Svil (supervillin) - Rat Genome Database

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Gene: Svil (supervillin) Rattus norvegicus
Analyze
Symbol: Svil
Name: supervillin
RGD ID: 1306354
Description: Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in several processes, including actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within muscle cell differentiation. Predicted to be located in several cellular components, including costamere; focal adhesion; and sarcolemma. Predicted to be active in actin cytoskeleton and cytoplasm. Human ortholog(s) of this gene implicated in myofibrillar myopathy 10. Orthologous to human SVIL (supervillin); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361256
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81757,343,910 - 57,539,508 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1757,343,910 - 57,462,660 (-)EnsemblGRCr8
mRatBN7.21752,648,502 - 52,844,114 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1752,648,502 - 52,793,404 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1755,820,848 - 55,938,869 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01759,823,791 - 59,941,814 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01753,982,925 - 54,101,816 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01755,230,298 - 55,425,967 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1755,230,298 - 55,346,279 (-)Ensemblrn6Rnor6.0
Rnor_5.01752,915,519 - 53,109,502 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41760,897,631 - 60,898,874 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1748,653,106 - 48,767,953 (-)NCBICelera
RGSC_v3.11760,908,466 - 60,983,517 (-)NCBI
Cytogenetic Map17q12.1NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
8-Br-cAMP  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amiodarone  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
clomiphene  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
estrone  (ISO)
ethanol  (EXP,ISO)
fenamidone  (ISO)
fenvalerate  (EXP)
fipronil  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furfural  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hexestrol  (ISO)
L-methionine  (ISO)
mestranol  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
methylseleninic acid  (ISO)
mifepristone  (ISO)
N(4)-hydroxycytidine  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (IBA,IEA,ISO)
cell periphery  (ISO)
cell projection  (IEA)
cleavage furrow  (IEA)
costamere  (IEA,ISO)
cytoplasm  (IEA,ISO)
cytoskeleton  (IEA)
focal adhesion  (ISO)
midbody  (IEA)
nucleoplasm  (ISO)
nucleus  (IEA,ISO)
plasma membrane  (IEA,ISO)
podosome  (IEA)
sarcolemma  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12711699   PMID:21423176   PMID:24625528   PMID:35352799  


Genomics

Comparative Map Data
Svil
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81757,343,910 - 57,539,508 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1757,343,910 - 57,462,660 (-)EnsemblGRCr8
mRatBN7.21752,648,502 - 52,844,114 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1752,648,502 - 52,793,404 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1755,820,848 - 55,938,869 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01759,823,791 - 59,941,814 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01753,982,925 - 54,101,816 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01755,230,298 - 55,425,967 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1755,230,298 - 55,346,279 (-)Ensemblrn6Rnor6.0
Rnor_5.01752,915,519 - 53,109,502 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41760,897,631 - 60,898,874 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1748,653,106 - 48,767,953 (-)NCBICelera
RGSC_v3.11760,908,466 - 60,983,517 (-)NCBI
Cytogenetic Map17q12.1NCBI
SVIL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381029,457,338 - 29,736,936 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1029,457,332 - 29,737,123 (-)Ensemblhg38GRCh38
GRCh371029,746,267 - 30,025,865 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361029,786,283 - 30,064,736 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341029,786,282 - 29,963,907NCBI
Celera1029,511,358 - 29,789,724 (-)NCBICelera
Cytogenetic Map10p11.23NCBI
HuRef1029,465,586 - 29,744,249 (-)NCBIHuRef
CHM1_11029,746,277 - 30,024,634 (-)NCBICHM1_1
T2T-CHM13v2.01029,488,436 - 29,767,980 (-)NCBIT2T-CHM13v2.0
Svil
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39184,920,497 - 5,119,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl184,920,540 - 5,119,299 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38184,920,467 - 5,119,293 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl184,920,540 - 5,119,299 (+)Ensemblmm10GRCm38
MGSCv37185,046,587 - 5,119,291 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36184,920,565 - 5,119,288 (+)NCBIMGSCv36mm8
Celera185,092,122 - 5,164,709 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map183.02NCBI
Svil
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542922,370,458 - 22,464,579 (+)Ensembl
ChiLan1.0NW_00495542922,339,739 - 22,465,471 (+)NCBIChiLan1.0ChiLan1.0
LOC100977039
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2842,129,089 - 42,406,690 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11042,123,061 - 42,412,002 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01029,609,492 - 29,886,920 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11029,965,789 - 30,241,150 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1029,965,792 - 30,064,765 (-)EnsemblpanPan2panpan1.1
SVIL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1216,004,160 - 16,234,434 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl216,004,951 - 16,174,218 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha213,491,738 - 13,728,974 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0214,241,118 - 14,472,207 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl214,241,141 - 14,393,547 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1213,679,909 - 13,916,712 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0213,571,334 - 13,802,471 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0213,845,719 - 13,949,060 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Svil
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093449,841,704 - 9,989,550 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366134,404,711 - 4,542,890 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366134,391,928 - 4,540,125 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SVIL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1041,282,412 - 41,462,764 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11041,176,358 - 41,462,750 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21045,876,765 - 46,002,098 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SVIL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1929,072,613 - 29,256,563 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl929,072,322 - 29,164,759 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605135,142,724 - 35,409,315 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Svil
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248053,230,291 - 3,320,597 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248053,111,789 - 3,321,459 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Svil
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11431,306,651 - 31,438,990 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Svil
1075 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:228
Count of miRNA genes:157
Interacting mature miRNAs:170
Transcripts:ENSRNOT00000025037, ENSRNOT00000050687, ENSRNOT00000064331
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174949693265155015Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173310464578104645Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175482950393515804Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)173544694975762341Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173310464578104645Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175560459793006569Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat

Markers in Region
D17Pas1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21752,784,664 - 52,785,007 (+)MAPPERmRatBN7.2
Rnor_6.01755,365,404 - 55,365,742NCBIRnor6.0
Rnor_5.01753,049,993 - 53,050,331UniSTSRnor5.0
RGSC_v3.41761,036,124 - 61,036,462UniSTSRGSC3.4
Celera1748,785,245 - 48,785,573UniSTS
Celera1748,785,245 - 48,785,917UniSTS
RH 3.4 Map17535.49UniSTS
Cytogenetic Map17q12.1UniSTS
D17Rat57  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81757,473,964 - 57,474,143 (+)Marker Load Pipeline
mRatBN7.21752,778,565 - 52,778,744 (+)MAPPERmRatBN7.2
Rnor_6.01755,359,306 - 55,359,484NCBIRnor6.0
Rnor_5.01753,043,895 - 53,044,073UniSTSRnor5.0
RGSC_v3.41761,030,026 - 61,030,204UniSTSRGSC3.4
RGSC_v3.41761,030,025 - 61,030,204RGDRGSC3.4
Celera1748,779,148 - 48,779,324UniSTS
RGSC_v3.11761,040,859 - 61,041,037RGD
RH 3.4 Map17556.8RGD
RH 3.4 Map17556.8UniSTS
FHH x ACI Map1738.8399UniSTS
FHH x ACI Map1738.8399RGD
Cytogenetic Map17q12.1UniSTS
BF405465  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21752,779,890 - 52,780,097 (+)MAPPERmRatBN7.2
Rnor_6.01755,360,630 - 55,360,836NCBIRnor6.0
Rnor_5.01753,045,219 - 53,045,425UniSTSRnor5.0
RGSC_v3.41761,031,351 - 61,031,557UniSTSRGSC3.4
Celera1748,780,471 - 48,780,677UniSTS
RH 3.4 Map17537.29UniSTS
Cytogenetic Map17q12.1UniSTS
RH131282  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21752,659,981 - 52,660,198 (+)MAPPERmRatBN7.2
Rnor_6.01755,241,487 - 55,241,703NCBIRnor6.0
Rnor_5.01752,926,708 - 52,926,924UniSTSRnor5.0
RGSC_v3.41760,909,577 - 60,909,793UniSTSRGSC3.4
Celera1748,664,355 - 48,664,571UniSTS
Cytogenetic Map17q12.1UniSTS
RH133470  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21752,648,636 - 52,648,829 (+)MAPPERmRatBN7.2
Rnor_6.01755,230,433 - 55,230,625NCBIRnor6.0
Rnor_5.01752,915,654 - 52,915,846UniSTSRnor5.0
RGSC_v3.41760,897,746 - 60,897,938UniSTSRGSC3.4
Celera1748,653,241 - 48,653,433UniSTS
RH 3.4 Map17536.69UniSTS
Cytogenetic Map17q12.1UniSTS
D10S1311E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21752,656,260 - 52,657,176 (+)MAPPERmRatBN7.2
Rnor_6.01755,238,061 - 55,238,976NCBIRnor6.0
Rnor_5.01752,923,282 - 52,924,197UniSTSRnor5.0
RGSC_v3.41760,905,374 - 60,906,289UniSTSRGSC3.4
Celera1748,660,855 - 48,661,770UniSTS
Cytogenetic Map17q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 355 192 11 144 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000025037   ⟹   ENSRNOP00000025037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1757,343,910 - 57,462,660 (-)Ensembl
mRatBN7.2 Ensembl1752,648,502 - 52,767,260 (-)Ensembl
Rnor_6.0 Ensembl1755,230,298 - 55,346,279 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000064331   ⟹   ENSRNOP00000062712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1757,343,910 - 57,414,582 (-)Ensembl
mRatBN7.2 Ensembl1752,648,502 - 52,719,178 (-)Ensembl
Rnor_6.0 Ensembl1755,230,847 - 55,300,998 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095281   ⟹   ENSRNOP00000092895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1757,343,910 - 57,462,660 (-)Ensembl
mRatBN7.2 Ensembl1752,648,525 - 52,793,404 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100141   ⟹   ENSRNOP00000087950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1757,343,910 - 57,414,582 (-)Ensembl
mRatBN7.2 Ensembl1752,648,502 - 52,719,178 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100582   ⟹   ENSRNOP00000088108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1757,343,910 - 57,423,028 (-)Ensembl
mRatBN7.2 Ensembl1752,648,502 - 52,727,368 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105051   ⟹   ENSRNOP00000096976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1757,343,910 - 57,462,660 (-)Ensembl
mRatBN7.2 Ensembl1752,648,502 - 52,767,260 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108405   ⟹   ENSRNOP00000081911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1757,343,910 - 57,462,660 (-)Ensembl
mRatBN7.2 Ensembl1752,648,502 - 52,767,260 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111716   ⟹   ENSRNOP00000077708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1757,343,910 - 57,462,660 (-)Ensembl
mRatBN7.2 Ensembl1752,648,502 - 52,767,260 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117999   ⟹   ENSRNOP00000097742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1757,343,910 - 57,414,477 (-)Ensembl
mRatBN7.2 Ensembl1752,648,502 - 52,767,260 (-)Ensembl
RefSeq Acc Id: NM_001108416   ⟹   NP_001101886
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,910 - 57,462,660 (-)NCBI
mRatBN7.21752,648,502 - 52,767,260 (-)NCBI
Rnor_6.01755,230,298 - 55,346,279 (-)NCBI
Rnor_5.01752,915,519 - 53,109,502 (-)NCBI
RGSC_v3.41760,897,631 - 60,898,874 (-)RGD
Celera1748,653,106 - 48,767,953 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254030   ⟹   XP_006254092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,539,508 (-)NCBI
mRatBN7.21752,648,509 - 52,844,114 (-)NCBI
Rnor_6.01755,230,298 - 55,425,967 (-)NCBI
Rnor_5.01752,915,519 - 53,109,502 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254031   ⟹   XP_006254093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,470,843 (-)NCBI
mRatBN7.21752,648,509 - 52,767,758 (-)NCBI
Rnor_6.01755,230,298 - 55,348,025 (-)NCBI
Rnor_5.01752,915,519 - 53,109,502 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600615   ⟹   XP_017456104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,766,067 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600616   ⟹   XP_017456105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,766,067 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600617   ⟹   XP_017456106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,766,067 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600618   ⟹   XP_017456107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,766,067 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600619   ⟹   XP_017456108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,766,067 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600621   ⟹   XP_017456110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,725,693 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600623   ⟹   XP_017456112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,725,693 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600624   ⟹   XP_017456113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,725,693 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600625   ⟹   XP_017456114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,725,693 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600626   ⟹   XP_017456115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,725,693 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600627   ⟹   XP_017456116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,725,693 (-)NCBI
Rnor_6.01755,230,298 - 55,307,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095918   ⟹   XP_038951846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,725,693 (-)NCBI
RefSeq Acc Id: XM_039095919   ⟹   XP_038951847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
mRatBN7.21752,648,509 - 52,725,693 (-)NCBI
RefSeq Acc Id: XM_063276624   ⟹   XP_063132694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
RefSeq Acc Id: XM_063276625   ⟹   XP_063132695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
RefSeq Acc Id: XM_063276626   ⟹   XP_063132696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,538,390 (-)NCBI
RefSeq Acc Id: XM_063276627   ⟹   XP_063132697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
RefSeq Acc Id: XM_063276628   ⟹   XP_063132698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81757,343,933 - 57,421,099 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001101886 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254092 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254093 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456104 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456105 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456106 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456107 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456108 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456110 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456112 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456113 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456114 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456115 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456116 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951846 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951847 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132694 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132695 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132696 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132697 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132698 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL87446 (Get FASTA)   NCBI Sequence Viewer  
  EDL87447 (Get FASTA)   NCBI Sequence Viewer  
  EDL87448 (Get FASTA)   NCBI Sequence Viewer  
  EDL87449 (Get FASTA)   NCBI Sequence Viewer  
  EDL87450 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025037
  ENSRNOP00000025037.7
  ENSRNOP00000062712
  ENSRNOP00000062712.4
  ENSRNOP00000077708.1
  ENSRNOP00000081911
  ENSRNOP00000081911.2
  ENSRNOP00000087950.1
  ENSRNOP00000088108
  ENSRNOP00000088108.1
  ENSRNOP00000092895
  ENSRNOP00000092895.1
  ENSRNOP00000096976.1
  ENSRNOP00000097742
  ENSRNOP00000097742.2
RefSeq Acc Id: NP_001101886   ⟸   NM_001108416
- UniProtKB: F1M155 (UniProtKB/TrEMBL),   A0A8I6A8S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254092   ⟸   XM_006254030
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A8S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254093   ⟸   XM_006254031
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A8S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456116   ⟸   XM_017600627
- Peptide Label: isoform X18
- UniProtKB: A0A8I6AHH0 (UniProtKB/TrEMBL),   D3ZEZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456115   ⟸   XM_017600626
- Peptide Label: isoform X17
- UniProtKB: D3ZEZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456114   ⟸   XM_017600625
- Peptide Label: isoform X15
- UniProtKB: D3ZEZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456112   ⟸   XM_017600623
- Peptide Label: isoform X12
- UniProtKB: D3ZEZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456104   ⟸   XM_017600615
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AVE6 (UniProtKB/TrEMBL),   A0A8I6A8S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456113   ⟸   XM_017600624
- Peptide Label: isoform X13
- UniProtKB: D3ZEZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456110   ⟸   XM_017600621
- Peptide Label: isoform X10
- UniProtKB: D3ZEZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456108   ⟸   XM_017600619
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZKD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456106   ⟸   XM_017600617
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A8S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456107   ⟸   XM_017600618
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A8S3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456105   ⟸   XM_017600616
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A8S3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000062712   ⟸   ENSRNOT00000064331
Ensembl Acc Id: ENSRNOP00000025037   ⟸   ENSRNOT00000025037
RefSeq Acc Id: XP_038951847   ⟸   XM_039095919
- Peptide Label: isoform X14
- UniProtKB: D3ZEZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951846   ⟸   XM_039095918
- Peptide Label: isoform X11
- UniProtKB: D3ZEZ9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097742   ⟸   ENSRNOT00000117999
Ensembl Acc Id: ENSRNOP00000088108   ⟸   ENSRNOT00000100582
Ensembl Acc Id: ENSRNOP00000087950   ⟸   ENSRNOT00000100141
Ensembl Acc Id: ENSRNOP00000081911   ⟸   ENSRNOT00000108405
Ensembl Acc Id: ENSRNOP00000077708   ⟸   ENSRNOT00000111716
Ensembl Acc Id: ENSRNOP00000096976   ⟸   ENSRNOT00000105051
Ensembl Acc Id: ENSRNOP00000092895   ⟸   ENSRNOT00000095281
RefSeq Acc Id: XP_063132696   ⟸   XM_063276626
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A8S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132698   ⟸   XM_063276628
- Peptide Label: isoform X16
- UniProtKB: D3ZEZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132697   ⟸   XM_063276627
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AQK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132695   ⟸   XM_063276625
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AQK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132694   ⟸   XM_063276624
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A8S3 (UniProtKB/TrEMBL),   A0A8I5ZT25 (UniProtKB/TrEMBL)
Protein Domains
HP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M155-F1-model_v2 AlphaFold F1M155 1-2165 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700524
Promoter ID:EPDNEW_R11046
Type:single initiation site
Name:Svil_1
Description:supervillin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01755,346,257 - 55,346,317EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306354 AgrOrtholog
BioCyc Gene G2FUF-9026 BioCyc
Ensembl Genes ENSRNOG00000018110 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025037 ENTREZGENE
  ENSRNOT00000025037.10 UniProtKB/TrEMBL
  ENSRNOT00000064331 ENTREZGENE
  ENSRNOT00000064331.6 UniProtKB/TrEMBL
  ENSRNOT00000095281 ENTREZGENE
  ENSRNOT00000095281.2 UniProtKB/TrEMBL
  ENSRNOT00000100141.2 UniProtKB/TrEMBL
  ENSRNOT00000100582 ENTREZGENE
  ENSRNOT00000100582.2 UniProtKB/TrEMBL
  ENSRNOT00000105051.2 UniProtKB/TrEMBL
  ENSRNOT00000108405 ENTREZGENE
  ENSRNOT00000108405.2 UniProtKB/TrEMBL
  ENSRNOT00000111716.2 UniProtKB/TrEMBL
  ENSRNOT00000117999 ENTREZGENE
  ENSRNOT00000117999.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.950.10 UniProtKB/TrEMBL
  3.40.20.10 UniProtKB/TrEMBL
InterPro ADF-H/Gelsolin-like_dom UniProtKB/TrEMBL
  Gelsolin UniProtKB/TrEMBL
  Gelsolin_dom UniProtKB/TrEMBL
  Villin_headpiece UniProtKB/TrEMBL
  Villin_headpiece_dom_sf UniProtKB/TrEMBL
KEGG Report rno:361256 UniProtKB/TrEMBL
NCBI Gene 361256 ENTREZGENE
PANTHER PTHR11977 UniProtKB/TrEMBL
  SUPERVILLIN UniProtKB/TrEMBL
Pfam Gelsolin UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
PhenoGen Svil PhenoGen
PRINTS GELSOLIN UniProtKB/TrEMBL
PROSITE PS51089 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018110 RatGTEx
SMART GEL UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
Superfamily-SCOP Actin depolymerizing proteins UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
UniProt A0A8I5ZKD0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZT25 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8S3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHH0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AQK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AVE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GFU3_RAT UniProtKB/TrEMBL
  D3ZEZ9 ENTREZGENE, UniProtKB/TrEMBL
  F1M155 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Svil  supervillin   Svil_predicted  supervillin (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Svil_predicted  supervillin (predicted)      Symbol and Name status set to approved 70820 APPROVED