCTTCCCCAGGAACTGGGTCTTTCTGACTCCACGTCTCTGATCTGGCTTCT
CCCCAGCTCCTAGTAGATAAAAGTGGGGGTCCTAGATCAGGACGTTGCCAGCGTGGTGCTAGCA
GGCACTAGGGTGGGATGACCACCCTAGCATCAGCCTGAGGTCCTTCTCATCCCGTATGTGTTCA
TGATTCACATGCGCCGTGTATCTGGTTTGTATGGTTTCTTGAAAGTCTTCTAACAAGATGATAA
AATAGAGCTTGTGGTTTGTCTTCTCTCCTCAGCCCCATCTTGACCTTCCAGGGAGATGTCATTT
CCCAATGGCAACTATCATTAGTTTACCCCTTGATTTTATTTGCCTTGTGTAATTTTTAACAGCA
ACAAAAGTTCCATGACCAGGAGGGAAGCCTAAGAAAAATAACCCTTCTCAAGTCTTAATAGTCT
GACACAGTCATGTTTTATTTAACCTTTAATATACTTTAATTAAAAAAAATTAACAGTA

hide sequence

RefSeq Acc Id:

XM_006232913 ⟹ XP_006232975

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,587,722 - 185,619,084 (-)	NCBI
mRatBN7.2	2	182,898,738 - 182,930,283 (-)	NCBI
Rnor_6.0	2	196,495,876 - 196,527,412 (-)	NCBI
Rnor_5.0	2	215,994,295 - 216,025,842 (-)	NCBI

Sequence:

