Nhsl1 (NHS-like 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Nhsl1 (NHS-like 1) Rattus norvegicus
Analyze
Symbol: Nhsl1
Name: NHS-like 1
RGD ID: 1308124
Description: Predicted to be involved in cell differentiation. Orthologous to human NHSL1 (NHS like 1); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; Brodifacoum.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC308631; NHS-like protein 1; RGD1308124; similar to KIAA1357 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,775,874 - 15,008,327 (+)NCBIGRCr8
mRatBN7.2112,956,525 - 13,188,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,956,021 - 13,187,547 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0113,472,694 - 13,705,364 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,595,295 - 13,705,396 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0115,159,938 - 15,389,483 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,479,076 - 13,620,447 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1113,479,137 - 13,620,300 (+)NCBI
Celera111,410,484 - 11,640,940 (+)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Nhsl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,775,874 - 15,008,327 (+)NCBIGRCr8
mRatBN7.2112,956,525 - 13,188,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,956,021 - 13,187,547 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0113,472,694 - 13,705,364 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,595,295 - 13,705,396 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0115,159,938 - 15,389,483 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,479,076 - 13,620,447 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1113,479,137 - 13,620,300 (+)NCBI
Celera111,410,484 - 11,640,940 (+)NCBICelera
Cytogenetic Map1p12NCBI
NHSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,422,043 - 138,693,212 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,422,043 - 138,692,571 (-)EnsemblGRCh38hg38GRCh38
GRCh376138,743,180 - 138,893,706 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366138,782,730 - 138,862,324 (-)NCBINCBI36Build 36hg18NCBI36
Celera6139,483,315 - 139,633,785 (-)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,304,593 - 136,455,165 (-)NCBIHuRef
CHM1_16139,005,817 - 139,156,712 (-)NCBICHM1_1
T2T-CHM13v2.06139,610,527 - 139,881,772 (-)NCBIT2T-CHM13v2.0
Nhsl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391018,193,419 - 18,409,640 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1018,194,733 - 18,409,640 (+)EnsemblGRCm39 Ensembl
GRCm381018,317,665 - 18,533,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,318,985 - 18,533,892 (+)EnsemblGRCm38mm10GRCm38
MGSCv371018,127,481 - 18,253,698 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361018,216,306 - 18,223,308 (+)NCBIMGSCv36mm8
Celera1018,313,288 - 18,439,830 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.65NCBI
Nhsl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543621,030,615 - 21,156,154 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,937,231 - 21,157,254 (+)NCBIChiLan1.0ChiLan1.0
NHSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,384,558 - 158,659,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,282,155 - 156,556,894 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,177,592 - 136,327,633 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,264,366 - 140,414,486 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,264,366 - 140,414,486 (-)Ensemblpanpan1.1panPan2
NHSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1130,738,366 - 30,872,559 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl130,740,449 - 30,871,878 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha131,617,175 - 31,750,409 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0130,901,606 - 31,036,079 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl130,879,539 - 31,139,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1130,780,128 - 30,913,958 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0130,662,212 - 30,796,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0130,970,955 - 31,105,271 (-)NCBIUU_Cfam_GSD_1.0
Nhsl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946125,794,488 - 125,920,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365605,573,459 - 5,699,587 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365605,574,469 - 5,699,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NHSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,852,032 - 25,987,833 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,663,554 - 25,988,106 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,985,373 - 29,125,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NHSL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,732,987 - 34,977,281 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,900,833 - 34,977,655 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660406,907,880 - 7,144,753 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nhsl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,349,906 - 15,485,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475315,349,238 - 15,483,223 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nhsl1
1783 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:42
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000015115, ENSRNOT00000015145
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat

Markers in Region
RH143252  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2113,010,344 - 13,010,511 (+)MAPPERmRatBN7.2
Rnor_6.0113,526,241 - 13,526,407NCBIRnor6.0
Rnor_5.0115,213,235 - 15,213,401UniSTSRnor5.0
RGSC_v3.4113,429,405 - 13,429,571UniSTSRGSC3.4
Celera111,464,392 - 11,464,558UniSTS
RH 3.4 Map1144.0UniSTS
Cytogenetic Map1p12UniSTS
RH144383  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2112,955,567 - 12,955,787 (+)MAPPERmRatBN7.2
Rnor_6.0113,471,990 - 13,472,209NCBIRnor6.0
Rnor_5.0115,159,264 - 15,159,483UniSTSRnor5.0
RGSC_v3.4113,374,756 - 13,374,975UniSTSRGSC3.4
Celera111,409,780 - 11,409,999UniSTS
RH 3.4 Map1132.1UniSTS
Cytogenetic Map1p12UniSTS
AU047428  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2113,123,920 - 13,124,117 (+)MAPPERmRatBN7.2
Rnor_6.0113,639,903 - 13,640,099NCBIRnor6.0
Rnor_5.0115,325,200 - 15,325,396UniSTSRnor5.0
RGSC_v3.4113,556,389 - 13,556,585UniSTSRGSC3.4
Celera111,577,619 - 11,577,815UniSTS
Cytogenetic Map1p12UniSTS
BE107683  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2113,178,487 - 13,178,645 (+)MAPPERmRatBN7.2
Rnor_6.0113,696,661 - 13,696,818NCBIRnor6.0
Rnor_5.0115,380,788 - 15,380,945UniSTSRnor5.0
RGSC_v3.4113,612,120 - 13,612,277UniSTSRGSC3.4
Celera111,632,196 - 11,632,353UniSTS
RH 3.4 Map1132.6UniSTS
Cytogenetic Map1p12UniSTS
BQ205638  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2113,165,472 - 13,165,622 (+)MAPPERmRatBN7.2
Rnor_6.0113,683,226 - 13,683,375NCBIRnor6.0
Rnor_5.0115,367,353 - 15,367,502UniSTSRnor5.0
RGSC_v3.4113,598,243 - 13,598,392UniSTSRGSC3.4
Celera111,619,155 - 11,619,304UniSTS
RH 3.4 Map1131.21UniSTS
Cytogenetic Map1p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 29 61 31 21
Low 1 14 57 41 19 41 8 11 13 4 20 11 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002725449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002725450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002728625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002728626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000079250   ⟹   ENSRNOP00000071093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl113,054,955 - 13,187,547 (+)Ensembl
Rnor_6.0 Ensembl113,595,295 - 13,705,396 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098675   ⟹   ENSRNOP00000097262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl112,956,021 - 13,187,547 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102189   ⟹   ENSRNOP00000077518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl112,956,021 - 13,187,547 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115660   ⟹   ENSRNOP00000094113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl113,122,916 - 13,187,547 (+)Ensembl
RefSeq Acc Id: NM_001427846   ⟹   NP_001414775
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,900,182 - 15,008,327 (+)NCBI
RefSeq Acc Id: XM_002728625   ⟹   XP_002728671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,938,858 - 15,008,327 (+)NCBI
mRatBN7.2113,121,678 - 13,188,580 (+)NCBI
Rnor_6.0113,637,752 - 13,705,364 (+)NCBI
Rnor_5.0115,159,938 - 15,389,483 (+)NCBI
RGSC_v3.4113,479,076 - 13,620,447 (+)RGD
Sequence:
RefSeq Acc Id: XM_002728626   ⟹   XP_002728672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,874,652 - 15,008,327 (+)NCBI
mRatBN7.2113,051,911 - 13,188,580 (+)NCBI
Rnor_6.0113,567,118 - 13,705,364 (+)NCBI
Rnor_5.0115,159,938 - 15,389,483 (+)NCBI
RGSC_v3.4113,479,076 - 13,620,447 (+)RGD
Sequence:
RefSeq Acc Id: XM_006227668   ⟹   XP_006227730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,874,659 - 15,008,327 (+)NCBI
mRatBN7.2113,051,910 - 13,188,580 (+)NCBI
Rnor_6.0113,567,118 - 13,705,364 (+)NCBI
Rnor_5.0115,159,938 - 15,389,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589823   ⟹   XP_017445312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,775,874 - 15,008,327 (+)NCBI
mRatBN7.2112,956,525 - 13,188,580 (+)NCBI
Rnor_6.0113,472,694 - 13,705,364 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589824   ⟹   XP_017445313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,775,874 - 15,008,327 (+)NCBI
mRatBN7.2112,956,525 - 13,188,580 (+)NCBI
Rnor_6.0113,472,695 - 13,705,364 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098789   ⟹   XP_038954717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,964,666 - 15,008,327 (+)NCBI
mRatBN7.2113,144,912 - 13,188,580 (+)NCBI
RefSeq Acc Id: XM_063262290   ⟹   XP_063118360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,938,858 - 15,008,327 (+)NCBI
RefSeq Acc Id: XM_063262298   ⟹   XP_063118368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,899,493 - 15,008,327 (+)NCBI
RefSeq Acc Id: XM_063262305   ⟹   XP_063118375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,896,875 - 15,008,327 (+)NCBI
RefSeq Acc Id: XM_063262306   ⟹   XP_063118376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,875,510 - 15,008,327 (+)NCBI
RefSeq Acc Id: XM_063262308   ⟹   XP_063118378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,847,861 - 15,008,327 (+)NCBI
RefSeq Acc Id: XP_002728672   ⟸   XM_002728626
- Peptide Label: isoform X4
- UniProtKB: A6JPA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_002728671   ⟸   XM_002728625
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GKL0 (UniProtKB/TrEMBL),   A6JPA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227730   ⟸   XM_006227668
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JZL4 (UniProtKB/TrEMBL),   A6JPA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445312   ⟸   XM_017589823
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ASC1 (UniProtKB/TrEMBL),   A6JPA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445313   ⟸   XM_017589824
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y5X6 (UniProtKB/TrEMBL),   A6JPA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071093   ⟸   ENSRNOT00000079250
RefSeq Acc Id: XP_038954717   ⟸   XM_039098789
- Peptide Label: isoform X8
RefSeq Acc Id: ENSRNOP00000097262   ⟸   ENSRNOT00000098675
RefSeq Acc Id: ENSRNOP00000077518   ⟸   ENSRNOT00000102189
RefSeq Acc Id: ENSRNOP00000094113   ⟸   ENSRNOT00000115660
RefSeq Acc Id: XP_063118378   ⟸   XM_063262308
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063118376   ⟸   XM_063262306
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063118375   ⟸   XM_063262305
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063118368   ⟸   XM_063262298
- Peptide Label: isoform X7
RefSeq Acc Id: NP_001414775   ⟸   NM_001427846
RefSeq Acc Id: XP_063118360   ⟸   XM_063262290
- Peptide Label: isoform X6

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZL4-F1-model_v2 AlphaFold A0A0G2JZL4 1-1575 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689514
Promoter ID:EPDNEW_R31
Type:initiation region
Name:Nhsl1_1
Description:NHS-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0113,595,420 - 13,595,480EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308124 AgrOrtholog
BioCyc Gene G2FUF-62265 BioCyc
Ensembl Genes ENSRNOG00000060603 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079250.2 UniProtKB/TrEMBL
  ENSRNOT00000098675.1 UniProtKB/TrEMBL
  ENSRNOT00000102189.1 UniProtKB/TrEMBL
  ENSRNOT00000115660.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.340 UniProtKB/TrEMBL
InterPro NHS_fam UniProtKB/TrEMBL
KEGG Report rno:308631 UniProtKB/TrEMBL
NCBI Gene 308631 ENTREZGENE
PANTHER NANCE-HORAN SYNDROME PROTEIN UniProtKB/TrEMBL
  NHS-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam NHS UniProtKB/TrEMBL
PhenoGen Nhsl1 PhenoGen
RatGTEx ENSRNOG00000060603 RatGTEx
UniProt A0A0G2JZL4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y5X6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ASC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKL0 ENTREZGENE, UniProtKB/TrEMBL
  A6JPA2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-10 Nhsl1  NHS-like 1  RGD1308124  similar to KIAA1357 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1308124  similar to KIAA1357 protein   RGD1308124_predicted  similar to KIAA1357 protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308124_predicted  similar to KIAA1357 protein (predicted)  LOC308631_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC308631_predicted  similar to KIAA1357 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL