LOC103238065 (supervillin-like) - Rat Genome Database

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Pathways
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Gene: LOC103238065 (supervillin-like) Chlorocebus sabaeus
Analyze
Symbol: LOC103238065 (Ensembl: SVIL)
Name: supervillin-like (Ensembl:supervillin)
RGD ID: 18596500
Description: ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); phosphatidylinositol-4,5-bisphosphate binding (inferred); INVOLVED IN actin filament severing (inferred); actin polymerization or depolymerization (inferred); barbed-end actin filament capping (inferred); FOUND IN actin cytoskeleton (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1929,072,613 - 29,256,563 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl929,072,322 - 29,164,759 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605135,142,724 - 35,409,315 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 15 3 15
Low 21 17 45
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008002671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000009772   ⟹   ENSCSAP00000007881
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl929,072,322 - 29,164,759 (-)Ensembl
RefSeq Acc Id: XM_037983431   ⟹   XP_037839359
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,731 - 35,409,315 (-)NCBI
RefSeq Acc Id: XM_037983432   ⟹   XP_037839360
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,731 - 35,408,403 (-)NCBI
RefSeq Acc Id: XM_037983433   ⟹   XP_037839361
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,724 - 35,357,843 (-)NCBI
RefSeq Acc Id: XM_037983434   ⟹   XP_037839362
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,724 - 35,407,767 (-)NCBI
RefSeq Acc Id: XM_037983435   ⟹   XP_037839363
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,731 - 35,409,315 (-)NCBI
RefSeq Acc Id: XM_037983436   ⟹   XP_037839364
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,724 - 35,313,847 (-)NCBI
RefSeq Acc Id: XM_037983437   ⟹   XP_037839365
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,731 - 35,409,315 (-)NCBI
RefSeq Acc Id: XM_037983438   ⟹   XP_037839366
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,731 - 35,409,315 (-)NCBI
RefSeq Acc Id: XM_037983439   ⟹   XP_037839367
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,731 - 35,409,315 (-)NCBI
RefSeq Acc Id: XM_037983440   ⟹   XP_037839368
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,731 - 35,409,315 (-)NCBI
RefSeq Acc Id: XM_037983441   ⟹   XP_037839369
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,731 - 35,409,315 (-)NCBI
RefSeq Acc Id: XM_037983442   ⟹   XP_037839370
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,731 - 35,409,315 (-)NCBI
RefSeq Acc Id: XM_037983443   ⟹   XP_037839371
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,142,731 - 35,409,315 (-)NCBI
RefSeq Acc Id: XM_037983444   ⟹   XP_037839372
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605135,143,413 - 35,409,315 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000007881   ⟸   ENSCSAT00000009772
RefSeq Acc Id: XP_037839362   ⟸   XM_037983434
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839361   ⟸   XM_037983433
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839364   ⟸   XM_037983436
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839371   ⟸   XM_037983443
- Peptide Label: isoform X9
RefSeq Acc Id: XP_037839370   ⟸   XM_037983442
- Peptide Label: isoform X8
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839369   ⟸   XM_037983441
- Peptide Label: isoform X7
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839365   ⟸   XM_037983437
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839368   ⟸   XM_037983440
- Peptide Label: isoform X6
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839367   ⟸   XM_037983439
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839366   ⟸   XM_037983438
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839363   ⟸   XM_037983435
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839359   ⟸   XM_037983431
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839360   ⟸   XM_037983432
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RGZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839372   ⟸   XM_037983444
- Peptide Label: isoform X10


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011685 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009772.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.950.10 UniProtKB/TrEMBL
  3.40.20.10 UniProtKB/TrEMBL
InterPro ADF-H/Gelsolin-like_dom_sf UniProtKB/TrEMBL
  Gelsolin-like_dom UniProtKB/TrEMBL
  Villin/Gelsolin UniProtKB/TrEMBL
  Villin_headpiece UniProtKB/TrEMBL
  Villin_headpiece_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC103238065 ENTREZGENE
PANTHER PTHR11977 UniProtKB/TrEMBL
  SUPERVILLIN UniProtKB/TrEMBL
Pfam Gelsolin UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
PRINTS GELSOLIN UniProtKB/TrEMBL
PROSITE PS51089 UniProtKB/TrEMBL
SMART GEL UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
Superfamily-SCOP Actin depolymerizing proteins UniProtKB/TrEMBL
  SSF47050 UniProtKB/TrEMBL
UniProt A0A0D9RGZ2 ENTREZGENE, UniProtKB/TrEMBL