show sequence

CTAGTAGGAGAGGAGCTTCTGTCAATTATTCCCAGAAAAAATCTACAAAAAACCTGCTTTGCCC
ATTTATCAAGAAATGCTCTACTTCACACATGCGTACTCTCCTTATGTCCCCTGTCCCGCAACGC
ATTGCTACAAAATTTGATCGCTTCGGGCTACCGTCTAGGAGGCCGGAAGGACGCTCCATATTGC
TTCCGGACCATCCTTTTGCTTCCCATCCCCATCCCCCTTTGCCTCCTCACGCTGTTTCCCCTCC
CCCGCCGTCTCTCCCTTCAGTTTGCGTGGGTTTTGGCGAGGCGGAGCCCTGGAGTAAAACCTGG
GGTCGGTGTTGTGAGACCCGGCCCTTGCGGTTGGGAGCCGGAGCTGTGGGGCGGGCTGACTGAG
ACTCCAGGGCCTGGTGCAGCCGAGAACCCCTCCCCTGTGCAGCTGCCCTGTCGCATGGTCCTAG
GAGTTTTTAAAAGCCAACTTTCTACAGGAAAGCAAAACTCCGGCGAAAGCATGTCCTCCCTCCC
TGGGTGCATGAGTTTGGCTGCAGCGCCAGCTGCGGCGGACTCTGCAGAGATTGCTGAGCTGCAG
CAGGCAGTGGTTGAAGAGCTGGGTATCTCTATGGAGGAACTTCGTCAGTTCATCGATGAAGAAC
TGGAAAAGATGGACTGTATACAGCAGCGCAAGAAGCAGCTGGCAGAGCTGGAGACGTGGGTGCT
GCAGAAGGAGTCTGAGGTGGCTTATGTTGATCGGCTGTTTGATGATGCATCTAGGGAAGTGACT
AATTGTGAGTCTTTGGTGAAGGATTTCTACTCTAAGCTGGGATTACAGTATCATGACAGTAGCT
CTGACGATGAAGCTTCCCAGCCTACAGAGATAATCGAGATTCCTGATGAAGATGATGATGTCCT
CAGTATTGATTCAGGTGATGCTGGGAGCAGAACGCCAAAAGATCAGAAGCTTCGTGAAGCTATG
GCTGCCTTAAGAAAATCAGCTCAAGATGTCCAGAAGTTCATGGATGCTGTGAATAAGAAAAGCA
GTTCTCAAGATCTACATAAAGGAACCTTGGGTCAGGTGTCTGGAGAACTGAGCAAAGATGGGGA
CCTGATAGTCAGCATGCGGATTCTGGGCAAGAAGAGGACTAAGACGTGGCACAAAGGCACCCTC
ATTGCCATCCAGACTGTCGGGCTAGGAAAGAAATACAAAGTGAAATTTGACAACAAAGGAAAGA
GTCTGCTGTCTGGGAACCATATTGCCTATGATTACCACCCTCCTGCTGACAAGCTGTTTGTGGG
CAGTCGAGTGGTGGCCAAATACAAAGATGGAAATCAGGTCTGGCTTTATGCTGGCATTGTAGCT
GAGACCCCTAACGTCAAGAACAAGCTCAGATTTTTAATTTTTTTTGATGATGGCTATGCTTCCT
ATGTCACTCAGTCCGAGCTGTATCCCATTTGCCGACCATTGAAAAAGACTTGGGAGGACATAGA
AGACAGCTCCTGCCGAGACTTCATAGAAGAATATATCACTGCCTATCCAAACCGCCCAATGGTA
CTTCTCAAGAGTGGCCAGCTTATTAAGACTGAGTGGGAAGGCACATGGTGGAAGTCTCGAGTTG
AAGAGGTTGATGGCAGCCTAGTCAGGATCCTCTTTCTGGATGACAAAAGATGTGAGTGGATCTA
TCGAGGCTCTACACGCCTGGAACCTATGTTCAGTATGAAGACATCCTCAGCCTCTGCAATGGAG
AAGAAGCAAGGGGGGCAACTCAGAACCCGTCCTAATATGGGTGCTGTGAGGAGCAAAGGTCCTG
TTGTTCAGTACACTCAGGATCTAACGAGTACTGGAATCCAGTTTAAGCCCATGGAGCCCCTGCA
GCCTATAGTCCCACCTGCCCCGCTTCCCATGCTTCCTCTTTCCCCCCAGGCAGGCGACAGTGAA
AGCTTAGAAAGCCAGCTTGCTCAATCACGGAAGCAAGTAGCCAAAAAGAGCACATCATTCCGAC
CAGGATCTGTGAGTTCTGGCCATTCCTCCCCTACTTCGCCCACACTCAGTGAAAATGTACCCCC
TGGGAAAATTGGAATGAACCAGACATACAGATCACCTTCAGCCTCTGTAACATCTACCCCAGCA
CCTGCAGCCCCTTCTGGGCCTCCAGCCCCTCCAGGGCCTCTTGCTCCTCCTGGACCACCGGCCC
CTCCAGCTTTCCACGGCATGTTAGAGCGGGCACCAGCTGAGCCCTCCTATCGTGCCCCTATGGA
GAAGCTTTTCTATTTACCTCATGTCTGCAGTTACACTTGTTTGTCCCGGATTAGACCCATGAGG
AATGAACAATATCGGGGCAAAAACCCTCTACTGGTCCCACTATTGTATGACTTCCGGAGGATGA
CAGCACGTCGCAGAGTTAACCGCAAGATGGGCTTCCATGTAATCTATAAGACACCCTGTGGTCT
CTGCCTTCGGACGATGCAGGAAATAGAGCGCTACCTTTTTGAGACTGGCTGTGACTTCCTGTAC
CTGGAGATGTTCTGTTTGGATCCATATGTCCTTGTTGACAGAAAGTTCCAGCCCTTTAAACCTT
TTTACTATATTTTGGACATCACCTATGGCAAAGAAGATGTTCCCCTGTCCTGTGTTAATGAGAT
TGACACAACTCCCCCACCCCAGGTGGCCTACAGCAAGGAACGCATTCCTGGCAAGGGTGTTTTC
ATTAACACAGGCCCTGAATTTCTGGTTGGCTGTGACTGCAAGGATGGGTGTCGGGATAAATCCA
AGTGTGCCTGCCATCAGCTCACTGTCCAGGCCACAGCCTGTACCCCAGGGGGTCAGATCAACCC
TAGCTCCGGCTACCAGCACAAAAGACTAGAAGAGTGTCTGCCCACAGGGGTTTATGAGTGTAAC
AAGCGCTGCAAATGTGACCCAAACATGTGCACAAATCGGTTGGTGCAGCATGGACTGCAGGTTC
GACTACAGCTGTTTAAGACACAGAACAAGGGCTGGGGCATCCGCTGCTTGGATGACATTGCTAA
AGGCTCTTTTGTCTGCATTTATGCAGGCAAAATCCTGACAGATGACTTTGCAGACAAAGAAGGC
CTCGAGATGGGTGATGAGTACTTTGCAAATCTGGACCACATTGAAAGTGTGGAGAACTTCAAGG
AAGGATATGAGAGTGACGTCCCCAGCTCCTCTGACAGCAGTGGGGTGGATATGAAGGACCAGGA
GGATGGCAACAGTGGCTCAGAGGACCCTGAGGAGTCCAACGACGACAGCTCCGATGACAACTTC
TGTAAGGACGAGGACTTCAGCACCAGTTCAGTGTGGCGTAGCTATGCAACCCGGAGGCAGACTC
GGGGTCAGAAGGAGAGTGAACTGTCTGAGGTGACTTCAAAGGACTCCCGCGCCCCAGACCGTGG
GCCTCCCCACGTCCCTATCACTCCCTCAGGATCTGTAGGGGGTTGCAATCCACCTTCCTCCGAA
GAGACACCCAAGAACAAGGTGGCCTCATGGTTGAGCTGCAATAGTGTCAGTGAAGGTGGATTTG
CTGACTCTGACAGCCGTTCCTCCTTTAAGACTAGTGAAGGTGGAGATGGCCGTGCTGGGGGAGG
CCGGGGAGAGGCTGAAAGAGCCTCTACCTCAGGATTGAGCTTCAAGGATGAAGGAGACAGTAAG
CAATCTAAAAAAGAGGACCCTGAGGACCGAAACAAGATGTCAGTAGTTACTGAAGGCTCTCAGA
ATCATGGACACAATCCTCCCATGAAGTCTGAAGGGCTTCGCCGACCAGCTAGTAAAATTTCTAT
GCTCCAGAGCCAGCGAGTTGTGACTTCTACTCAGTCAAACCCTGATGATATCCTAACACTGTCC
AGCAGCACAGAAAGTGAGGGGGAAAGTGGAACCAGCCGAAAGCCCACTACTGGTCAGACTTCAG
CCACAGCAGTTGACAGTGATGACATCCAGACCATCTCTTCTGGCTCTGATGGCGATGACTTTGA
GGACAAGAAGAACTTGTCGGGACCAACAAAGCGTCAGGTGGCAGTAAAATCAACCCGAGGCTTT
GCTCTTAAATCAACCCATGGTATTGCCATTAAATCAACCAACATGGCTTCCGTGGACAAGGGGG
AGAGTGCACCAGTTCGTAAGAACACACGCCAGTTCTATGATGGTGAAGAGTCTTGCTACATCAT
TGATGCCAAACTTGAAGGCAACCTAGGCCGCTACCTCAATCACAGTTGCAGCCCCAACCTGTTT
GTCCAGAACGTTTTTGTGGATACCCATGATCTTCGCTTCCCTTGGGTGGCCTTTTTTGCCAGCA
AGAGAATCCGGGCTGGAACAGAACTCACTTGGGATTACAACTATGAAGTGGGCAGTGTGGAAGG
CAAGGAACTGCTGTGCTGCTGTGGAGCCATTGAATGCAGAGGGCGGCTTCTCTAGAGGAAGACT
CTTCCTCACTCTGAGGATCCCTTCCCCAGGAACTGGGTCTTTCTGACTCCACGTCTCTGATCTG
GCTTCTCCCCAGCTCCTAGTAGATAAAAGTGGGGGTCCTAGATCAGGACGTTGCCAGCGTGGTG
CTAGCAGGCACTAGGGTGGGATGACCACCCTAGCATCAGCCTGAGGTCCTTCTCATCCCGTATG
TGTTCATGATTCACATGCGCCGTGTATCTGGTTTGTATGGTTTCTTGAAAGTCTTCTAACAAGA
TGATAAAATAGAGCTTGTGGTTTGTCTTCTCTCCTCAGCCCCATCTTGACCTTCCAGGGAGATG
TCATTTCCCAATGGCAACTATCATTAGTTTACCCCTTGATTTTATTTGCCTTGTGTAATTTTTA
ACAGCAACAAAAGTTCCATGACCAGGAGGGAAGCCTAAGAAAAATAACCCTTCTCAAGTCTTAA
TAGTCTGACACAGTCATGTTTTATTTAACCTTTAATATACTTTAATTAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232914 ⟹ XP_006232976

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,587,722 - 185,618,798 (-)	NCBI
mRatBN7.2	2	182,898,738 - 182,929,815 (-)	NCBI
Rnor_6.0	2	196,495,876 - 196,527,022 (-)	NCBI
Rnor_5.0	2	215,994,295 - 216,025,842 (-)	NCBI

Sequence:

show sequence

TGAGGCTGAGGTGGACCCGGGAGGGTTTGCTTGTAGGAGGTTAGGGCTGTGTGTGGAAACTTGG
CGGGAGAGAAGCGAGGCGGGGGCGGGTCGGCCTAAGGCGGTGGCCGCGGGTGGGCGTGAGGTGG
TGCGTGCGGGAGGCGCGAGAAGGCGCCGGAGGCCGCTGCGTTCCTCGGTTCCTCCGCGGCTCAG
GCGGCCGAGACCCTTGTGCGCGTTATTCGGAGGTGGCTGTTGGGTGGTCGCCATTGCTTCAAGC
TTCGCTCTGTTGATGGCGAAAGCATGTCCTCCCTCCCTGGGTGCATGAGTTTGGCTGCAGCGCC
AGCTGCGGCGGACTCTGCAGAGATTGCTGAGCTGCAGCAGGCAGTGGTTGAAGAGCTGGGTATC
TCTATGGAGGAACTTCGTCAGTTCATCGATGAAGAACTGGAAAAGATGGACTGTATACAGCAGC
GCAAGAAGCAGCTGGCAGAGCTGGAGACGTGGGTGCTGCAGAAGGAGTCTGAGGTGGCTTATGT
TGATCGGCTGTTTGATGATGCATCTAGGGAAGTGACTAATTGTGAGTCTTTGGTGAAGGATTTC
TACTCTAAGCTGGGATTACAGTATCATGACAGTAGCTCTGACGATGAAGCTTCCCAGCCTACAG
AGATAATCGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAGGTGATGCTGGGAG
CAGAACGCCAAAAGATCAGAAGCTTCGTGAAGCTATGGCTGCCTTAAGAAAATCAGCTCAAGAT
GTCCAGAAGTTCATGGATGCTGTGAATAAGAAAAGCAGTTCTCAAGATCTACATAAAGGAACCT
TGGGTCAGGTGTCTGGAGAACTGAGCAAAGATGGGGACCTGATAGTCAGCATGCGGATTCTGGG
CAAGAAGAGGACTAAGACGTGGCACAAAGGCACCCTCATTGCCATCCAGACTGTCGGGCTAGGA
AAGAAATACAAAGTGAAATTTGACAACAAAGGAAAGAGTCTGCTGTCTGGGAACCATATTGCCT
ATGATTACCACCCTCCTGCTGACAAGCTGTTTGTGGGCAGTCGAGTGGTGGCCAAATACAAAGA
TGGAAATCAGGTCTGGCTTTATGCTGGCATTGTAGCTGAGACCCCTAACGTCAAGAACAAGCTC
AGATTTTTAATTTTTTTTGATGATGGCTATGCTTCCTATGTCACTCAGTCCGAGCTGTATCCCA
TTTGCCGACCATTGAAAAAGACTTGGGAGGACATAGAAGACAGCTCCTGCCGAGACTTCATAGA
AGAATATATCACTGCCTATCCAAACCGCCCAATGGTACTTCTCAAGAGTGGCCAGCTTATTAAG
ACTGAGTGGGAAGGCACATGGTGGAAGTCTCGAGTTGAAGAGGTTGATGGCAGCCTAGTCAGGA
TCCTCTTTCTGGATGACAAAAGATGTGAGTGGATCTATCGAGGCTCTACACGCCTGGAACCTAT
GTTCAGTATGAAGACATCCTCAGCCTCTGCAATGGAGAAGAAGCAAGGGGGGCAACTCAGAACC
CGTCCTAATATGGGTGCTGTGAGGAGCAAAGGTCCTGTTGTTCAGTACACTCAGGATCTAACGA
GTACTGGAATCCAGTTTAAGCCCATGGAGCCCCTGCAGCCTATAGTCCCACCTGCCCCGCTTCC
CATGCTTCCTCTTTCCCCCCAGGCAGGCGACAGTGAAAGCTTAGAAAGCCAGCTTGCTCAATCA
CGGAAGCAAGTAGCCAAAAAGAGCACATCATTCCGACCAGGATCTGTGAGTTCTGGCCATTCCT
CCCCTACTTCGCCCACACTCAGTGAAAATGTACCCCCTGGGAAAATTGGAATGAACCAGACATA
CAGATCACCTTCAGCCTCTGTAACATCTACCCCAGCACCTGCAGCCCCTTCTGGGCCTCCAGCC
CCTCCAGGGCCTCTTGCTCCTCCTGGACCACCGGCCCCTCCAGCTTTCCACGGCATGTTAGAGC
GGGCACCAGCTGAGCCCTCCTATCGTGCCCCTATGGAGAAGCTTTTCTATTTACCTCATGTCTG
CAGTTACACTTGTTTGTCCCGGATTAGACCCATGAGGAATGAACAATATCGGGGCAAAAACCCT
CTACTGGTCCCACTATTGTATGACTTCCGGAGGATGACAGCACGTCGCAGAGTTAACCGCAAGA
TGGGCTTCCATGTAATCTATAAGACACCCTGTGGTCTCTGCCTTCGGACGATGCAGGAAATAGA
GCGCTACCTTTTTGAGACTGGCTGTGACTTCCTGTACCTGGAGATGTTCTGTTTGGATCCATAT
GTCCTTGTTGACAGAAAGTTCCAGCCCTTTAAACCTTTTTACTATATTTTGGACATCACCTATG
