Tomm70 (translocase of outer mitochondrial membrane 70) - Rat Genome Database

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Gene: Tomm70 (translocase of outer mitochondrial membrane 70) Rattus norvegicus
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Symbol: Tomm70
Name: translocase of outer mitochondrial membrane 70
RGD ID: 1303049
Description: Predicted to enable mitochondrion targeting sequence binding activity and molecular adaptor activity. Predicted to contribute to protein transmembrane transporter activity. Involved in several processes, including negative regulation of cell growth involved in cardiac muscle cell development; positive regulation of protein targeting to mitochondrion; and response to thyroxine. Located in mitochondrial outer membrane. Used to study congestive heart failure. Biomarker of hypothyroidism. Orthologous to human TOMM70 (translocase of outer mitochondrial membrane 70); PARTICIPATES IN alpha-helical insertion pathway of mitochondrial protein import; beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC112570; mitochondrial import receptor subunit TOM70; mitochondrial precursor proteins import receptor; TOM70; Tomm70a; translocase of outer membrane 70 kDa subunit; translocase of outer mitochondrial membrane 70 homolog A; translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae); translocase of outer mitochondrial membrane 70 homolog A (yeast); translocase of outer mitochondrial membrane protein 70
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Tomm70-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81156,847,837 - 56,886,302 (-)NCBIGRCr8
mRatBN7.21143,378,719 - 43,417,166 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1143,377,216 - 43,417,202 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1152,153,913 - 52,192,339 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01144,815,517 - 44,853,943 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01143,939,611 - 43,978,037 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01145,477,053 - 45,511,409 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,480,250 - 45,510,961 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,669,804 - 48,706,365 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41144,302,535 - 44,341,250 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11144,360,417 - 44,398,702 (-)NCBI
Celera1143,168,344 - 43,206,551 (-)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tomm70RatCardiomegaly  IEP 13464131protein:decreased expression:left ventricle myocardium RGD 
Tomm70RatCardiomegaly  ISOTomm70a (Mus musculus)13464131protein:decreased expression:heartRGD 
Tomm70Ratcongestive heart failure  ISOTOMM70 (Homo sapiens)13464131mRNA:decreased expression:heartRGD 
Tomm70Ratcongestive heart failure  IDA 13464132protein:increased serine phosphorylation:heart and mitochondrionRGD 
Tomm70RatExperimental Diabetes Mellitus  IEP 13463486protein:decreased expression:retinaRGD 
Tomm70Rathypothyroidism  IEP 11522362mRNA:increased expression:striatumRGD 
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Tomm70Ratgenetic disease  ISOTOMM70 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tomm70Rat(1->4)-beta-D-glucan multiple interactionsISOTomm70a (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of TOMM70A mRNACTDPMID:36331819
Tomm70Rat(S)-nicotine increases expressionISOTomm70a (Mus musculus)6480464Nicotine results in increased expression of TOMM70A mRNACTDPMID:21955143
Tomm70Rat1,2-dichloroethane decreases expressionISOTomm70a (Mus musculus)6480464ethylene dichloride results in decreased expression of TOMM70A mRNACTDPMID:28960355
Tomm70Rat1,2-dimethylhydrazine multiple interactionsISOTomm70a (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of TOMM70A mRNACTDPMID:22206623
Tomm70Rat1,2-dimethylhydrazine decreases expressionISOTomm70a (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of TOMM70A mRNACTDPMID:22206623
Tomm70Rat17alpha-ethynylestradiol increases expressionISOTomm70a (Mus musculus)6480464Ethinyl Estradiol results in increased expression of TOMM70A mRNACTDPMID:17942748
Tomm70Rat17alpha-ethynylestradiol multiple interactionsISOTomm70a (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TOMM70A mRNACTDPMID:17942748
Tomm70Rat17beta-estradiol multiple interactionsISOTOMM70 (Homo sapiens)6480464Estradiol promotes the reaction [TOMM70A protein binds to ESR1 protein]CTDPMID:27156127
Tomm70Rat17beta-estradiol increases expressionISOTomm70a (Mus musculus)6480464Estradiol results in increased expression of TOMM70A mRNACTDPMID:39298647
Tomm70Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOTomm70a (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TOMM70A mRNACTDPMID:17942748
Tomm70Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOTomm70a (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of TOMM70A mRNACTDPMID:17942748
Tomm70Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of TOMM70 mRNACTDPMID:21346803
Tomm70Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of TOMM70 mRNACTDPMID:21346803
Tomm70Rat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of TOMM70 proteinCTDPMID:34915118
Tomm70Rat4,4'-sulfonyldiphenol increases expressionISOTomm70a (Mus musculus)6480464bisphenol S results in increased expression of TOMM70A mRNACTDPMID:39298647
Tomm70Ratacetamide decreases expressionEXP 6480464acetamide results in decreased expression of TOMM70 mRNACTDPMID:31881176
Tomm70Rataflatoxin B1 decreases expressionISOTomm70a (Mus musculus)6480464Aflatoxin B1 results in decreased expression of TOMM70A mRNACTDPMID:19770486
Tomm70Rataflatoxin B1 decreases methylationISOTOMM70 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of TOMM70A geneCTDPMID:27153756
Tomm70Ratall-trans-retinoic acid decreases expressionISOTomm70a (Mus musculus)6480464Tretinoin results in decreased expression of TOMM70A mRNACTDPMID:16169686
Tomm70Ratall-trans-retinoic acid decreases expressionISOTOMM70 (Homo sapiens)6480464Tretinoin results in decreased expression of TOMM70A mRNACTDPMID:33167477

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Biological Process
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Object Symbol
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Term
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Reference
Notes
Source
Original Reference(s)
Tomm70Ratactivation of innate immune response involved_inISSUniProtKB:O948261600115GO_REF:0000024UniProtGO_REF:0000024
Tomm70Ratactivation of innate immune response involved_inISOTOMM70 (Homo sapiens)1624291 PMID:20628368RGDPMID:20628368
Tomm70Ratactivation of innate immune response involved_inIEAUniProtKB:O94826 and ensembl:ENSP000002843201600115GO_REF:0000107EnsemblGO_REF:0000107
Tomm70Ratcellular response to virus involved_inIEAUniProtKB:O94826 and ensembl:ENSP000002843201600115GO_REF:0000107EnsemblGO_REF:0000107
Tomm70Ratcellular response to virus involved_inISOTOMM70 (Homo sapiens)1624291 PMID:25609812RGDPMID:25609812
Tomm70Ratcellular response to virus involved_inISSUniProtKB:O948261600115GO_REF:0000024UniProtGO_REF:0000024
Tomm70Ratnegative regulation of cell growth involved in cardiac muscle cell development  IMP 13464131 RGD 
Tomm70Ratpositive regulation of defense response to virus by host involved_inISSUniProtKB:O948261600115GO_REF:0000024UniProtGO_REF:0000024
Tomm70Ratpositive regulation of defense response to virus by host involved_inISOTOMM70 (Homo sapiens)1624291 PMID:20628368RGDPMID:20628368
Tomm70Ratpositive regulation of defense response to virus by host involved_inIEAUniProtKB:O94826 and ensembl:ENSP000002843201600115GO_REF:0000107EnsemblGO_REF:0000107
Tomm70Ratpositive regulation of interferon-beta production involved_inISOTOMM70 (Homo sapiens)1624291 PMID:20628368RGDPMID:20628368
Tomm70Ratpositive regulation of interferon-beta production involved_inISSUniProtKB:O948261600115GO_REF:0000024UniProtGO_REF:0000024
Tomm70Ratpositive regulation of interferon-beta production involved_inIEAUniProtKB:O94826 and ensembl:ENSP000002843201600115GO_REF:0000107EnsemblGO_REF:0000107
Tomm70Ratpositive regulation of protein targeting to mitochondrion  IMP 1303951 RGD 
Tomm70Ratprotein import into mitochondrial matrix involved_inIBAPANTHER:PTN002340064 and SGD:S0000050651600115GO_REF:0000033GO_CentralGO_REF:0000033
Tomm70Ratprotein insertion into mitochondrial inner membrane involved_inIBAPANTHER:PTN002340064 and SGD:S0000050651600115GO_REF:0000033GO_CentralGO_REF:0000033
Tomm70Ratprotein targeting to mitochondrion involved_inIMP 13838795PMID:19401463UniProt 
Tomm70Ratregulation of apoptotic process involved_inIEAUniProtKB:O94826 and ensembl:ENSP000002843201600115GO_REF:0000107EnsemblGO_REF:0000107
Tomm70Ratregulation of apoptotic process involved_inISOTOMM70 (Homo sapiens)1624291 PMID:25609812RGDPMID:25609812
Tomm70Ratregulation of apoptotic process involved_inISSUniProtKB:O948261600115GO_REF:0000024UniProtGO_REF:0000024
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Cellular Component
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Object Symbol
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Term
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Evidence
With
Reference
Notes
Source
Original Reference(s)
Tomm70Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Tomm70Ratmitochondrial membrane is_active_inISOTOMM70 (Homo sapiens)1624291 PMID:20628368RGDPMID:20628368
Tomm70Ratmitochondrial membrane is_active_inIEAUniProtKB:O94826 and ensembl:ENSP000002843201600115GO_REF:0000107EnsemblGO_REF:0000107
Tomm70Ratmitochondrial outer membrane is_active_inIBAPANTHER:PTN002340064 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tomm70Ratmitochondrial outer membrane  IDA 1303951 RGD 
Tomm70Ratmitochondrial outer membrane located_inIEAUniProtKB-KW:KW-10001600115GO_REF:0000043UniProtGO_REF:0000043
Tomm70Ratmitochondrial outer membrane located_inIEAUniProtKB-SubCell:SL-01721600115GO_REF:0000044UniProtGO_REF:0000044
Tomm70Ratmitochondrion located_inISOTOMM70 (Homo sapiens)1624291 PMID:20531390 more ...RGDGO_REF:0000052 more ...
Tomm70Ratmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
Tomm70Ratmitochondrion located_inIEAARBA:ARBA000269621600115GO_REF:0000117UniProtGO_REF:0000117
Tomm70Ratmitochondrion located_inISOTomm70a (Mus musculus)1624291 PMID:23303939RGDPMID:23303939
Tomm70Ratmitochondrion located_inIEAUniProtKB:Q9CZW5 and ensembl:ENSMUSP000001291861600115GO_REF:0000107EnsemblGO_REF:0000107
Tomm70Ratmitochondrion located_inIEAUniProtKB:O94826 and ensembl:ENSP000002843201600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function

  

RGD Manual Annotations


  

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#
Reference Title
Reference Citation
1. Identification of a mammalian homologue of the fungal Tom70 mitochondrial precursor protein import receptor as a thyroid hormone-regulated gene in specific brain regions. Alvarez-Dolado M, etal., J Neurochem. 1999 Dec;73(6):2240-9.
2. Mitochondrial targeting of cytochrome P450 proteins containing NH2-terminal chimeric signals involves an unusual TOM20/TOM22 bypass mechanism. Anandatheerthavarada HK, etal., J Biol Chem. 2009 Jun 19;284(25):17352-63. doi: 10.1074/jbc.M109.007492. Epub 2009 Apr 28.
3. Biogenesis of mitochondrial outer membrane proteins, problems and diseases. Ellenrieder L, etal., Biol Chem. 2015 Oct 1;396(11):1199-213. doi: 10.1515/hsz-2015-0170.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Phosphoproteome mapping of cardiomyocyte mitochondria in a rat model of heart failure. Giorgianni F, etal., Mol Cell Biochem. 2014 Apr;389(1-2):159-67. doi: 10.1007/s11010-013-1937-7. Epub 2014 Jan 7.
6. Assembly of beta-barrel proteins in the mitochondrial outer membrane. Hohr AI, etal., Biochim Biophys Acta. 2015 Jan;1853(1):74-88. doi: 10.1016/j.bbamcr.2014.10.006. Epub 2014 Oct 8.
7. Tom70 serves as a molecular switch to determine pathological cardiac hypertrophy. Li J, etal., Cell Res. 2014 Aug;24(8):977-93. doi: 10.1038/cr.2014.94. Epub 2014 Jul 15.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Impaired transport of mitochondrial transcription factor A (TFAM) and the metabolic memory phenomenon associated with the progression of diabetic retinopathy. Santos JM and Kowluru RA, Diabetes Metab Res Rev. 2013 Mar;29(3):204-13. doi: 10.1002/dmrr.2384.
12. Unlocking the presequence import pathway. Schulz C, etal., Trends Cell Biol. 2015 May;25(5):265-75. doi: 10.1016/j.tcb.2014.12.001. Epub 2014 Dec 23.
13. Characterization of rat TOM70 as a receptor of the preprotein translocase of the mitochondrial outer membrane. Suzuki H, etal., J Cell Sci 2002 May 1;115(Pt 9):1895-905.
14. Cooperation of protein machineries in mitochondrial protein sorting. Wenz LS, etal., Biochim Biophys Acta. 2015 May;1853(5):1119-29. doi: 10.1016/j.bbamcr.2015.01.012. Epub 2015 Jan 26.
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PMID:12477932   PMID:14651853   PMID:18570454   PMID:18614015   PMID:19946888   PMID:20531390   PMID:22871113   PMID:23303939   PMID:27919679   PMID:31505169   PMID:32357304  



Tomm70
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81156,847,837 - 56,886,302 (-)NCBIGRCr8
mRatBN7.21143,378,719 - 43,417,166 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1143,377,216 - 43,417,202 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1152,153,913 - 52,192,339 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01144,815,517 - 44,853,943 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01143,939,611 - 43,978,037 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01145,477,053 - 45,511,409 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,480,250 - 45,510,961 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,669,804 - 48,706,365 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41144,302,535 - 44,341,250 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11144,360,417 - 44,398,702 (-)NCBI
Celera1143,168,344 - 43,206,551 (-)NCBICelera
Cytogenetic Map11q12NCBI
TOMM70
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383100,363,431 - 100,401,089 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3100,363,431 - 100,401,089 (-)EnsemblGRCh38hg38GRCh38
GRCh373100,082,275 - 100,119,933 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363101,564,997 - 101,602,915 (-)NCBINCBI36Build 36hg18NCBI36
Build 343101,564,998 - 101,602,915NCBI
Celera398,473,164 - 98,511,084 (-)NCBICelera
Cytogenetic Map3q12.2NCBI
HuRef397,450,096 - 97,488,049 (-)NCBIHuRef
CHM1_13100,045,331 - 100,083,272 (-)NCBICHM1_1
T2T-CHM13v2.03103,068,774 - 103,106,448 (-)NCBIT2T-CHM13v2.0
Tomm70a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391656,942,077 - 56,974,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1656,942,066 - 56,977,068 (+)EnsemblGRCm39 Ensembl
GRCm381657,121,714 - 57,154,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1657,121,703 - 57,156,705 (+)EnsemblGRCm38mm10GRCm38
MGSCv371657,121,827 - 57,154,643 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361657,043,073 - 57,075,889 (+)NCBIMGSCv36mm8
Celera1657,455,013 - 57,487,868 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1634.22NCBI
Tomm70
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554271,876,222 - 1,908,737 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554271,874,277 - 1,908,245 (-)NCBIChiLan1.0ChiLan1.0
TOMM70
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2298,306,633 - 98,344,497 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1398,311,415 - 98,348,981 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0397,459,180 - 97,497,175 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13104,139,473 - 104,177,061 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3104,139,473 - 104,178,074 (-)Ensemblpanpan1.1panPan2
TOMM70
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1336,976,322 - 7,009,618 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl336,976,934 - 7,009,594 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha337,130,612 - 7,165,083 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0337,114,093 - 7,148,576 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl337,114,753 - 7,148,568 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1337,001,694 - 7,036,139 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0337,050,040 - 7,084,498 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0337,379,916 - 7,414,382 (-)NCBIUU_Cfam_GSD_1.0
Tomm70
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602150,008,687 - 150,042,592 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366302,906,581 - 2,940,608 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366302,906,573 - 2,938,837 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOMM70
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13158,577,379 - 158,628,262 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113158,577,026 - 158,629,878 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213168,193,917 - 168,218,856 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TOMM70
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12280,477,429 - 80,516,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2280,477,872 - 80,516,670 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604186,056,352 - 86,094,501 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tomm70
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478913,792,049 - 13,829,104 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478913,792,434 - 13,828,403 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Tomm70
96 total Variants

Predicted Target Of
Summary Value
Count of predictions:167
Count of miRNA genes:119
Interacting mature miRNAs:127
Transcripts:ENSRNOT00000002238
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat

1 to 10 of 17 rows
BF410432  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,417,853 - 43,418,071 (+)MAPPERmRatBN7.2
Rnor_6.01145,511,794 - 45,512,011NCBIRnor6.0
Rnor_5.01148,707,061 - 48,707,278UniSTSRnor5.0
RGSC_v3.41144,341,946 - 44,342,163UniSTSRGSC3.4
Celera1143,207,247 - 43,207,464UniSTS
RH 3.4 Map11325.3UniSTS
Cytogenetic Map11q12UniSTS
RH125842  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,124,978 - 50,125,223 (+)MAPPERmRatBN7.2
mRatBN7.21143,378,778 - 43,379,023 (+)MAPPERmRatBN7.2
Rnor_6.0652,822,334 - 52,822,578NCBIRnor6.0
Rnor_6.01145,477,113 - 45,477,358NCBIRnor6.0
Rnor_5.0662,442,457 - 62,442,701UniSTSRnor5.0
RGSC_v3.41144,302,595 - 44,302,839UniSTSRGSC3.4
Celera649,307,483 - 49,307,727UniSTS
Celera1143,168,404 - 43,168,648UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map11q12UniSTS
AI029154  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,377,273 - 43,377,477 (+)MAPPERmRatBN7.2
Rnor_6.01145,475,608 - 45,475,811NCBIRnor6.0
Rnor_5.01148,668,359 - 48,668,562UniSTSRnor5.0
RGSC_v3.41144,301,090 - 44,301,293UniSTSRGSC3.4
Celera1143,166,899 - 43,167,102UniSTS
RH 3.4 Map11325.3UniSTS
Cytogenetic Map11q12UniSTS
Tomm70a  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,125,428 - 50,126,335 (+)MAPPERmRatBN7.2
Rnor_6.0652,822,784 - 52,823,690NCBIRnor6.0
Rnor_5.0662,442,907 - 62,443,813UniSTSRnor5.0
RGSC_v3.4651,873,209 - 51,874,115UniSTSRGSC3.4
Celera649,307,933 - 49,308,839UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map11q12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000002238   ⟹   ENSRNOP00000002238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,377,216 - 43,417,202 (-)Ensembl
Rnor_6.0 Ensembl1145,480,250 - 45,510,961 (-)Ensembl
RefSeq Acc Id: NM_212519   ⟹   NP_997684
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,847,837 - 56,886,276 (-)NCBI
mRatBN7.21143,378,719 - 43,417,158 (-)NCBI
Rnor_6.01145,477,053 - 45,511,098 (-)NCBI
Rnor_5.01148,669,804 - 48,706,365 (-)NCBI
RGSC_v3.41144,302,535 - 44,341,250 (-)RGD
Celera1143,168,344 - 43,206,551 (-)RGD
Sequence:
RefSeq Acc Id: XM_008768645   ⟹   XP_008766867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,854,467 - 56,886,302 (-)NCBI
mRatBN7.21143,385,372 - 43,417,166 (-)NCBI
Rnor_6.01145,483,825 - 45,511,408 (-)NCBI
Sequence:
1 to 10 of 10 rows
Protein RefSeqs NP_997684 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766867 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98640 (Get FASTA)   NCBI Sequence Viewer  
  BAD11366 (Get FASTA)   NCBI Sequence Viewer  
  EDM11035 (Get FASTA)   NCBI Sequence Viewer  
  EDM11036 (Get FASTA)   NCBI Sequence Viewer  
  EDM11037 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002238
  ENSRNOP00000002238.6
GenBank Protein Q75Q39 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_997684   ⟸   NM_212519
- UniProtKB: Q75Q39 (UniProtKB/Swiss-Prot),   A6IQN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766867   ⟸   XM_008768645
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000002238   ⟸   ENSRNOT00000002238

Name Modeler Protein Id AA Range Protein Structure
AF-Q75Q39-F1-model_v2 AlphaFold Q75Q39 1-610 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-21537 BioCyc
Ensembl Genes ENSRNOG00000001640 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000002238 ENTREZGENE
  ENSRNOT00000002238.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7099109 IMAGE-MGC_LOAD
InterPro TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
  TPR_repeat UniProtKB/Swiss-Prot
KEGG Report rno:304017 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112570 IMAGE-MGC_LOAD
NCBI Gene 304017 ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM70 UniProtKB/Swiss-Prot
  MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM70 UniProtKB/Swiss-Prot
Pfam TPR_1 UniProtKB/Swiss-Prot
  TPR_6 UniProtKB/Swiss-Prot
  TPR_8 UniProtKB/Swiss-Prot
PhenoGen Tomm70 PhenoGen
PROSITE TPR UniProtKB/Swiss-Prot
  TPR_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001640 RatGTEx
SMART TPR UniProtKB/Swiss-Prot
Superfamily-SCOP Protein prenylyltransferase UniProtKB/Swiss-Prot
  SSF48452 UniProtKB/Swiss-Prot
UniProt A6IQN3 ENTREZGENE, UniProtKB/TrEMBL
  Q75Q39 ENTREZGENE
  R9PXR4_RAT UniProtKB/TrEMBL
  TOM70_RAT UniProtKB/Swiss-Prot
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Tomm70  translocase of outer mitochondrial membrane 70  Tomm70a  translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-15 Tomm70a  translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)  Tomm70a  translocase of outer mitochondrial membrane 70 homolog A (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Tomm70a  translocase of outer mitochondrial membrane 70 homolog A (yeast)    translocase of outer mitochondrial membrane 70 homolog A  Name updated 1299863 APPROVED
2005-01-06 Tomm70a  translocase of outer mitochondrial membrane 70 homolog A  TOM70  TOM70 protein  Symbol and Name updated 1299863 APPROVED