Nhsl1 (NHS like 1) - Rat Genome Database

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Gene: Nhsl1 (NHS like 1) Chinchilla lanigera
Analyze
Symbol: Nhsl1
Name: NHS like 1
RGD ID: 8820507
Description: ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NHS-like 1; NHS-like protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543621,030,615 - 21,156,154 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,937,231 - 21,157,254 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nhsl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543621,030,615 - 21,156,154 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,937,231 - 21,157,254 (+)NCBIChiLan1.0ChiLan1.0
NHSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,422,043 - 138,693,212 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,422,043 - 138,692,571 (-)EnsemblGRCh38hg38GRCh38
GRCh376138,743,180 - 138,893,706 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366138,782,730 - 138,862,324 (-)NCBINCBI36Build 36hg18NCBI36
Celera6139,483,315 - 139,633,785 (-)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,304,593 - 136,455,165 (-)NCBIHuRef
CHM1_16139,005,817 - 139,156,712 (-)NCBICHM1_1
T2T-CHM13v2.06139,610,527 - 139,881,772 (-)NCBIT2T-CHM13v2.0
Nhsl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391018,193,419 - 18,409,640 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1018,194,733 - 18,409,640 (+)EnsemblGRCm39 Ensembl
GRCm381018,317,665 - 18,533,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,318,985 - 18,533,892 (+)EnsemblGRCm38mm10GRCm38
MGSCv371018,127,481 - 18,253,698 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361018,216,306 - 18,223,308 (+)NCBIMGSCv36mm8
Celera1018,313,288 - 18,439,830 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.65NCBI
Nhsl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,775,874 - 15,008,327 (+)NCBIGRCr8
mRatBN7.2112,956,525 - 13,188,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,956,021 - 13,187,547 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0113,472,694 - 13,705,364 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,595,295 - 13,705,396 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0115,159,938 - 15,389,483 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,479,076 - 13,620,447 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1113,479,137 - 13,620,300 (+)NCBI
Celera111,410,484 - 11,640,940 (+)NCBICelera
Cytogenetic Map1p12NCBI
NHSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,384,558 - 158,659,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,282,155 - 156,556,894 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,177,592 - 136,327,633 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,264,366 - 140,414,486 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,264,366 - 140,414,486 (-)Ensemblpanpan1.1panPan2
NHSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1130,738,366 - 30,872,559 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl130,740,449 - 30,871,878 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha131,617,175 - 31,750,409 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0130,901,606 - 31,036,079 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl130,879,539 - 31,139,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1130,780,128 - 30,913,958 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0130,662,212 - 30,796,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0130,970,955 - 31,105,271 (-)NCBIUU_Cfam_GSD_1.0
Nhsl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946125,794,488 - 125,920,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365605,573,459 - 5,699,587 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365605,574,469 - 5,699,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NHSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,852,032 - 25,987,833 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,663,554 - 25,988,106 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,985,373 - 29,125,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NHSL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,732,987 - 34,977,281 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,900,833 - 34,977,655 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660406,907,880 - 7,144,753 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nhsl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,349,906 - 15,485,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475315,349,238 - 15,483,223 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015875   ⟹   ENSCLAP00000015712
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543621,030,615 - 21,156,154 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000015876   ⟹   ENSCLAP00000015713
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543621,030,615 - 21,156,154 (+)Ensembl
RefSeq Acc Id: XM_005389272   ⟹   XP_005389329
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543621,030,431 - 21,157,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005389273   ⟹   XP_005389330
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543621,030,431 - 21,157,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005389275   ⟹   XP_005389332
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543621,089,263 - 21,157,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516650   ⟹   XP_013372104
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543621,030,436 - 21,157,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516651   ⟹   XP_013372105
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,937,231 - 21,157,254 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005389329   ⟸   XM_005389272
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VPS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389330   ⟸   XM_005389273
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VJL1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389332   ⟸   XM_005389275
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013372105   ⟸   XM_013516651
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013372104   ⟸   XM_013516650
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VPS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015713   ⟸   ENSCLAT00000015876
RefSeq Acc Id: ENSCLAP00000015712   ⟸   ENSCLAT00000015875


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010800 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015875 ENTREZGENE
  ENSCLAT00000015875.1 UniProtKB/TrEMBL
  ENSCLAT00000015876 ENTREZGENE
  ENSCLAT00000015876.1 UniProtKB/TrEMBL
InterPro NHS_fam UniProtKB/TrEMBL
NCBI Gene Nhsl1 ENTREZGENE
PANTHER NANCE-HORAN SYNDROME PROTEIN UniProtKB/TrEMBL
  NHS-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam NHS UniProtKB/TrEMBL
UniProt A0A8C2VJL1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VPS3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Nhsl1  NHS like 1    NHS-like 1  Symbol and/or name change 5135510 APPROVED