Nubpl (NUBP iron-sulfur cluster assembly factor, mitochondrial) - Rat Genome Database

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Gene: Nubpl (NUBP iron-sulfur cluster assembly factor, mitochondrial) Rattus norvegicus
Analyze
Symbol: Nubpl
Name: NUBP iron-sulfur cluster assembly factor, mitochondrial (Ensembl:NUBP iron-sulfur cluster assembly factor like)
RGD ID: 1307232
Description: Predicted to enable 4 iron, 4 sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly and mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 21. Orthologous to human NUBPL (NUBP iron-sulfur cluster assembly factor, mitochondrial); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: iron-sulfur cluster transfer protein NUBPL; iron-sulfur protein NUBPL; LOC299008; NUBP iron-sulfur cluster assembly factor like; nucleotide binding protein-like; nucleotide-binding protein-like; RGD1307232; similar to hypothetical protein FLJ12660
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,294,609 - 75,516,603 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl675,294,632 - 75,516,601 (+)EnsemblGRCr8
mRatBN7.2669,559,278 - 69,781,254 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,559,291 - 69,781,253 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx669,990,443 - 70,205,300 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0670,297,085 - 70,511,949 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0669,736,622 - 69,951,482 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0672,891,758 - 73,147,837 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,891,725 - 73,148,536 (+)Ensemblrn6Rnor6.0
Rnor_5.0682,557,115 - 82,709,215 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0682,453,631 - 82,517,904 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4672,264,459 - 72,306,567 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera668,435,325 - 68,646,422 (+)NCBICelera
RGSC_v3.1672,267,584 - 72,479,338 (+)NCBI
Cytogenetic Map6q23NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
17beta-estradiol  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
7,12-dimethyltetraphene  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
disodium selenite  (ISO)
endosulfan  (EXP)
flutamide  (EXP)
fulvestrant  (ISO)
gallic acid  (ISO)
glafenine  (EXP)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
nitrofen  (EXP)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
pirinixic acid  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrial matrix  (IEA)
mitochondrion  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Iron-sulfur cluster biogenesis in mammalian cells: New insights into the molecular mechanisms of cluster delivery. Maio N and Rouault TA, Biochim Biophys Acta. 2015 Jun;1853(6):1493-512. doi: 10.1016/j.bbamcr.2014.09.009. Epub 2014 Sep 19.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:19752196  


Genomics

Comparative Map Data
Nubpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,294,609 - 75,516,603 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl675,294,632 - 75,516,601 (+)EnsemblGRCr8
mRatBN7.2669,559,278 - 69,781,254 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,559,291 - 69,781,253 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx669,990,443 - 70,205,300 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0670,297,085 - 70,511,949 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0669,736,622 - 69,951,482 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0672,891,758 - 73,147,837 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,891,725 - 73,148,536 (+)Ensemblrn6Rnor6.0
Rnor_5.0682,557,115 - 82,709,215 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0682,453,631 - 82,517,904 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4672,264,459 - 72,306,567 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera668,435,325 - 68,646,422 (+)NCBICelera
RGSC_v3.1672,267,584 - 72,479,338 (+)NCBI
Cytogenetic Map6q23NCBI
NUBPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381431,561,404 - 31,861,224 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1431,489,956 - 31,861,226 (+)Ensemblhg38GRCh38
GRCh371432,030,610 - 32,330,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361431,100,342 - 31,400,181 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341431,100,428 - 31,399,259NCBI
Celera1411,895,904 - 12,195,785 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef1412,147,896 - 12,447,827 (+)NCBIHuRef
CHM1_11432,029,883 - 32,329,829 (+)NCBICHM1_1
T2T-CHM13v2.01425,758,636 - 26,058,537 (+)NCBIT2T-CHM13v2.0
Nubpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,144,529 - 52,357,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,144,520 - 52,359,527 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381252,097,746 - 52,310,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1252,097,737 - 52,312,744 (+)Ensemblmm10GRCm38
MGSCv371253,198,733 - 53,411,946 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361253,019,357 - 53,234,357 (+)NCBIMGSCv36mm8
Celera1253,404,089 - 53,607,597 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1222.11NCBI
Nubpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540928,872,189 - 29,073,206 (-)Ensembl
ChiLan1.0NW_00495540928,873,609 - 29,073,196 (-)NCBIChiLan1.0ChiLan1.0
NUBPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21532,890,880 - 33,180,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11432,107,388 - 32,397,543 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01412,338,341 - 12,628,346 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11430,534,997 - 30,822,227 (+)NCBIPanPan1.1PanPan1.1panPan2
NUBPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1810,796,462 - 11,026,804 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl810,796,459 - 11,090,920 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha810,659,000 - 10,889,204 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0810,898,957 - 11,129,569 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl810,898,349 - 11,129,522 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1810,580,802 - 10,814,041 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0810,664,161 - 10,894,603 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0810,942,563 - 11,173,068 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nubpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864042,635,534 - 42,858,568 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364946,141,476 - 6,363,830 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364946,141,444 - 6,365,537 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUBPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl767,784,639 - 68,028,552 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1767,785,652 - 68,028,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2772,498,664 - 72,573,328 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUBPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl248,425,239 - 8,699,269 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Nubpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624820567,217 - 791,817 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624820562,180 - 767,434 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nubpl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1765,536,862 - 65,749,428 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nubpl
1137 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000038074
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat

Markers in Region
D6Rat199  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8675,510,209 - 75,510,420 (+)Marker Load Pipeline
mRatBN7.2669,774,860 - 69,775,071 (+)MAPPERmRatBN7.2
Rnor_6.0673,141,444 - 73,141,654NCBIRnor6.0
Rnor_5.0682,702,823 - 82,703,033UniSTSRnor5.0
RGSC_v3.4672,469,819 - 72,470,030RGDRGSC3.4
RGSC_v3.4672,469,820 - 72,470,030UniSTSRGSC3.4
Celera668,640,034 - 68,640,248UniSTS
RGSC_v3.1672,472,945 - 72,473,156RGD
SHRSP x BN Map644.5799UniSTS
SHRSP x BN Map644.5799RGD
Cytogenetic Map6q23UniSTS
MARC_7649-7650:996688053:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2669,600,566 - 69,600,797 (+)MAPPERmRatBN7.2
mRatBN7.27133,244,430 - 133,245,161 (+)MAPPERmRatBN7.2
Rnor_6.07143,717,527 - 143,718,257NCBIRnor6.0
Rnor_6.0672,933,904 - 72,934,134NCBIRnor6.0
Rnor_5.07141,514,111 - 141,514,841UniSTSRnor5.0
Rnor_5.0682,494,665 - 82,494,895UniSTSRnor5.0
RGSC_v3.4672,305,758 - 72,305,988UniSTSRGSC3.4
RGSC_v3.47140,852,606 - 140,853,336UniSTSRGSC3.4
Celera7129,679,761 - 129,680,491UniSTS
Celera668,476,527 - 68,476,757UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map6q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 89 59 6 353 189 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001185025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BF282469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP486352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO399813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000038074   ⟹   ENSRNOP00000029049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl675,294,632 - 75,516,601 (+)Ensembl
mRatBN7.2 Ensembl669,559,291 - 69,781,252 (+)Ensembl
Rnor_6.0 Ensembl672,891,725 - 73,148,536 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097874   ⟹   ENSRNOP00000097251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl675,294,632 - 75,516,601 (+)Ensembl
mRatBN7.2 Ensembl669,559,550 - 69,781,253 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107636   ⟹   ENSRNOP00000087990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl669,559,291 - 69,771,738 (+)Ensembl
RefSeq Acc Id: NM_001185025   ⟹   NP_001171954
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,294,652 - 75,516,602 (+)NCBI