GCAAAGAAGATGTTCCCCTGTCCTGTGTTAATGAGATTGACACAACTCCCCCACCCCAGGTGGC
CTACAGCAAGGAACGCATTCCTGGCAAGGGTGTTTTCATTAACACAGGCCCTGAATTTCTGGTT
GGCTGTGACTGCAAGGATGGGTGTCGGGATAAATCCAAGTGTGCCTGCCATCAGCTCACTGTCC
AGGCCACAGCCTGTACCCCAGGGGGTCAGATCAACCCTAGCTCCGGCTACCAGCACAAAAGACT
AGAAGAGTGTCTGCCCACAGGGGTTTATGAGTGTAACAAGCGCTGCAAATGTGACCCAAACATG
TGCACAAATCGGTTGGTGCAGCATGGACTGCAGGTTCGACTACAGCTGTTTAAGACACAGAACA
AGGGCTGGGGCATCCGCTGCTTGGATGACATTGCTAAAGGCTCTTTTGTCTGCATTTATGCAGG
CAAAATCCTGACAGATGACTTTGCAGACAAAGAAGGCCTCGAGATGGGTGATGAGTACTTTGCA
AATCTGGACCACATTGAAAGTGTGGAGAACTTCAAGGAAGGATATGAGAGTGACGTCCCCAGCT
CCTCTGACAGCAGTGGGGTGGATATGAAGGACCAGGAGGATGGCAACAGTGGCTCAGAGGACCC
TGAGGAGTCCAACGACGACAGCTCCGATGACAACTTCTGTAAGGACGAGGACTTCAGCACCAGT
TCAGTGTGGCGTAGCTATGCAACCCGGAGGCAGACTCGGGGTCAGAAGGAGAGTGAACTGTCTG
AGGTGACTTCAAAGGACTCCCGCGCCCCAGACCGTGGGCCTCCCCACGTCCCTATCACTCCCTC
AGGATCTGTAGGGGGTTGCAATCCACCTTCCTCCGAAGAGACACCCAAGAACAAGGTGGCCTCA
TGGTTGAGCTGCAATAGTGTCAGTGAAGGTGGATTTGCTGACTCTGACAGCCGTTCCTCCTTTA
AGACTAGTGAAGGTGGAGATGGCCGTGCTGGGGGAGGCCGGGGAGAGGCTGAAAGAGCCTCTAC
CTCAGGATTGAGCTTCAAGGATGAAGGAGACAGTAAGCAATCTAAAAAAGAGGACCCTGAGGAC
CGAAACAAGATGTCAGTAGTTACTGAAGGCTCTCAGAATCATGGACACAATCCTCCCATGAAGT
CTGAAGGGCTTCGCCGACCAGCTAGTAAAATTTCTATGCTCCAGAGCCAGCGAGTTGTGACTTC
TACTCAGTCAAACCCTGATGATATCCTAACACTGTCCAGCAGCACAGAAAGTGAGGGGGAAAGT
GGAACCAGCCGAAAGCCCACTACTGGTCAGACTTCAGCCACAGCAGTTGACAGTGATGACATCC
AGACCATCTCTTCTGGCTCTGATGGCGATGACTTTGAGGACAAGAAGAACTTGTCGGGACCAAC
AAAGCGTCAGGTGGCAGTAAAATCAACCCGAGGCTTTGCTCTTAAATCAACCCATGGTATTGCC
ATTAAATCAACCAACATGGCTTCCGTGGACAAGGGGGAGAGTGCACCAGTTCGTAAGAACACAC
GCCAGTTCTATGATGGTGAAGAGTCTTGCTACATCATTGATGCCAAACTTGAAGGCAACCTAGG
CCGCTACCTCAATCACAGTTGCAGCCCCAACCTGTTTGTCCAGAACGTTTTTGTGGATACCCAT
GATCTTCGCTTCCCTTGGGTGGCCTTTTTTGCCAGCAAGAGAATCCGGGCTGGAACAGAACTCA
CTTGGGATTACAACTATGAAGTGGGCAGTGTGGAAGGCAAGGAACTGCTGTGCTGCTGTGGAGC
CATTGAATGCAGAGGGCGGCTTCTCTAGAGGAAGACTCTTCCTCACTCTGAGGATCCCTTCCCC
AGGAACTGGGTCTTTCTGACTCCACGTCTCTGATCTGGCTTCTCCCCAGCTCCTAGTAGATAAA
AGTGGGGGTCCTAGATCAGGACGTTGCCAGCGTGGTGCTAGCAGGCACTAGGGTGGGATGACCA
CCCTAGCATCAGCCTGAGGTCCTTCTCATCCCGTATGTGTTCATGATTCACATGCGCCGTGTAT
CTGGTTTGTATGGTTTCTTGAAAGTCTTCTAACAAGATGATAAAATAGAGCTTGTGGTTTGTCT
TCTCTCCTCAGCCCCATCTTGACCTTCCAGGGAGATGTCATTTCCCAATGGCAACTATCATTAG
TTTACCCCTTGATTTTATTTGCCTTGTGTAATTTTTAACAGCAACAAAAGTTCCATGACCAGGA
GGGAAGCCTAAGAAAAATAACCCTTCTCAAGTCTTAATAGTCTGACACAGTCATGTTTTATTTA
ACCTTTAATATACTTTAATTAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232917 ⟹ XP_006232979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,587,722 - 185,608,165 (-)	NCBI
mRatBN7.2	2	182,898,738 - 182,919,184 (-)	NCBI
Rnor_6.0	2	196,495,876 - 196,516,299 (-)	NCBI
Rnor_5.0	2	215,994,295 - 216,025,842 (-)	NCBI

Sequence:

show sequence

TCTTTCCGGAATGTTATTGACAGCTTTGCCTCTCACAGTGCTGTTTGACTTGCCAGTCTCTTTT
TAACATAGTTTTATGTCCACAGTCAGTCTGAGGTGACTGATGGATGTGGTGGCTCAGGCTGTTA
ACCGTTGTTAGTTGCTGTTGGTAAGGAGTGGGCCATAGTTGGCTGTGGCAGAGGCTAGTAGGGT
ACGCCAACGGAGGTAGAGTCGTGGGGATGTTCTGTATTCATTTCTCCTGTCCGCATAAGCAGTT
GGTTGTCTTGTGTTTCTGCCTCTTCTGTCCAAAGTTTAGCAAAAGTGGCTAATGGTCACAGAAT
GCCTCAGTCTCCTCTGTTTCTACACTGCCTTCTGATTTTGAGATGGTATCTTTTGTATCCCAGG
CTGGCCTTGAGTTTCCTGTGTTGCTGAGGATGACCTTAAACTTCTGATCCTCCTGCCTTCCCTA
CCTGAGTACTTGAGATTACACCATGAACTATGCCAGGCGTATACAGGGCTGAGGTTCAAATTCA
GGGCCCTGAGCAGGAACCTTGGGTCAGGTGTCTGGAGAACTGAGCAAAGATGGGGACCTGATAG
TCAGCATGCGGATTCTGGGCAAGAAGAGGACTAAGACGTGGCACAAAGGCACCCTCATTGCCAT
CCAGACTGTCGGGCTAGGAAAGAAATACAAAGTGAAATTTGACAACAAAGGAAAGAGTCTGCTG
TCTGGGAACCATATTGCCTATGATTACCACCCTCCTGCTGACAAGCTGTTTGTGGGCAGTCGAG
TGGTGGCCAAATACAAAGATGGAAATCAGGTCTGGCTTTATGCTGGCATTGTAGCTGAGACCCC
TAACGTCAAGAACAAGCTCAGATTTTTAATTTTTTTTGATGATGGCTATGCTTCCTATGTCACT
CAGTCCGAGCTGTATCCCATTTGCCGACCATTGAAAAAGACTTGGGAGGACATAGAAGACAGCT
CCTGCCGAGACTTCATAGAAGAATATATCACTGCCTATCCAAACCGCCCAATGGTACTTCTCAA
GAGTGGCCAGCTTATTAAGACTGAGTGGGAAGGCACATGGTGGAAGTCTCGAGTTGAAGAGGTT
GATGGCAGCCTAGTCAGGATCCTCTTTCTGGATGACAAAAGATGTGAGTGGATCTATCGAGGCT
CTACACGCCTGGAACCTATGTTCAGTATGAAGACATCCTCAGCCTCTGCAATGGAGAAGAAGCA
AGGGGGGCAACTCAGAACCCGTCCTAATATGGGTGCTGTGAGGAGCAAAGGTCCTGTTGTTCAG
TACACTCAGGATCTAACGAGTACTGGAATCCAGTTTAAGCCCATGGAGCCCCTGCAGCCTATAG
TCCCACCTGCCCCGCTTCCCATGCTTCCTCTTTCCCCCCAGGCAGGCGACAGTGAAAGCTTAGA
AAGCCAGCTTGCTCAATCACGGAAGCAAGTAGCCAAAAAGAGCACATCATTCCGACCAGGATCT
GTGAGTTCTGGCCATTCCTCCCCTACTTCGCCCACACTCAGTGAAAATGTACCCCCTGGGAAAA
TTGGAATGAACCAGACATACAGATCACCTTCAGCCTCTGTAACATCTACCCCAGCACCTGCAGC
CCCTTCTGGGCCTCCAGCCCCTCCAGGGCCTCTTGCTCCTCCTGGACCACCGGCCCCTCCAGCT
TTCCACGGCATGTTAGAGCGGGCACCAGCTGAGCCCTCCTATCGTGCCCCTATGGAGAAGCTTT
TCTATTTACCTCATGTCTGCAGTTACACTTGTTTGTCCCGGATTAGACCCATGAGGAATGAACA
ATATCGGGGCAAAAACCCTCTACTGGTCCCACTATTGTATGACTTCCGGAGGATGACAGCACGT
CGCAGAGTTAACCGCAAGATGGGCTTCCATGTAATCTATAAGACACCCTGTGGTCTCTGCCTTC
GGACGATGCAGGAAATAGAGCGCTACCTTTTTGAGACTGGCTGTGACTTCCTGTACCTGGAGAT
GTTCTGTTTGGATCCATATGTCCTTGTTGACAGAAAGTTCCAGCCCTTTAAACCTTTTTACTAT
ATTTTGGACATCACCTATGGCAAAGAAGATGTTCCCCTGTCCTGTGTTAATGAGATTGACACAA
CTCCCCCACCCCAGGTGGCCTACAGCAAGGAACGCATTCCTGGCAAGGGTGTTTTCATTAACAC
AGGCCCTGAATTTCTGGTTGGCTGTGACTGCAAGGATGGGTGTCGGGATAAATCCAAGTGTGCC
TGCCATCAGCTCACTGTCCAGGCCACAGCCTGTACCCCAGGGGGTCAGATCAACCCTAGCTCCG
GCTACCAGCACAAAAGACTAGAAGAGTGTCTGCCCACAGGGGTTTATGAGTGTAACAAGCGCTG
CAAATGTGACCCAAACATGTGCACAAATCGGTTGGTGCAGCATGGACTGCAGGTTCGACTACAG
CTGTTTAAGACACAGAACAAGGGCTGGGGCATCCGCTGCTTGGATGACATTGCTAAAGGCTCTT
TTGTCTGCATTTATGCAGGCAAAATCCTGACAGATGACTTTGCAGACAAAGAAGGCCTCGAGAT
GGGTGATGAGTACTTTGCAAATCTGGACCACATTGAAAGTGTGGAGAACTTCAAGGAAGGATAT
GAGAGTGACGTCCCCAGCTCCTCTGACAGCAGTGGGGTGGATATGAAGGACCAGGAGGATGGCA
ACAGTGGCTCAGAGGACCCTGAGGAGTCCAACGACGACAGCTCCGATGACAACTTCTGTAAGGA
CGAGGACTTCAGCACCAGTTCAGTGTGGCGTAGCTATGCAACCCGGAGGCAGACTCGGGGTCAG
AAGGAGAGTGAACTGTCTGAGGTGACTTCAAAGGACTCCCGCGCCCCAGACCGTGGGCCTCCCC
ACGTCCCTATCACTCCCTCAGGATCTGTAGGGGGTTGCAATCCACCTTCCTCCGAAGAGACACC
CAAGAACAAGGTGGCCTCATGGTTGAGCTGCAATAGTGTCAGTGAAGGTGGATTTGCTGACTCT
GACAGCCGTTCCTCCTTTAAGACTAGTGAAGGTGGAGATGGCCGTGCTGGGGGAGGCCGGGGAG
AGGCTGAAAGAGCCTCTACCTCAGGATTGAGCTTCAAGGATGAAGGAGACAGTAAGCAATCTAA
AAAAGAGGACCCTGAGGACCGAAACAAGATGTCAGTAGTTACTGAAGGCTCTCAGAATCATGGA
CACAATCCTCCCATGAAGTCTGAAGGGCTTCGCCGACCAGCTAGTAAAATTTCTATGCTCCAGA
GCCAGCGAGTTGTGACTTCTACTCAGTCAAACCCTGATGATATCCTAACACTGTCCAGCAGCAC
AGAAAGTGAGGGGGAAAGTGGAACCAGCCGAAAGCCCACTACTGGTCAGACTTCAGCCACAGCA
GTTGACAGTGATGACATCCAGACCATCTCTTCTGGCTCTGATGGCGATGACTTTGAGGACAAGA
AGAACTTGTCGGGACCAACAAAGCGTCAGGTGGCAGTAAAATCAACCCGAGGCTTTGCTCTTAA
ATCAACCCATGGTATTGCCATTAAATCAACCAACATGGCTTCCGTGGACAAGGGGGAGAGTGCA
CCAGTTCGTAAGAACACACGCCAGTTCTATGATGGTGAAGAGTCTTGCTACATCATTGATGCCA
AACTTGAAGGCAACCTAGGCCGCTACCTCAATCACAGTTGCAGCCCCAACCTGTTTGTCCAGAA
CGTTTTTGTGGATACCCATGATCTTCGCTTCCCTTGGGTGGCCTTTTTTGCCAGCAAGAGAATC
CGGGCTGGAACAGAACTCACTTGGGATTACAACTATGAAGTGGGCAGTGTGGAAGGCAAGGAAC
TGCTGTGCTGCTGTGGAGCCATTGAATGCAGAGGGCGGCTTCTCTAGAGGAAGACTCTTCCTCA
CTCTGAGGATCCCTTCCCCAGGAACTGGGTCTTTCTGACTCCACGTCTCTGATCTGGCTTCTCC
CCAGCTCCTAGTAGATAAAAGTGGGGGTCCTAGATCAGGACGTTGCCAGCGTGGTGCTAGCAGG
CACTAGGGTGGGATGACCACCCTAGCATCAGCCTGAGGTCCTTCTCATCCCGTATGTGTTCATG
ATTCACATGCGCCGTGTATCTGGTTTGTATGGTTTCTTGAAAGTCTTCTAACAAGATGATAAAA
TAGAGCTTGTGGTTTGTCTTCTCTCCTCAGCCCCATCTTGACCTTCCAGGGAGATGTCATTTCC
CAATGGCAACTATCATTAGTTTACCCCTTGATTTTATTTGCCTTGTGTAATTTTTAACAGCAAC
AAAAGTTCCATGACCAGGAGGGAAGCCTAAGAAAAATAACCCTTCTCAAGTCTTAATAGTCTGA
CACAGTCATGTTTTATTTAACCTTTAATATACTTTAATTAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039103159 ⟹ XP_038959087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,587,722 - 185,617,915 (-)	NCBI
mRatBN7.2	2	182,898,738 - 182,928,930 (-)	NCBI

RefSeq Acc Id:

XM_039103160 ⟹ XP_038959088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,587,722 - 185,606,622 (-)	NCBI
mRatBN7.2	2	182,898,738 - 182,917,877 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258104	(Get FASTA)	NCBI Sequence Viewer
	XP_006232975	(Get FASTA)	NCBI Sequence Viewer
	XP_006232976	(Get FASTA)	NCBI Sequence Viewer
	XP_006232979	(Get FASTA)	NCBI Sequence Viewer
	XP_038959087	(Get FASTA)	NCBI Sequence Viewer
	XP_038959088	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028709
	ENSRNOP00000028709.5
	ENSRNOP00000073356
	ENSRNOP00000073356.3
	ENSRNOP00000097818.2

RefSeq Acc Id:

NP_001258104 ⟸ NM_001271175

- UniProtKB:

A0A8I6ASK2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSLPGCMSLAAAPAAADSAEIAELQQAVVEELGISMEELRQFIDEELEKMDCIQQRKKQLAEL
ETWVLQKESEVAYVDRLFDDASREVTNCESLVKDFYSKLGLQYHDSSSDDEASQPTEIIEIPDE
DDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDLHKGTLGQVSGEL
SKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGLGKKYKVKFDNKGKSLLSGNHIAYDYHPPAD
KLFVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKT
WEDIEDSSCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKR
CEWIYRGSTRLEPMFSMKTSSASAMEKKQGGQLRTRPNMGAVRSKGPVVQYTQDLTSTGIQFKP
MEPLQPIVPPAPLPMLPLSPQAGDSESLESQLAQSRKQVAKKSTSFRPGSVSSGHSSPTSPTLS
ENVPPGKIGMNQTYRSPSASVTSTPAPAAPSGPPAPPGPLAPPGPPAPPAFHGMLERAPAEPSY
RAPMEKLFYLPHVCSYTCLSRIRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYK
TPCGLCLRTMQEIERYLFETGCDFLYLEMFCLDPYVLVDRKFQPFKPFYYILDITYGKEDVPLS
CVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTVQATACTPG
GQINPSSGYQHKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCL
DDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDVPSSSDSSGVD
MKDQEDGNSGSEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKESELSEVTSKDSR
APDRGPPHVPITPSGSVGGCNPPSSEETPKNKVASWLSCNSVSEGGFADSDSRSSFKTSEGGDG
RAGGGRGEAERASTSGLSFKDEGDSKQSKKEDPEDRNKMSVVTEGSQNHGHNPPMKSEGLRRPA
SKISMLQSQRVVTSTQSNPDDILTLSSSTESEGESGTSRKPTTGQTSATAVDSDDIQTISSGSD
GDDFEDKKNLSGPTKRQVAVKSTRGFALKSTHGIAIKSTNMASVDKGESAPVRKNTRQFYDGEE
SCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEV
GSVEGKELLCCCGAIECRGRLL

hide sequence

RefSeq Acc Id:	XP_006232975 ⟸ XM_006232913
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ASK2 (UniProtKB/TrEMBL), D4A081 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVLGVFKSQLSTGKQNSGESMSSLPGCMSLAAAPAAADSAEIAELQQAVVEELGISMEELRQFI DEELEKMDCIQQRKKQLAELETWVLQKESEVAYVDRLFDDASREVTNCESLVKDFYSKLGLQYH DSSSDDEASQPTEIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVN KKSSSQDLHKGTLGQVSGELSKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGLGKKYKVKFDN KGKSLLSGNHIAYDYHPPADKLFVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDG YASYVTQSELYPICRPLKKTWEDIEDSSCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEGTWWK SRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASAMEKKQGGQLRTRPNMGAVRS KGPVVQYTQDLTSTGIQFKPMEPLQPIVPPAPLPMLPLSPQAGDSESLESQLAQSRKQVAKKST SFRPGSVSSGHSSPTSPTLSENVPPGKIGMNQTYRSPSASVTSTPAPAAPSGPPAPPGPLAPPG PPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRIRPMRNEQYRGKNPLLVPLLYDF RRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLYLEMFCLDPYVLVDRKFQP FKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCR DKSKCACHQLTVQATACTPGGQINPSSGYQHKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHG LQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVE NFKEGYESDVPSSSDSSGVDMKDQEDGNSGSEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATR RQTRGQKESELSEVTSKDSRAPDRGPPHVPITPSGSVGGCNPPSSEETPKNKVASWLSCNSVSE GGFADSDSRSSFKTSEGGDGRAGGGRGEAERASTSGLSFKDEGDSKQSKKEDPEDRNKMSVVTE GSQNHGHNPPMKSEGLRRPASKISMLQSQRVVTSTQSNPDDILTLSSSTESEGESGTSRKPTTG QTSATAVDSDDIQTISSGSDGDDFEDKKNLSGPTKRQVAVKSTRGFALKSTHGIAIKSTNMASV DKGESAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAF FASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL hide sequence

RefSeq Acc Id:	XP_006232976 ⟸ XM_006232914
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ASK2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSLPGCMSLAAAPAAADSAEIAELQQAVVEELGISMEELRQFIDEELEKMDCIQQRKKQLAEL ETWVLQKESEVAYVDRLFDDASREVTNCESLVKDFYSKLGLQYHDSSSDDEASQPTEIIEIPDE DDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDLHKGTLGQVSGEL SKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGLGKKYKVKFDNKGKSLLSGNHIAYDYHPPAD KLFVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKT WEDIEDSSCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKR CEWIYRGSTRLEPMFSMKTSSASAMEKKQGGQLRTRPNMGAVRSKGPVVQYTQDLTSTGIQFKP MEPLQPIVPPAPLPMLPLSPQAGDSESLESQLAQSRKQVAKKSTSFRPGSVSSGHSSPTSPTLS ENVPPGKIGMNQTYRSPSASVTSTPAPAAPSGPPAPPGPLAPPGPPAPPAFHGMLERAPAEPSY RAPMEKLFYLPHVCSYTCLSRIRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYK TPCGLCLRTMQEIERYLFETGCDFLYLEMFCLDPYVLVDRKFQPFKPFYYILDITYGKEDVPLS CVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTVQATACTPG GQINPSSGYQHKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCL DDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDVPSSSDSSGVD MKDQEDGNSGSEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKESELSEVTSKDSR APDRGPPHVPITPSGSVGGCNPPSSEETPKNKVASWLSCNSVSEGGFADSDSRSSFKTSEGGDG RAGGGRGEAERASTSGLSFKDEGDSKQSKKEDPEDRNKMSVVTEGSQNHGHNPPMKSEGLRRPA SKISMLQSQRVVTSTQSNPDDILTLSSSTESEGESGTSRKPTTGQTSATAVDSDDIQTISSGSD GDDFEDKKNLSGPTKRQVAVKSTRGFALKSTHGIAIKSTNMASVDKGESAPVRKNTRQFYDGEE SCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEV GSVEGKELLCCCGAIECRGRLL hide sequence

RefSeq Acc Id:	XP_006232979 ⟸ XM_006232917
- Peptide Label:	isoform X4
- UniProtKB:	A6K2Y7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRILGKKRTKTWHKGTLIAIQTVGLGKKYKVKFDNKGKSLLSGNHIAYDYHPPADKLFVGSRVV AKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDSSC RDFIEEYITAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGST RLEPMFSMKTSSASAMEKKQGGQLRTRPNMGAVRSKGPVVQYTQDLTSTGIQFKPMEPLQPIVP PAPLPMLPLSPQAGDSESLESQLAQSRKQVAKKSTSFRPGSVSSGHSSPTSPTLSENVPPGKIG MNQTYRSPSASVTSTPAPAAPSGPPAPPGPLAPPGPPAPPAFHGMLERAPAEPSYRAPMEKLFY LPHVCSYTCLSRIRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRT MQEIERYLFETGCDFLYLEMFCLDPYVLVDRKFQPFKPFYYILDITYGKEDVPLSCVNEIDTTP PPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTVQATACTPGGQINPSSGY QHKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFV CIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDVPSSSDSSGVDMKDQEDGNS GSEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKESELSEVTSKDSRAPDRGPPHV PITPSGSVGGCNPPSSEETPKNKVASWLSCNSVSEGGFADSDSRSSFKTSEGGDGRAGGGRGEA ERASTSGLSFKDEGDSKQSKKEDPEDRNKMSVVTEGSQNHGHNPPMKSEGLRRPASKISMLQSQ RVVTSTQSNPDDILTLSSSTESEGESGTSRKPTTGQTSATAVDSDDIQTISSGSDGDDFEDKKN LSGPTKRQVAVKSTRGFALKSTHGIAIKSTNMASVDKGESAPVRKNTRQFYDGEESCYIIDAKL EGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELL CCCGAIECRGRLL hide sequence

