NHSL1 (NHS like 1) - Rat Genome Database

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Gene: NHSL1 (NHS like 1) Sus scrofa
Analyze
Symbol: NHSL1
Name: NHS like 1
RGD ID: 13938699
Description: INVOLVED IN cell differentiation (inferred); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NHS-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,852,032 - 25,987,833 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,663,554 - 25,988,106 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,985,373 - 29,125,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NHSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,852,032 - 25,987,833 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,663,554 - 25,988,106 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,985,373 - 29,125,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NHSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,422,043 - 138,693,212 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,422,043 - 138,692,571 (-)EnsemblGRCh38hg38GRCh38
GRCh376138,743,180 - 138,893,706 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366138,782,730 - 138,862,324 (-)NCBINCBI36Build 36hg18NCBI36
Celera6139,483,315 - 139,633,785 (-)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,304,593 - 136,455,165 (-)NCBIHuRef
CHM1_16139,005,817 - 139,156,712 (-)NCBICHM1_1
T2T-CHM13v2.06139,610,527 - 139,881,772 (-)NCBIT2T-CHM13v2.0
Nhsl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391018,193,419 - 18,409,640 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1018,194,733 - 18,409,640 (+)EnsemblGRCm39 Ensembl
GRCm381018,317,665 - 18,533,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,318,985 - 18,533,892 (+)EnsemblGRCm38mm10GRCm38
MGSCv371018,127,481 - 18,253,698 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361018,216,306 - 18,223,308 (+)NCBIMGSCv36mm8
Celera1018,313,288 - 18,439,830 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.65NCBI
Nhsl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,775,874 - 15,008,327 (+)NCBIGRCr8
mRatBN7.2112,956,525 - 13,188,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,956,021 - 13,187,547 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0113,472,694 - 13,705,364 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,595,295 - 13,705,396 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0115,159,938 - 15,389,483 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,479,076 - 13,620,447 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1113,479,137 - 13,620,300 (+)NCBI
Celera111,410,484 - 11,640,940 (+)NCBICelera
Cytogenetic Map1p12NCBI
Nhsl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543621,030,615 - 21,156,154 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,937,231 - 21,157,254 (+)NCBIChiLan1.0ChiLan1.0
NHSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,384,558 - 158,659,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,282,155 - 156,556,894 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,177,592 - 136,327,633 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,264,366 - 140,414,486 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,264,366 - 140,414,486 (-)Ensemblpanpan1.1panPan2
NHSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1130,738,366 - 30,872,559 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl130,740,449 - 30,871,878 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha131,617,175 - 31,750,409 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0130,901,606 - 31,036,079 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl130,879,539 - 31,139,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1130,780,128 - 30,913,958 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0130,662,212 - 30,796,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0130,970,955 - 31,105,271 (-)NCBIUU_Cfam_GSD_1.0
Nhsl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946125,794,488 - 125,920,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365605,573,459 - 5,699,587 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365605,574,469 - 5,699,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NHSL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,732,987 - 34,977,281 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,900,833 - 34,977,655 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660406,907,880 - 7,144,753 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nhsl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,349,906 - 15,485,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475315,349,238 - 15,483,223 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NHSL1
10813 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004585   ⟹   ENSSSCP00000004482
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,736,370 - 25,988,645 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000037006   ⟹   ENSSSCP00000041238
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,920,004 - 25,988,621 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043821   ⟹   ENSSSCP00000053775
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,879,088 - 25,987,836 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047086   ⟹   ENSSSCP00000056813
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,852,032 - 25,987,833 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000063827   ⟹   ENSSSCP00000046314
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,736,370 - 25,988,621 (+)Ensembl
RefSeq Acc Id: XM_005659173   ⟹   XP_005659230
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,846,774 - 25,988,106 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659175   ⟹   XP_005659232
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,846,774 - 25,988,106 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659176   ⟹   XP_005659233
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,918,226 - 25,988,106 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087394   ⟹   XP_020943053
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,876,511 - 25,988,106 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087398   ⟹   XP_020943057
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,918,226 - 25,988,106 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087404   ⟹   XP_020943063
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,876,511 - 25,988,106 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087406   ⟹   XP_020943065
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,852,866 - 25,988,106 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087407   ⟹   XP_020943066
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,663,554 - 25,988,058 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020943066   ⟸   XM_021087407
- Peptide Label: isoform X7
- UniProtKB: A0A480VV41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659230   ⟸   XM_005659173
- Peptide Label: isoform X1
- UniProtKB: A0A480TD50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659232   ⟸   XM_005659175
- Peptide Label: isoform X2
- UniProtKB: A0A287BJM9 (UniProtKB/TrEMBL),   A0A480N5I2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943065   ⟸   XM_021087406
- Peptide Label: isoform X7
- UniProtKB: A0A480VV41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943053   ⟸   XM_021087394
- Peptide Label: isoform X4
- UniProtKB: A0A8D1UCJ7 (UniProtKB/TrEMBL),   A0A8D1XKA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943063   ⟸   XM_021087404
- Peptide Label: isoform X6
- UniProtKB: A0A480VV41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659233   ⟸   XM_005659176
- Peptide Label: isoform X3
- UniProtKB: A0A8D1S121 (UniProtKB/TrEMBL),   A0A8D1XJG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943057   ⟸   XM_021087398
- Peptide Label: isoform X5
- UniProtKB: A0A8D1V0J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000041238   ⟸   ENSSSCT00000037006
RefSeq Acc Id: ENSSSCP00000056813   ⟸   ENSSSCT00000047086
RefSeq Acc Id: ENSSSCP00000053775   ⟸   ENSSSCT00000043821
RefSeq Acc Id: ENSSSCP00000004482   ⟸   ENSSSCT00000004585
RefSeq Acc Id: ENSSSCP00000046314   ⟸   ENSSSCT00000063827


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035058059 UniProtKB/TrEMBL
  ENSSSCG00055027583 UniProtKB/TrEMBL
  ENSSSCG00060029687 UniProtKB/TrEMBL
  ENSSSCG00065012855 UniProtKB/TrEMBL
  ENSSSCG00070025300 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000047086 ENTREZGENE
  ENSSSCT00000047086.2 UniProtKB/TrEMBL
  ENSSSCT00035077677.1 UniProtKB/TrEMBL
  ENSSSCT00035077682.1 UniProtKB/TrEMBL
  ENSSSCT00055054537.1 UniProtKB/TrEMBL
  ENSSSCT00055054572.1 UniProtKB/TrEMBL
  ENSSSCT00060040105.1 UniProtKB/TrEMBL
  ENSSSCT00065017116.1 UniProtKB/TrEMBL
  ENSSSCT00065017122.1 UniProtKB/TrEMBL
  ENSSSCT00070050586.1 UniProtKB/TrEMBL
InterPro NHS_fam UniProtKB/TrEMBL
NCBI Gene NHSL1 ENTREZGENE
PANTHER NANCE-HORAN SYNDROME PROTEIN UniProtKB/TrEMBL
  NHS-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam NHS UniProtKB/TrEMBL
UniProt A0A287BJM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A480N5I2 ENTREZGENE, UniProtKB/TrEMBL
  A0A480TD50 ENTREZGENE, UniProtKB/TrEMBL
  A0A480VV41 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VLR2_PIG UniProtKB/TrEMBL
  A0A8D1S121 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UCJ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1V0J5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XJG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XKA5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90739 ENTREZGENE