Dctn6 (dynactin subunit 6) - Rat Genome Database

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Gene: Dctn6 (dynactin subunit 6) Rattus norvegicus
Analyze
Symbol: Dctn6
Name: dynactin subunit 6
RGD ID: 1307549
Description: Predicted to enable dynein complex binding activity. Predicted to be involved in mitotic spindle organization. Predicted to be located in centrosome. Predicted to be part of dynactin complex. Orthologous to human DCTN6 (dynactin subunit 6); PARTICIPATES IN mitochondria transport pathway; vasopressin signaling pathway via receptor type 2; INTERACTS WITH 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: dynactin 6; LOC290798
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,780,759 - 64,799,766 (+)NCBIGRCr8
mRatBN7.21658,077,595 - 58,096,604 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,077,585 - 58,096,968 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1663,417,996 - 63,437,002 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,831,653 - 66,850,659 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,052,263 - 62,071,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,795,544 - 61,814,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,795,432 - 61,814,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,461,253 - 61,480,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41661,805,057 - 61,824,399 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11661,805,185 - 61,824,467 (+)NCBI
Celera1656,115,632 - 56,134,228 (+)NCBICelera
Cytogenetic Map16q12.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (ISO)
dynactin complex  (IBA,ISO)
kinetochore  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. Dynactin. Schroer TA, Annu Rev Cell Dev Biol. 2004;20:759-79.
Additional References at PubMed
PMID:10525537   PMID:21399614   PMID:23455152  


Genomics

Comparative Map Data
Dctn6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,780,759 - 64,799,766 (+)NCBIGRCr8
mRatBN7.21658,077,595 - 58,096,604 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,077,585 - 58,096,968 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1663,417,996 - 63,437,002 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,831,653 - 66,850,659 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,052,263 - 62,071,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,795,544 - 61,814,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,795,432 - 61,814,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,461,253 - 61,480,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41661,805,057 - 61,824,399 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11661,805,185 - 61,824,467 (+)NCBI
Celera1656,115,632 - 56,134,228 (+)NCBICelera
Cytogenetic Map16q12.2NCBI
DCTN6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,156,369 - 30,183,639 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl830,156,319 - 30,183,639 (+)EnsemblGRCh38hg38GRCh38
GRCh37830,013,885 - 30,041,155 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,133,355 - 30,160,602 (+)NCBINCBI36Build 36hg18NCBI36
Build 34830,133,354 - 30,160,601NCBI
Celera828,973,101 - 29,000,347 (+)NCBICelera
Cytogenetic Map8p12NCBI
HuRef828,558,549 - 28,585,889 (+)NCBIHuRef
CHM1_1830,216,121 - 30,243,455 (+)NCBICHM1_1
T2T-CHM13v2.0830,435,240 - 30,462,514 (+)NCBIT2T-CHM13v2.0
Dctn6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,557,574 - 34,575,866 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,557,574 - 34,575,950 (-)EnsemblGRCm39 Ensembl
GRCm38834,090,420 - 34,108,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl834,090,420 - 34,108,796 (-)EnsemblGRCm38mm10GRCm38
MGSCv37835,153,477 - 35,171,565 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36835,558,941 - 35,576,960 (-)NCBIMGSCv36mm8
Celera836,706,339 - 36,726,929 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.9NCBI
Dctn6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554636,631,654 - 6,645,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554636,612,124 - 6,645,962 (+)NCBIChiLan1.0ChiLan1.0
DCTN6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2748,717,653 - 48,743,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1824,433,092 - 24,458,676 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0829,457,426 - 29,485,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1826,647,765 - 26,672,466 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl826,647,944 - 26,673,455 (+)Ensemblpanpan1.1panPan2
DCTN6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11634,119,908 - 34,144,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1634,120,046 - 34,144,632 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1634,582,465 - 34,607,208 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01636,149,841 - 36,174,598 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1636,149,988 - 36,175,955 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11634,248,295 - 34,273,066 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,817,304 - 34,841,846 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01634,938,291 - 34,962,353 (-)NCBIUU_Cfam_GSD_1.0
Dctn6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494357,274,146 - 57,293,925 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493679269,125 - 90,110 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493679269,893 - 89,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCTN6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,875,850 - 54,896,148 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11554,876,213 - 54,895,883 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DCTN6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,258,470 - 28,286,654 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,258,480 - 28,325,782 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605213,822,568 - 13,849,605 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dctn6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248396,782,341 - 6,818,653 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248396,782,284 - 6,818,584 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dctn6
55 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:35
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000017756
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat

Markers in Region
RH144211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,084,708 - 58,084,808 (+)MAPPERmRatBN7.2
Rnor_6.01661,802,657 - 61,802,756NCBIRnor6.0
Rnor_5.01661,468,366 - 61,468,465UniSTSRnor5.0
RGSC_v3.41661,812,170 - 61,812,269UniSTSRGSC3.4
Celera1656,122,745 - 56,122,844UniSTS
RH 3.4 Map16541.4UniSTS
Cytogenetic Map16q12.3UniSTS
BF403099  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,084,575 - 58,084,756 (+)MAPPERmRatBN7.2
Rnor_6.01661,802,524 - 61,802,704NCBIRnor6.0
Rnor_5.01661,468,233 - 61,468,413UniSTSRnor5.0
RGSC_v3.41661,812,037 - 61,812,217UniSTSRGSC3.4
Celera1656,122,612 - 56,122,792UniSTS
RH 3.4 Map16541.9UniSTS
Cytogenetic Map16q12.3UniSTS
RH140990  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,096,412 - 58,096,603 (+)MAPPERmRatBN7.2
Rnor_6.01661,814,543 - 61,814,733NCBIRnor6.0
Rnor_5.01661,480,164 - 61,480,354UniSTSRnor5.0
RGSC_v3.41661,824,208 - 61,824,398UniSTSRGSC3.4
Celera1656,134,037 - 56,134,227UniSTS
RH 3.4 Map16542.31UniSTS
Cytogenetic Map16q12.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000017756   ⟹   ENSRNOP00000017756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,077,585 - 58,096,968 (+)Ensembl
Rnor_6.0 Ensembl1661,795,432 - 61,814,733 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107106   ⟹   ENSRNOP00000076456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,077,884 - 58,096,968 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111946   ⟹   ENSRNOP00000086656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,082,328 - 58,096,968 (+)Ensembl
RefSeq Acc Id: NM_001106085   ⟹   NP_001099555
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,780,759 - 64,799,766 (+)NCBI
mRatBN7.21658,077,595 - 58,096,604 (+)NCBI
Rnor_6.01661,795,544 - 61,814,734 (+)NCBI
Rnor_5.01661,461,253 - 61,480,355 (+)NCBI
RGSC_v3.41661,805,057 - 61,824,399 (+)RGD
Celera1656,115,632 - 56,134,228 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099555 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM09168 (Get FASTA)   NCBI Sequence Viewer  
  EDM09169 (Get FASTA)   NCBI Sequence Viewer  
  EDM09170 (Get FASTA)   NCBI Sequence Viewer  
  EDM09171 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017756.5
  ENSRNOP00000076456.1
  ENSRNOP00000086656.1
RefSeq Acc Id: NP_001099555   ⟸   NM_001106085
- UniProtKB: D4ADD8 (UniProtKB/TrEMBL),   A6IVQ2 (UniProtKB/TrEMBL),   A0A8I6A6N2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017756   ⟸   ENSRNOT00000017756
Ensembl Acc Id: ENSRNOP00000086656   ⟸   ENSRNOT00000111946
Ensembl Acc Id: ENSRNOP00000076456   ⟸   ENSRNOT00000107106

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ADD8-F1-model_v2 AlphaFold D4ADD8 1-190 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700138
Promoter ID:EPDNEW_R10662
Type:initiation region
Name:Dctn6_1
Description:dynactin subunit 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01661,795,523 - 61,795,583EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307549 AgrOrtholog
BioCyc Gene G2FUF-11138 BioCyc
Ensembl Genes ENSRNOG00000013254 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017756.8 UniProtKB/TrEMBL
  ENSRNOT00000107106.1 UniProtKB/TrEMBL
  ENSRNOT00000111946.1 UniProtKB/TrEMBL
Gene3D-CATH Hexapeptide repeat proteins UniProtKB/TrEMBL
InterPro DCTN6 UniProtKB/TrEMBL
  Trimer_LpxA-like UniProtKB/TrEMBL
KEGG Report rno:290798 UniProtKB/TrEMBL
NCBI Gene 290798 ENTREZGENE
PANTHER DYNACTIN SUBUNIT 6 UniProtKB/TrEMBL
  PTHR13072 UniProtKB/TrEMBL
PhenoGen Dctn6 PhenoGen
RatGTEx ENSRNOG00000013254 RatGTEx
Superfamily-SCOP Trimer_LpxA_like UniProtKB/TrEMBL
UniProt A0A8I5Y4I3_RAT UniProtKB/TrEMBL
  A0A8I6A6N2 ENTREZGENE, UniProtKB/TrEMBL
  A6IVQ2 ENTREZGENE, UniProtKB/TrEMBL
  D4ADD8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Dctn6  dynactin subunit 6  Dctn6  dynactin 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Dctn6  dynactin 6   Dctn6_predicted  dynactin 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Dctn6_predicted  dynactin 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED