Nhsl1 (NHS like 1) - Rat Genome Database

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Gene: Nhsl1 (NHS like 1) Heterocephalus glaber
Analyze
Symbol: Nhsl1
Name: NHS like 1
RGD ID: 18925253
Description: INVOLVED IN cell differentiation (inferred); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NHS-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,349,906 - 15,485,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475315,349,238 - 15,483,223 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nhsl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,349,906 - 15,485,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475315,349,238 - 15,483,223 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NHSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,422,043 - 138,693,212 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,422,043 - 138,692,571 (-)EnsemblGRCh38hg38GRCh38
GRCh376138,743,180 - 138,893,706 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366138,782,730 - 138,862,324 (-)NCBINCBI36Build 36hg18NCBI36
Celera6139,483,315 - 139,633,785 (-)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,304,593 - 136,455,165 (-)NCBIHuRef
CHM1_16139,005,817 - 139,156,712 (-)NCBICHM1_1
T2T-CHM13v2.06139,610,527 - 139,881,772 (-)NCBIT2T-CHM13v2.0
Nhsl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391018,193,419 - 18,409,640 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1018,194,733 - 18,409,640 (+)EnsemblGRCm39 Ensembl
GRCm381018,317,665 - 18,533,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,318,985 - 18,533,892 (+)EnsemblGRCm38mm10GRCm38
MGSCv371018,127,481 - 18,253,698 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361018,216,306 - 18,223,308 (+)NCBIMGSCv36mm8
Celera1018,313,288 - 18,439,830 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.65NCBI
Nhsl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,775,874 - 15,008,327 (+)NCBIGRCr8
mRatBN7.2112,956,525 - 13,188,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,956,021 - 13,187,547 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0113,472,694 - 13,705,364 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,595,295 - 13,705,396 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0115,159,938 - 15,389,483 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,479,076 - 13,620,447 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1113,479,137 - 13,620,300 (+)NCBI
Celera111,410,484 - 11,640,940 (+)NCBICelera
Cytogenetic Map1p12NCBI
Nhsl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543621,030,615 - 21,156,154 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,937,231 - 21,157,254 (+)NCBIChiLan1.0ChiLan1.0
NHSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,384,558 - 158,659,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,282,155 - 156,556,894 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,177,592 - 136,327,633 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,264,366 - 140,414,486 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,264,366 - 140,414,486 (-)Ensemblpanpan1.1panPan2
NHSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1130,738,366 - 30,872,559 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl130,740,449 - 30,871,878 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha131,617,175 - 31,750,409 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0130,901,606 - 31,036,079 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl130,879,539 - 31,139,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1130,780,128 - 30,913,958 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0130,662,212 - 30,796,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0130,970,955 - 31,105,271 (-)NCBIUU_Cfam_GSD_1.0
Nhsl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946125,794,488 - 125,920,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365605,573,459 - 5,699,587 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365605,574,469 - 5,699,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NHSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,852,032 - 25,987,833 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,663,554 - 25,988,106 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,985,373 - 29,125,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NHSL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,732,987 - 34,977,281 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,900,833 - 34,977,655 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660406,907,880 - 7,144,753 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000022237   ⟹   ENSHGLP00000022027
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475315,349,906 - 15,485,320 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000022238   ⟹   ENSHGLP00000022028
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475315,349,906 - 15,485,320 (+)Ensembl
RefSeq Acc Id: XM_004846070   ⟹   XP_004846127
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,349,246 - 15,483,223 (+)NCBI
RefSeq Acc Id: XM_004846071   ⟹   XP_004846128
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,349,238 - 15,483,223 (+)NCBI
RefSeq Acc Id: XM_004846072   ⟹   XP_004846129
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,402,167 - 15,483,223 (+)NCBI
RefSeq Acc Id: XM_004846073   ⟹   XP_004846130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,412,736 - 15,483,223 (+)NCBI
RefSeq Acc Id: XM_021259351   ⟹   XP_021115010
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,415,400 - 15,483,223 (+)NCBI
RefSeq Acc Id: XM_021259352   ⟹   XP_021115011
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,419,747 - 15,483,223 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004846128   ⟸   XM_004846071
- Peptide Label: isoform X2
- UniProtKB: G5AUD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004846127   ⟸   XM_004846070
- Peptide Label: isoform X1
- UniProtKB: G5AUD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004846129   ⟸   XM_004846072
- Peptide Label: isoform X3
- UniProtKB: G5AUD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004846130   ⟸   XM_004846073
- Peptide Label: isoform X4
- UniProtKB: G5AUD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115010   ⟸   XM_021259351
- Peptide Label: isoform X5
- UniProtKB: G5AUD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115011   ⟸   XM_021259352
- Peptide Label: isoform X6
- UniProtKB: G5AUD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000022028   ⟸   ENSHGLT00000022238
RefSeq Acc Id: ENSHGLP00000022027   ⟸   ENSHGLT00000022237


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015715 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000022237 ENTREZGENE
  ENSHGLT00000022238 ENTREZGENE
InterPro NHS_fam UniProtKB/TrEMBL
NCBI Gene Nhsl1 ENTREZGENE
PANTHER NANCE-HORAN SYNDROME PROTEIN UniProtKB/TrEMBL
  NHS-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam NHS UniProtKB/TrEMBL
UniProt G5AUD0 ENTREZGENE, UniProtKB/TrEMBL