Ensembl Acc Id:

ENSRNOP00000073356 ⟸ ENSRNOT00000077325

Ensembl Acc Id:

ENSRNOP00000028709 ⟸ ENSRNOT00000028709

RefSeq Acc Id:	XP_038959087 ⟸ XM_039103159
- Peptide Label:	isoform X3
- UniProtKB:	A6K2Y7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038959088 ⟸ XM_039103160
- Peptide Label:	isoform X5
- UniProtKB:	A6K2Y7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000097818 ⟸ ENSRNOT00000111803

Protein Domains

MBD Post-SET Pre-SET SET

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K5A7-F1-model_v2	AlphaFold	A0A0G2K5A7	1-1322	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691547

Promoter ID:

EPDNEW_R2072

Type:

initiation region

Name:

Setdb1_1

Description:

SET domain, bifurcated 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	196,527,211 - 196,527,271	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308370	AgrOrtholog
BioCyc Gene	G2FUF-52097	BioCyc
Ensembl Genes	ENSRNOG00000021143	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000028709	ENTREZGENE
	ENSRNOT00000028709.9	UniProtKB/TrEMBL
	ENSRNOT00000077325	ENTREZGENE
	ENSRNOT00000077325.3	UniProtKB/TrEMBL
	ENSRNOT00000111803.2	UniProtKB/TrEMBL
Gene3D-CATH	2.170.270.10	UniProtKB/TrEMBL
	2.30.30.140	UniProtKB/TrEMBL
InterPro	DNA-bd_integrase-typ	UniProtKB/TrEMBL
	DUF5604	UniProtKB/TrEMBL
	Hist-Lys_N-MeTrfase_SETDB1	UniProtKB/TrEMBL
	Methyl_CpG_DNA-bd	UniProtKB/TrEMBL
	Post-SET_dom	UniProtKB/TrEMBL
	Pre-SET_dom	UniProtKB/TrEMBL
	SET_dom	UniProtKB/TrEMBL
	SET_dom_sf	UniProtKB/TrEMBL
	SETDB1/2-like_MBD	UniProtKB/TrEMBL
	SETDB_methyltransferase	UniProtKB/TrEMBL
	Tudor	UniProtKB/TrEMBL
	Tudor_4	UniProtKB/TrEMBL
	TUDOR_5	UniProtKB/TrEMBL
NCBI Gene	Setdb1	ENTREZGENE
PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS	UniProtKB/TrEMBL
	HISTONE-LYSINE N-METHYLTRANSFERASE SETDB1	UniProtKB/TrEMBL
Pfam	DUF5604	UniProtKB/TrEMBL
	MBD	UniProtKB/TrEMBL
	Pre-SET	UniProtKB/TrEMBL
	SET	UniProtKB/TrEMBL
	Tudor_4	UniProtKB/TrEMBL
	TUDOR_5	UniProtKB/TrEMBL
PhenoGen	Setdb1	PhenoGen
PROSITE	MBD	UniProtKB/TrEMBL
	POST_SET	UniProtKB/TrEMBL
	PRE_SET	UniProtKB/TrEMBL
	SAM_MT43_SUVAR39_1	UniProtKB/TrEMBL
	SET	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000021143	RatGTEx
SMART	MBD	UniProtKB/TrEMBL
	PreSET	UniProtKB/TrEMBL
	SET	UniProtKB/TrEMBL
	TUDOR	UniProtKB/TrEMBL
Superfamily-SCOP	DNA-binding_integrase-type	UniProtKB/TrEMBL
	SSF82199	UniProtKB/TrEMBL
UniProt	A0A0G2K5A7_RAT	UniProtKB/TrEMBL
	A0A8I6ASK2	ENTREZGENE, UniProtKB/TrEMBL
	A6K2Y7	ENTREZGENE, UniProtKB/TrEMBL
	D4A081	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Setdb1	SET domain bifurcated histone lysine methyltransferase 1	LOC100911180	histone-lysine N-methyltransferase SETDB1-like	Data merged from RGD:6494849	737654	PROVISIONAL
2019-04-02	Setdb1	SET domain bifurcated histone lysine methyltransferase 1	Setdb1	SET domain, bifurcated 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100911180	histone-lysine N-methyltransferase SETDB1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-05-20	Setdb1	SET domain, bifurcated 1	Setdb1_predicted	SET domain, bifurcated 1 (predicted)	Symbol and Name updated	1299863	APPROVED
2008-05-20	Setdb1_predicted	SET domain, bifurcated 1 (predicted)	Setdb1	SET domain, bifurcated 1	Data merged from RGD:1587497	737654	APPROVED
2008-03-06	Setdb1	SET domain, bifurcated 1	LOC689883	similar to Histone-lysine N-methyltransferase, H3 lysine-9 specific 4 (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC689883	similar to Histone-lysine N-methyltransferase, H3 lysine-9 specific 4 (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET)	LOC682228	similar to Histone-lysine N-methyltransferase, H3 lysine-9 specific 4 (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET)	Data merged from RGD:1585761	1643240	APPROVED
2006-11-19	LOC689883	similar to Histone-lysine N-methyltransferase, H3 lysine-9 specific 4 (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC682228	similar to Histone-lysine N-methyltransferase, H3 lysine-9 specific 4 (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET)			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-12	Setdb1_predicted	SET domain, bifurcated 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

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Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

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Imported Annotations - PID (archival)