ZNF787 (zinc finger protein 787) - Rat Genome Database

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Gene: ZNF787 (zinc finger protein 787) Homo sapiens
Analyze
Symbol: ZNF787
Name: zinc finger protein 787
RGD ID: 1603274
HGNC Page HGNC:26998
Description: Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of PcG protein complex and transcription regulator complex. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: TIP20; transcription termination factor I interacting peptide 20; TTF-I interacting peptide 20; TTF-I-interacting peptide 20
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381956,087,366 - 56,121,295 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1956,087,366 - 56,121,295 (-)EnsemblGRCh38hg38GRCh38
GRCh371956,598,732 - 56,632,664 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361961,290,544 - 61,324,461 (-)NCBINCBI36Build 36hg18NCBI36
Celera1953,643,037 - 53,676,872 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1952,909,841 - 52,942,421 (-)NCBIHuRef
CHM1_11956,592,308 - 56,626,041 (-)NCBICHM1_1
T2T-CHM13v2.01959,186,221 - 59,220,132 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15717329   PMID:21873635   PMID:22658674   PMID:23151878   PMID:23182705   PMID:23667531   PMID:24457600   PMID:28473536   PMID:28514442   PMID:29117863   PMID:29509190  
PMID:29802200   PMID:31091453   PMID:31527615   PMID:32807901   PMID:32994395   PMID:33060197   PMID:33499712   PMID:33545068   PMID:33961781   PMID:35013218   PMID:35182466   PMID:35563538  
PMID:35831314   PMID:35944360   PMID:36543142   PMID:36574265   PMID:38329647  


Genomics

Comparative Map Data
ZNF787
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381956,087,366 - 56,121,295 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1956,087,366 - 56,121,295 (-)EnsemblGRCh38hg38GRCh38
GRCh371956,598,732 - 56,632,664 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361961,290,544 - 61,324,461 (-)NCBINCBI36Build 36hg18NCBI36
Celera1953,643,037 - 53,676,872 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1952,909,841 - 52,942,421 (-)NCBIHuRef
CHM1_11956,592,308 - 56,626,041 (-)NCBICHM1_1
T2T-CHM13v2.01959,186,221 - 59,220,132 (-)NCBIT2T-CHM13v2.0
Zfp787
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3976,134,488 - 6,162,382 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl76,134,490 - 6,158,996 (-)EnsemblGRCm39 Ensembl
GRCm3876,131,489 - 6,159,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl76,131,491 - 6,155,997 (-)EnsemblGRCm38mm10GRCm38
MGSCv3776,083,091 - 6,107,573 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3675,734,576 - 5,759,058 (-)NCBIMGSCv36mm8
Celera75,868,470 - 5,892,952 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map73.55NCBI
Zfp787
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,778,733 - 76,804,204 (+)NCBIGRCr8
mRatBN7.2167,745,702 - 67,771,132 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl167,758,757 - 67,771,132 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx173,110,065 - 73,122,440 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0181,747,224 - 81,759,599 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0174,939,697 - 74,952,176 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0171,416,042 - 71,447,195 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl171,416,110 - 71,447,195 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0172,808,989 - 72,840,114 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,193,153 - 66,205,951 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,258,858 - 66,283,419 (+)NCBI
Celera165,500,920 - 65,513,163 (+)NCBICelera
Cytogenetic Map1q12NCBI
Znf787
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955567511,779 - 537,882 (+)NCBIChiLan1.0ChiLan1.0
ZNF787
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22062,371,043 - 62,405,832 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11964,161,150 - 64,196,104 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01953,108,545 - 53,143,475 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11961,919,311 - 61,937,557 (-)NCBIpanpan1.1PanPan1.1panPan2
ZNF787
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11101,773,860 - 101,798,593 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1101,745,773 - 101,797,912 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1101,958,639 - 101,984,969 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01102,418,762 - 102,445,084 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1102,419,996 - 102,445,096 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,057,315 - 102,083,644 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01101,775,061 - 101,801,383 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01102,531,723 - 102,558,055 (+)NCBIUU_Cfam_GSD_1.0
Znf787
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093491,540,662 - 1,558,939 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936981338,684 - 354,109 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936981338,684 - 354,119 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF787
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl660,422,391 - 60,445,755 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1660,422,389 - 60,446,122 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2655,573,627 - 55,585,259 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103235345
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1648,676,314 - 48,712,009 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl648,676,266 - 48,708,934 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660451,387,872 - 1,425,531 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf787
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248321,589,417 - 1,603,262 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248321,589,504 - 1,602,377 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF787
35 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 19q13.33-13.43(chr19:50191219-58535818)x3 copy number gain See cases [RCV000050883] Chr19:50191219..58535818 [GRCh38]
Chr19:50694476..59047185 [GRCh37]
Chr19:55386288..63738997 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:49907832-58557889)x3 copy number gain See cases [RCV000052925] Chr19:49907832..58557889 [GRCh38]
Chr19:50411089..59069256 [GRCh37]
Chr19:55102901..63761068 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:51141518-58539965)x3 copy number gain See cases [RCV000052926] Chr19:51141518..58539965 [GRCh38]
Chr19:51644775..59051332 [GRCh37]
Chr19:56336587..63743144 [NCBI36]
Chr19:19q13.41-13.43		 pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47908540-58539965)x3 copy number gain See cases [RCV000052914] Chr19:47908540..58539965 [GRCh38]
Chr19:48411797..59051332 [GRCh37]
Chr19:53103609..63743144 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47929575-58572206)x3 copy number gain See cases [RCV000052915] Chr19:47929575..58572206 [GRCh38]
Chr19:48432832..59083573 [GRCh37]
Chr19:53124644..63775385 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52612432-58581203)x3 copy number gain See cases [RCV000134174] Chr19:52612432..58581203 [GRCh38]
Chr19:53115685..59092570 [GRCh37]
Chr19:57807497..63784382 [NCBI36]
Chr19:19q13.41-13.43		 pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52955056-58581203)x3 copy number gain See cases [RCV000134139] Chr19:52955056..58581203 [GRCh38]
Chr19:53458309..59092570 [GRCh37]
Chr19:58150121..63784382 [NCBI36]
Chr19:19q13.41-13.43		 pathogenic
GRCh38/hg38 19q13.42-13.43(chr19:55550939-57031576)x1 copy number loss See cases [RCV000135287] Chr19:55550939..57031576 [GRCh38]
Chr19:56062305..57542944 [GRCh37]
Chr19:60754117..62234756 [NCBI36]
Chr19:19q13.42-13.43		 likely pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:50152520-58581203)x3 copy number gain See cases [RCV000135843] Chr19:50152520..58581203 [GRCh38]
Chr19:50655777..59092570 [GRCh37]
Chr19:55347589..63784382 [NCBI36]
Chr19:19q13.33-13.43		 pathogenic
GRCh38/hg38 19q13.42-13.43(chr19:55048514-56972458)x3 copy number gain See cases [RCV000138139] Chr19:55048514..56972458 [GRCh38]
Chr19:55595687..57483826 [GRCh37]
Chr19:60251694..62175638 [NCBI36]
Chr19:19q13.42-13.43		 likely pathogenic
GRCh38/hg38 19q13.43(chr19:56068382-56169136)x1 copy number loss See cases [RCV000140180] Chr19:56068382..56169136 [GRCh38]
Chr19:56579748..56680505 [GRCh37]
Chr19:61271560..61372317 [NCBI36]
Chr19:19q13.43		 uncertain significance
GRCh38/hg38 19q13.41-13.43(chr19:52143873-58445521)x3 copy number gain See cases [RCV000142008] Chr19:52143873..58445521 [GRCh38]
Chr19:52647126..58956888 [GRCh37]
Chr19:57338938..63648700 [NCBI36]
Chr19:19q13.41-13.43		 pathogenic
GRCh38/hg38 19q13.42-13.43(chr19:55037146-56982033)x3 copy number gain See cases [RCV000142245] Chr19:55037146..56982033 [GRCh38]
Chr19:55548514..57493401 [GRCh37]
Chr19:60240326..62185213 [NCBI36]
Chr19:19q13.42-13.43		 uncertain significance
NM_001002836.4(ZNF787):c.1086G>C (p.Glu362Asp) single nucleotide variant Oromandibular-limb hypogenesis spectrum [RCV000240210] Chr19:56088086 [GRCh38]
Chr19:56599455 [GRCh37]
Chr19:19q13.43		 uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:56200298-57654005)x1 copy number loss Breast ductal adenocarcinoma [RCV000207313] Chr19:56200298..57654005 [GRCh37]
Chr19:19q13.42-13.43		 uncertain significance
chr19:56133299..57648277 complex variant complex Breast ductal adenocarcinoma [RCV000207023] Chr19:56133299..57648277 [GRCh37]
Chr19:19q13.42-13.43		 uncertain significance
GRCh37/hg19 19q13.43(chr19:56463675-56918488)x3 copy number gain not provided [RCV000488228] Chr19:56463675..56918488 [GRCh37]
Chr19:19q13.43		 uncertain significance
GRCh37/hg19 19q13.43(chr19:56581900-56652567)x1 copy number loss not provided [RCV000752792] Chr19:56581900..56652567 [GRCh37]
Chr19:19q13.43		 benign
GRCh37/hg19 19q13.33-13.43(chr19:50489390-59095359)x3 copy number gain See cases [RCV000445925] Chr19:50489390..59095359 [GRCh37]
Chr19:19q13.33-13.43		 pathogenic
GRCh37/hg19 19q13.43(chr19:56573129-56736675)x3 copy number gain See cases [RCV000445942] Chr19:56573129..56736675 [GRCh37]
Chr19:19q13.43		 uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:54344821-58956888)x3 copy number gain See cases [RCV000448186] Chr19:54344821..58956888 [GRCh37]
Chr19:19q13.42-13.43		 pathogenic
NM_001002836.4(ZNF787):c.680T>C (p.Val227Ala) single nucleotide variant not specified [RCV004306341] Chr19:56088492 [GRCh38]
Chr19:56599861 [GRCh37]
Chr19:19q13.43		 likely benign
GRCh37/hg19 19q13.42-13.43(chr19:56212463-57191708)x3 copy number gain See cases [RCV000510179] Chr19:56212463..57191708 [GRCh37]
Chr19:19q13.42-13.43		 uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:55549385-57489784)x3 copy number gain See cases [RCV000510290] Chr19:55549385..57489784 [GRCh37]
Chr19:19q13.42-13.43		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3 copy number gain See cases [RCV000511289] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic|uncertain significance
NM_001002836.4(ZNF787):c.790G>T (p.Ala264Ser) single nucleotide variant not specified [RCV004291811] Chr19:56088382 [GRCh38]
Chr19:56599751 [GRCh37]
Chr19:19q13.43		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888) copy number gain See cases [RCV000512296] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19q13.42-13.43(chr19:55844155-57408007)x3 copy number gain See cases [RCV000511123] Chr19:55844155..57408007 [GRCh37]
Chr19:19q13.42-13.43		 uncertain significance
GRCh37/hg19 19q13.43(chr19:56565455-57401997)x1 copy number loss not provided [RCV000684087] Chr19:56565455..57401997 [GRCh37]
Chr19:19q13.43		 uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:54196216-58759679)x3 copy number gain not provided [RCV000684095] Chr19:54196216..58759679 [GRCh37]
Chr19:19q13.42-13.43		 pathogenic
GRCh37/hg19 19q13.42-13.43(chr19:55779884-56896574)x1 copy number loss not provided [RCV000684089] Chr19:55779884..56896574 [GRCh37]
Chr19:19q13.42-13.43		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3 copy number gain not provided [RCV000752444] Chr19:260912..59097160 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3 copy number gain not provided [RCV000752439] Chr19:68029..59110290 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19q13.33-13.43(chr19:50740074-59097160)x3 copy number gain not provided [RCV000740208] Chr19:50740074..59097160 [GRCh37]
Chr19:19q13.33-13.43		 pathogenic
NM_001002836.4(ZNF787):c.152C>T (p.Ala51Val) single nucleotide variant not specified [RCV004286287] Chr19:56089020 [GRCh38]
Chr19:56600389 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.799G>C (p.Ala267Pro) single nucleotide variant not specified [RCV004295235] Chr19:56088373 [GRCh38]
Chr19:56599742 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.289G>A (p.Ala97Thr) single nucleotide variant not specified [RCV004306338] Chr19:56088883 [GRCh38]
Chr19:56600252 [GRCh37]
Chr19:19q13.43		 uncertain significance
GRCh37/hg19 19q13.43(chr19:56375683-56985884)x3 copy number gain not provided [RCV001007061] Chr19:56375683..56985884 [GRCh37]
Chr19:19q13.43		 uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:48463931-57095254)x3 copy number gain not provided [RCV001259944] Chr19:48463931..57095254 [GRCh37]
Chr19:19q13.33-13.43		 pathogenic
GRCh37/hg19 19q13.43(chr19:56358060-57007128)x3 copy number gain not provided [RCV001259952] Chr19:56358060..57007128 [GRCh37]
Chr19:19q13.43		 uncertain significance
GRCh37/hg19 19q13.43(chr19:56332200-57126728) copy number gain not specified [RCV002052691] Chr19:56332200..57126728 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.290C>G (p.Ala97Gly) single nucleotide variant not specified [RCV004306340] Chr19:56088882 [GRCh38]
Chr19:56600251 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.374T>C (p.Leu125Ser) single nucleotide variant not specified [RCV004333921] Chr19:56088798 [GRCh38]
Chr19:56600167 [GRCh37]
Chr19:19q13.43		 likely benign
NM_001002836.4(ZNF787):c.375G>C (p.Leu125Phe) single nucleotide variant not specified [RCV004333922] Chr19:56088797 [GRCh38]
Chr19:56600166 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.451A>G (p.Thr151Ala) single nucleotide variant not specified [RCV004333924] Chr19:56088721 [GRCh38]
Chr19:56600090 [GRCh37]
Chr19:19q13.43		 likely benign
GRCh37/hg19 19q13.43(chr19:56332374-56796637)x3 copy number gain not provided [RCV002472859] Chr19:56332374..56796637 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.709G>A (p.Val237Met) single nucleotide variant not specified [RCV004243877] Chr19:56088463 [GRCh38]
Chr19:56599832 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.563G>T (p.Ser188Ile) single nucleotide variant not specified [RCV004076229] Chr19:56088609 [GRCh38]
Chr19:56599978 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.775A>G (p.Met259Val) single nucleotide variant not specified [RCV004144679] Chr19:56088397 [GRCh38]
Chr19:56599766 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.1135G>A (p.Gly379Arg) single nucleotide variant not specified [RCV004106698] Chr19:56088037 [GRCh38]
Chr19:56599403 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.820G>C (p.Ala274Pro) single nucleotide variant not specified [RCV004110570] Chr19:56088352 [GRCh38]
Chr19:56599721 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.99T>G (p.Asp33Glu) single nucleotide variant not specified [RCV004163268] Chr19:56089073 [GRCh38]
Chr19:56600442 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.683C>T (p.Ala228Val) single nucleotide variant not specified [RCV004102429] Chr19:56088489 [GRCh38]
Chr19:56599858 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.633G>C (p.Lys211Asn) single nucleotide variant not specified [RCV004138618] Chr19:56088539 [GRCh38]
Chr19:56599908 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.743C>G (p.Ala248Gly) single nucleotide variant not specified [RCV004091425] Chr19:56088429 [GRCh38]
Chr19:56599798 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.190G>C (p.Ala64Pro) single nucleotide variant not specified [RCV004116036] Chr19:56088982 [GRCh38]
Chr19:56600351 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.799G>T (p.Ala267Ser) single nucleotide variant not specified [RCV004087489] Chr19:56088373 [GRCh38]
Chr19:56599742 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.737T>G (p.Val246Gly) single nucleotide variant not specified [RCV004081425] Chr19:56088435 [GRCh38]
Chr19:56599804 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.784G>A (p.Ala262Thr) single nucleotide variant not specified [RCV004295234] Chr19:56088388 [GRCh38]
Chr19:56599757 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.878C>T (p.Ala293Val) single nucleotide variant not specified [RCV004249968] Chr19:56088294 [GRCh38]
Chr19:56599663 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.790G>A (p.Ala264Thr) single nucleotide variant not specified [RCV004253430] Chr19:56088382 [GRCh38]
Chr19:56599751 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.777G>A (p.Met259Ile) single nucleotide variant not specified [RCV004272499] Chr19:56088395 [GRCh38]
Chr19:56599764 [GRCh37]
Chr19:19q13.43		 uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:49625130-57647352)x3 copy number gain not provided [RCV003485200] Chr19:49625130..57647352 [GRCh37]
Chr19:19q13.33-13.43		 likely pathogenic
GRCh37/hg19 19q13.42-13.43(chr19:56080158-57672397)x1 copy number loss not specified [RCV003986104] Chr19:56080158..57672397 [GRCh37]
Chr19:19q13.42-13.43		 uncertain significance
NM_001002836.4(ZNF787):c.827C>T (p.Ala276Val) single nucleotide variant not specified [RCV004492789] Chr19:56088345 [GRCh38]
Chr19:56599714 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.254A>G (p.Gln85Arg) single nucleotide variant not specified [RCV004492788] Chr19:56088918 [GRCh38]
Chr19:56600287 [GRCh37]
Chr19:19q13.43		 uncertain significance
NM_001002836.4(ZNF787):c.79+294G>A single nucleotide variant not provided [RCV003885862] Chr19:56102845 [GRCh38]
Chr19:56614214 [GRCh37]
Chr19:19q13.43		 likely benign
NM_001002836.4(ZNF787):c.757G>T (p.Ala253Ser) single nucleotide variant not specified [RCV004346378] Chr19:56088415 [GRCh38]
Chr19:56599784 [GRCh37]
Chr19:19q13.43		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1472
Count of miRNA genes:741
Interacting mature miRNAs:864
Transcripts:ENST00000270459, ENST00000586787, ENST00000587279
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH66150  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371956,598,751 - 56,598,883UniSTSGRCh37
Build 361961,290,563 - 61,290,695RGDNCBI36
Celera1953,643,056 - 53,643,188RGD
Cytogenetic Map19q13.43UniSTS
GeneMap99-GB4 RH Map19298.94UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2339 2108 1597 543 1736 402 4083 1757 1873 290 1429 1566 154 1090 2617 2
Low 93 876 126 79 209 62 272 436 1835 128 18 42 17 114 171 2
Below cutoff 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000586787   ⟹   ENSP00000471514
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,089,053 - 56,103,484 (-)Ensembl
RefSeq Acc Id: ENST00000587279   ⟹   ENSP00000465647
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,101,650 - 56,121,250 (-)Ensembl
RefSeq Acc Id: ENST00000610935   ⟹   ENSP00000478557
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1956,087,366 - 56,121,295 (-)Ensembl
RefSeq Acc Id: NM_001002836   ⟹   NP_001002836
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,087,366 - 56,121,295 (-)NCBI
GRCh371956,598,732 - 56,632,649 (-)RGD
Build 361961,290,544 - 61,324,461 (-)NCBI Archive
Celera1953,643,037 - 53,676,872 (-)RGD
HuRef1952,909,841 - 52,942,421 (-)ENTREZGENE
CHM1_11956,592,305 - 56,626,133 (-)NCBI
T2T-CHM13v2.01959,186,221 - 59,220,132 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001351682   ⟹   NP_001338611
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,101,650 - 56,121,295 (-)NCBI
T2T-CHM13v2.01959,200,445 - 59,220,132 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047438164   ⟹   XP_047294120
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,087,366 - 56,112,445 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001002836   ⟸   NM_001002836
- Peptide Label: isoform 1
- UniProtKB: A0A087WUD1 (UniProtKB/Swiss-Prot),   O00455 (UniProtKB/Swiss-Prot),   Q6DD87 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001338611   ⟸   NM_001351682
- Peptide Label: isoform 2
- UniProtKB: K7EKJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000478557   ⟸   ENST00000610935
RefSeq Acc Id: ENSP00000471514   ⟸   ENST00000586787
RefSeq Acc Id: ENSP00000465647   ⟸   ENST00000587279
RefSeq Acc Id: XP_047294120   ⟸   XM_047438164
- Peptide Label: isoform X1
- UniProtKB: Q6DD87 (UniProtKB/Swiss-Prot),   A0A087WUD1 (UniProtKB/Swiss-Prot),   O00455 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6DD87-F1-model_v2 AlphaFold Q6DD87 1-382 view protein structure

Promoters
RGD ID:13205811
Promoter ID:EPDNEW_H26486
Type:initiation region
Name:ZNF787_1
Description:zinc finger protein 787
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26487  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,121,295 - 56,121,355EPDNEW
RGD ID:13205815
Promoter ID:EPDNEW_H26487
Type:initiation region
Name:ZNF787_2
Description:zinc finger protein 787
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26486  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381956,121,520 - 56,121,580EPDNEW
RGD ID:6796427
Promoter ID:HG_KWN:31102
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001002836,   UC002QML.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361961,324,286 - 61,324,857 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:26998 AgrOrtholog
COSMIC ZNF787 COSMIC
Ensembl Genes ENSG00000142409 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000586787.1 UniProtKB/TrEMBL
  ENST00000587279 ENTREZGENE
  ENST00000587279.1 UniProtKB/TrEMBL
  ENST00000610935 ENTREZGENE
  ENST00000610935.2 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
GTEx ENSG00000142409 GTEx
HGNC ID HGNC:26998 ENTREZGENE
Human Proteome Map ZNF787 Human Proteome Map
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report hsa:126208 UniProtKB/Swiss-Prot
NCBI Gene 126208 ENTREZGENE
PANTHER GENE 12845-RELATED UniProtKB/Swiss-Prot
  TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/Swiss-Prot
Pfam zf-C2H2 UniProtKB/Swiss-Prot
  zf-C2H2_6 UniProtKB/Swiss-Prot
  zf-H2C2_2 UniProtKB/Swiss-Prot
PharmGKB PA162410481 PharmGKB
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
UniProt A0A087WUD1 ENTREZGENE
  K7EKJ5 ENTREZGENE, UniProtKB/TrEMBL
  M0R0X7_HUMAN UniProtKB/TrEMBL
  O00455 ENTREZGENE
  Q6DD87 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A087WUD1 UniProtKB/Swiss-Prot
  O00455 UniProtKB/Swiss-Prot