mRatBN7.2669,559,320 - 69,781,253 (+)NCBI
Rnor_6.0672,891,758 - 73,147,836 (+)NCBI
Rnor_5.0682,453,631 - 82,517,904 (+)NCBI
Rnor_5.0682,557,115 - 82,709,215 (+)NCBI
Celera668,435,325 - 68,646,422 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764655   ⟹   XP_008762877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,294,609 - 75,516,603 (+)NCBI
mRatBN7.2669,559,278 - 69,781,254 (+)NCBI
Rnor_6.0672,891,795 - 73,147,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111969   ⟹   XP_038967897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,294,609 - 75,503,055 (+)NCBI
mRatBN7.2669,559,278 - 69,767,706 (+)NCBI
RefSeq Acc Id: XM_039111970   ⟹   XP_038967898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,294,609 - 75,381,042 (+)NCBI
mRatBN7.2669,559,278 - 69,645,716 (+)NCBI
RefSeq Acc Id: XM_063261668   ⟹   XP_063117738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,294,629 - 75,503,055 (+)NCBI
RefSeq Acc Id: XM_063261669   ⟹   XP_063117739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,295,237 - 75,516,603 (+)NCBI
RefSeq Acc Id: XM_063261670   ⟹   XP_063117740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,294,609 - 75,414,796 (+)NCBI
RefSeq Acc Id: XM_063261671   ⟹   XP_063117741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,294,609 - 75,329,969 (+)NCBI
RefSeq Acc Id: XM_063261672   ⟹   XP_063117742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,382,361 - 75,516,603 (+)NCBI
RefSeq Acc Id: NP_001171954   ⟸   NM_001185025
- Peptide Label: precursor
- UniProtKB: D3ZFQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762877   ⟸   XM_008764655
- Peptide Label: isoform X8
- UniProtKB: A0A8I6ARC8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000029049   ⟸   ENSRNOT00000038074
RefSeq Acc Id: XP_038967897   ⟸   XM_039111969
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038967898   ⟸   XM_039111970
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000087990   ⟸   ENSRNOT00000107636
Ensembl Acc Id: ENSRNOP00000097251   ⟸   ENSRNOT00000097874
RefSeq Acc Id: XP_063117740   ⟸   XM_063261670
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063117741   ⟸   XM_063261671
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063117738   ⟸   XM_063261668
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117739   ⟸   XM_063261669
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063117742   ⟸   XM_063261672
- Peptide Label: isoform X7
- UniProtKB: A6HBI4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFQ3-F1-model_v2 AlphaFold D3ZFQ3 1-319 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694592
Promoter ID:EPDNEW_R5116
Type:initiation region
Name:Nubpl_1
Description:nucleotide binding protein-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0672,891,727 - 72,891,787EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307232 AgrOrtholog
BioCyc Gene G2FUF-37577 BioCyc
Ensembl Genes ENSRNOG00000027444 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038074.6 UniProtKB/TrEMBL
  ENSRNOT00000097874 ENTREZGENE
  ENSRNOT00000097874.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro ATPase-like_ParA/MinD UniProtKB/TrEMBL
  Mrp_CS UniProtKB/TrEMBL
  NUBPL-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  YlxH/NBP35 UniProtKB/TrEMBL
NCBI Gene 299008 ENTREZGENE
PANTHER IRON-SULFUR PROTEIN NUBPL UniProtKB/TrEMBL
  PTHR42961 UniProtKB/TrEMBL
Pfam ParA UniProtKB/TrEMBL
PhenoGen Nubpl PhenoGen
PROSITE MRP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027444 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6ARC8 ENTREZGENE, UniProtKB/TrEMBL
  A6HBI4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFQ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-03-31 Nubpl  NUBP iron-sulfur cluster assembly factor, mitochondrial  Nubpl  NUBP iron-sulfur cluster assembly factor like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-12-23 Nubpl  NUBP iron-sulfur cluster assembly factor like  Nubpl  nucleotide binding protein-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Nubpl  nucleotide binding protein-like   Nubpl_predicted  nucleotide binding protein-like (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Nubpl_predicted  nucleotide binding protein-like (predicted)  RGD1307232_predicted  similar to hypothetical protein FLJ12660 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1307232_predicted  similar to hypothetical protein FLJ12660 (predicted)  LOC299008_predicted  similar to hypothetical protein FLJ12660 (predicted)  Symbol and Name status set to approved 1331353 APPROVED
2005-01-20 RGD1307232_predicted  similar to hypothetical protein FLJ12660 (predicted)  LOC299008_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC299008_predicted  similar to hypothetical protein FLJ12660 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL