Dcaf1 (DDB1 and CUL4 associated factor 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Dcaf1 (DDB1 and CUL4 associated factor 1) Rattus norvegicus
Analyze
Symbol: Dcaf1
Name: DDB1 and CUL4 associated factor 1
RGD ID: 1305176
Description: Predicted to enable histone H2AT120 kinase activity; nuclear estrogen receptor binding activity; and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in several processes, including V(D)J recombination; cell competition in a multicellular organism; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within base-excision repair, AP site formation via deaminated base removal and positive regulation of protein catabolic process. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of COP9 signalosome and Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in centrosome and nucleus. Orthologous to human DCAF1 (DDB1 and CUL4 associated factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DDB1- and CUL4-associated factor 1; LOC315987; RGD1305176; similar to mKIAA0800 protein; Vpr (HIV-1) binding protein; Vprbp
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88116,344,927 - 116,419,329 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8116,344,979 - 116,419,328 (+)EnsemblGRCr8
mRatBN7.28107,466,229 - 107,540,633 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,474,312 - 107,540,627 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8113,097,883 - 113,164,276 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08111,297,067 - 111,363,450 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08109,139,836 - 109,206,229 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,538,365 - 115,615,282 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,546,712 - 115,615,282 (+)Ensemblrn6Rnor6.0
Rnor_5.08114,898,496 - 114,974,112 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48112,034,908 - 112,102,320 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8106,786,375 - 106,852,580 (+)NCBICelera
RGSC_v3.18112,061,887 - 112,120,790 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16949367   PMID:18850735   PMID:20178741   PMID:20644714   PMID:22157821   PMID:24140421   PMID:28068668  


Genomics

Comparative Map Data
Dcaf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88116,344,927 - 116,419,329 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8116,344,979 - 116,419,328 (+)EnsemblGRCr8
mRatBN7.28107,466,229 - 107,540,633 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,474,312 - 107,540,627 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8113,097,883 - 113,164,276 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08111,297,067 - 111,363,450 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08109,139,836 - 109,206,229 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,538,365 - 115,615,282 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,546,712 - 115,615,282 (+)Ensemblrn6Rnor6.0
Rnor_5.08114,898,496 - 114,974,112 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48112,034,908 - 112,102,320 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8106,786,375 - 106,852,580 (+)NCBICelera
RGSC_v3.18112,061,887 - 112,120,790 (+)NCBI
Cytogenetic Map8q32NCBI
DCAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,395,867 - 51,505,639 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,395,867 - 51,500,088 (-)Ensemblhg38GRCh38
GRCh37351,433,298 - 51,534,031 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,408,338 - 51,509,041 (-)NCBIBuild 36Build 36hg18NCBI36
Celera351,407,652 - 51,511,665 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef351,490,525 - 51,594,696 (-)NCBIHuRef
CHM1_1351,385,206 - 51,485,919 (-)NCBICHM1_1
T2T-CHM13v2.0351,426,284 - 51,536,063 (-)NCBIT2T-CHM13v2.0
Dcaf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,691,354 - 106,758,191 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,699,073 - 106,758,191 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389106,814,169 - 106,880,992 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,821,874 - 106,880,992 (+)Ensemblmm10GRCm38
MGSCv379106,724,307 - 106,783,323 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369106,680,077 - 106,738,533 (+)NCBIMGSCv36mm8
Celera9106,446,540 - 106,505,051 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.98NCBI
Dcaf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,085,386 - 3,154,671 (-)Ensembl
ChiLan1.0NW_0049555323,085,386 - 3,153,952 (-)NCBIChiLan1.0ChiLan1.0
DCAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,380,823 - 51,490,357 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,385,603 - 51,494,324 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,326,589 - 51,430,217 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1352,560,427 - 52,668,919 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl352,560,427 - 52,663,807 (-)EnsemblpanPan2panpan1.1
DCAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12038,109,974 - 38,187,621 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2038,125,078 - 38,187,107 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2038,089,540 - 38,167,146 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02038,458,824 - 38,536,454 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,464,033 - 38,536,453 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,822,249 - 37,899,846 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02038,226,332 - 38,304,159 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,516,174 - 38,593,797 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dcaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,025,750 - 66,101,560 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365292,786,252 - 2,856,967 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365292,786,252 - 2,856,516 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1333,670,977 - 33,750,772 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11333,670,976 - 33,750,872 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21336,900,767 - 36,968,157 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12212,736,784 - 12,843,762 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2212,739,665 - 12,823,363 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041154,127,859 - 154,231,832 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcaf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247305,176,828 - 5,240,680 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247305,176,828 - 5,245,548 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dcaf1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1898,131,459 - 98,196,729 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dcaf1
623 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:350
Count of miRNA genes:195
Interacting mature miRNAs:230
Transcripts:ENSRNOT00000018932
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
D8Uia4  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88116,378,922 - 116,379,089 (+)Marker Load Pipeline
mRatBN7.28107,500,218 - 107,500,385 (+)MAPPERmRatBN7.2
Rnor_6.08115,563,512 - 115,563,678NCBIRnor6.0
Rnor_5.08114,923,447 - 114,923,613UniSTSRnor5.0
RGSC_v3.48112,060,884 - 112,061,051RGDRGSC3.4
RGSC_v3.48112,060,885 - 112,061,051UniSTSRGSC3.4
Celera8106,812,114 - 106,812,280UniSTS
RGSC_v3.18112,080,339 - 112,080,506RGD
Cytogenetic Map8q32UniSTS
D8Uia5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28107,500,239 - 107,500,375 (+)MAPPERmRatBN7.2
Rnor_6.08115,563,533 - 115,563,668NCBIRnor6.0
Rnor_5.08114,923,468 - 114,923,603UniSTSRnor5.0
RGSC_v3.48112,060,905 - 112,061,041RGDRGSC3.4
RGSC_v3.48112,060,906 - 112,061,041UniSTSRGSC3.4
Celera8106,812,135 - 106,812,270UniSTS
RGSC_v3.18112,080,360 - 112,080,496RGD
Cytogenetic Map8q32UniSTS
D8Got358  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88116,378,214 - 116,378,415 (+)Marker Load Pipeline
Celera8106,811,329 - 106,811,561UniSTS
Cytogenetic Map8q32UniSTS
C79467  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,810,362 - 15,810,466 (+)MAPPERmRatBN7.2
mRatBN7.28107,540,327 - 107,540,448 (+)MAPPERmRatBN7.2
Rnor_6.08115,602,723 - 115,602,843NCBIRnor6.0
Rnor_6.08115,614,972 - 115,615,092NCBIRnor6.0
Rnor_5.08114,973,802 - 114,973,922UniSTSRnor5.0
Rnor_5.08114,962,082 - 114,962,202UniSTSRnor5.0
RGSC_v3.48112,102,010 - 112,102,130UniSTSRGSC3.4
Celera8106,852,269 - 106,852,389UniSTS
Cytogenetic Map8q32UniSTS
AW530463  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28107,508,795 - 107,508,992 (+)MAPPERmRatBN7.2
Rnor_6.08115,572,085 - 115,572,281NCBIRnor6.0
Rnor_5.08114,932,020 - 114,932,216UniSTSRnor5.0
RGSC_v3.48112,069,459 - 112,069,655UniSTSRGSC3.4
Celera8106,820,688 - 106,820,884UniSTS
RH 3.4 Map81137.1UniSTS
Cytogenetic Map8q32UniSTS
RH137304  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.08114,973,881 - 114,974,032NCBIRnor5.0
Rnor_5.08114,962,161 - 114,962,312NCBIRnor5.0
RGSC_v3.48112,102,090 - 112,102,240UniSTSRGSC3.4
Celera8106,852,349 - 106,852,499UniSTS
RH 3.4 Map81137.1UniSTS
Cytogenetic Map8q32UniSTS
RH138156  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28107,541,257 - 107,541,391 (+)MAPPERmRatBN7.2
Rnor_6.08115,615,902 - 115,616,035NCBIRnor6.0
Rnor_5.08114,974,732 - 114,974,865UniSTSRnor5.0
RGSC_v3.48112,102,940 - 112,103,073UniSTSRGSC3.4
Celera8106,853,200 - 106,853,333UniSTS
RH 3.4 Map81152.7UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000018932   ⟹   ENSRNOP00000018932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8116,352,987 - 116,419,328 (+)Ensembl
mRatBN7.2 Ensembl8107,474,312 - 107,540,627 (+)Ensembl
Rnor_6.0 Ensembl8115,546,893 - 115,615,282 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079801   ⟹   ENSRNOP00000075456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8116,344,981 - 116,413,982 (+)Ensembl
mRatBN7.2 Ensembl8107,474,312 - 107,535,284 (+)Ensembl
Rnor_6.0 Ensembl8115,546,712 - 115,611,314 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113346   ⟹   ENSRNOP00000096748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8116,362,316 - 116,405,500 (+)Ensembl
mRatBN7.2 Ensembl8107,483,611 - 107,526,800 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000136080   ⟹   ENSRNOP00000105240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8116,344,979 - 116,415,032 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156185   ⟹   ENSRNOP00000105563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8116,344,981 - 116,413,244 (+)Ensembl
RefSeq Acc Id: NM_001354204   ⟹   NP_001341133
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88116,353,033 - 116,419,329 (+)NCBI
mRatBN7.28107,474,328 - 107,540,633 (+)NCBI
RefSeq Acc Id: XM_039081570   ⟹   XP_038937498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88116,352,216 - 116,413,248 (+)NCBI
mRatBN7.28107,473,536 - 107,534,552 (+)NCBI
RefSeq Acc Id: XM_039081571   ⟹   XP_038937499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88116,344,927 - 116,413,248 (+)NCBI
mRatBN7.28107,466,229 - 107,534,552 (+)NCBI
RefSeq Acc Id: XM_039081572   ⟹   XP_038937500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88116,352,217 - 116,419,329 (+)NCBI
mRatBN7.28107,473,537 - 107,539,918 (+)NCBI
RefSeq Acc Id: XM_039081573   ⟹   XP_038937501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88116,352,216 - 116,419,329 (+)NCBI
mRatBN7.28107,473,536 - 107,539,918 (+)NCBI
RefSeq Acc Id: XM_039081574   ⟹   XP_038937502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88116,352,995 - 116,413,248 (+)NCBI
mRatBN7.28107,474,267 - 107,534,552 (+)NCBI
RefSeq Acc Id: XM_039081575   ⟹   XP_038937503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88116,353,490 - 116,413,248 (+)NCBI
mRatBN7.28107,474,613 - 107,534,552 (+)NCBI
RefSeq Acc Id: XM_063265618   ⟹   XP_063121688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88116,352,216 - 116,415,930 (+)NCBI
RefSeq Acc Id: XR_005487844
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88116,352,216 - 116,418,416 (+)NCBI
mRatBN7.28107,473,536 - 107,539,918 (+)NCBI
Ensembl Acc Id: ENSRNOP00000075456   ⟸   ENSRNOT00000079801
Ensembl Acc Id: ENSRNOP00000018932   ⟸   ENSRNOT00000018932
RefSeq Acc Id: XP_038937499   ⟸   XM_039081571
- Peptide Label: isoform X2
- UniProtKB: D3ZKB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937501   ⟸   XM_039081573
- Peptide Label: isoform X4
- UniProtKB: D3ZKB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937498   ⟸   XM_039081570
- Peptide Label: isoform X1
- UniProtKB: D3ZKB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937500   ⟸   XM_039081572
- Peptide Label: isoform X3
- UniProtKB: D3ZKB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937502   ⟸   XM_039081574
- Peptide Label: isoform X5
- UniProtKB: D3ZKB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001341133   ⟸   NM_001354204
- UniProtKB: D3ZKB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937503   ⟸   XM_039081575
- Peptide Label: isoform X5
- UniProtKB: D3ZKB7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096748   ⟸   ENSRNOT00000113346
RefSeq Acc Id: XP_063121688   ⟸   XM_063265618
- Peptide Label: isoform X6
- UniProtKB: D3ZKB7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105240   ⟸   ENSRNOT00000136080
Ensembl Acc Id: ENSRNOP00000105563   ⟸   ENSRNOT00000156185

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KAM8-F1-model_v2 AlphaFold A0A0G2KAM8 1-1460 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305176 AgrOrtholog
BioCyc Gene G2FUF-29222 BioCyc
Ensembl Genes ENSRNOG00000013841 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018932 ENTREZGENE
  ENSRNOT00000018932.8 UniProtKB/TrEMBL
  ENSRNOT00000079801 ENTREZGENE
  ENSRNOT00000079801.3 UniProtKB/TrEMBL
  ENSRNOT00000113346.2 UniProtKB/TrEMBL
  ENSRNOT00000136080.1 UniProtKB/TrEMBL
  ENSRNOT00000156185 ENTREZGENE
  ENSRNOT00000156185.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  LisH_dimerisation UniProtKB/TrEMBL
  Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  VPRBP/DCAF1 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene 315987 ENTREZGENE
PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 1 UniProtKB/TrEMBL
  PTHR13129 UniProtKB/TrEMBL
PhenoGen Dcaf1 PhenoGen
PROSITE LISH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013841 RatGTEx
SMART LisH UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
  SSF50998 UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
UniProt A0A0G2KAM8_RAT UniProtKB/TrEMBL
  A0A8I6AMF1_RAT UniProtKB/TrEMBL
  A0ABK0L5X1_RAT UniProtKB/TrEMBL
  A0ABK0LL35_RAT UniProtKB/TrEMBL
  D3ZKB7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-15 Dcaf1  DDB1 and CUL4 associated factor 1  Vprbp  Vpr (HIV-1) binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Vprbp  Vpr (HIV-1) binding protein  RGD1305176_predicted  similar to mKIAA0800 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1305176_predicted  similar to mKIAA0800 protein (predicted)  LOC315987_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315987_predicted  similar to mKIAA0800 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL