Tomm70-ps1 (translocase of outer mitochondrial membrane 70, pseudogene 1) - Rat Genome Database

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Gene: Tomm70-ps1 (translocase of outer mitochondrial membrane 70, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Tomm70-ps1
Name: translocase of outer mitochondrial membrane 70, pseudogene 1
RGD ID: 1595482
Description:
Type: pseudo (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: LOC680142; similar to translocase of outer mitochondrial membrane 70 homolog A
Related Functional Gene: Tomm70  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8655,852,328 - 55,854,571 (-)NCBIGRCr8
mRatBN7.2650,124,911 - 50,127,154 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl650,125,213 - 50,127,038 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0652,822,266 - 52,824,509 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl652,822,568 - 52,824,393 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0662,442,389 - 62,444,632 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4651,872,506 - 51,874,331 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera649,307,415 - 49,309,678 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Tomm70-ps1
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:89
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000014668
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat

Markers in Region
RH125842  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,124,978 - 50,125,223 (+)MAPPERmRatBN7.2
mRatBN7.21143,378,778 - 43,379,023 (+)MAPPERmRatBN7.2
Rnor_6.0652,822,334 - 52,822,578NCBIRnor6.0
Rnor_6.01145,477,113 - 45,477,358NCBIRnor6.0
Rnor_5.0662,442,457 - 62,442,701UniSTSRnor5.0
RGSC_v3.41144,302,595 - 44,302,839UniSTSRGSC3.4
Celera649,307,483 - 49,307,727UniSTS
Celera1143,168,404 - 43,168,648UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map11q12UniSTS
Tomm70a  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,125,428 - 50,126,335 (+)MAPPERmRatBN7.2
Rnor_6.0652,822,784 - 52,823,690NCBIRnor6.0
Rnor_5.0662,442,907 - 62,443,813UniSTSRnor5.0
RGSC_v3.4651,873,209 - 51,874,115UniSTSRGSC3.4
Celera649,307,933 - 49,308,839UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map11q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 29 31 26 8 26 2 74 25 39 2
Low 14 26 15 11 15 8 9 10 2 9 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000014668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl650,125,213 - 50,127,038 (-)Ensembl
Rnor_6.0 Ensembl652,822,568 - 52,824,393 (-)Ensembl
RefSeq Acc Id: XR_146030
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0652,822,266 - 52,824,509 (-)NCBI
Rnor_5.0662,442,389 - 62,444,632 (-)NCBI
Sequence:
RefSeq Acc Id: XR_147016
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera649,307,415 - 49,309,678 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-37830 BioCyc
Ensembl Genes ENSRNOG00000011040 Ensembl, ENTREZGENE
NCBI Gene 680142 ENTREZGENE
PhenoGen Tomm70-ps1 PhenoGen
RatGTEx ENSRNOG00000011040 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Tomm70-ps1  translocase of outer mitochondrial membrane 70, pseudogene 1  LOC680142  similar to translocase of outer mitochondrial membrane 70 homolog A  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC680142  similar to translocase of outer mitochondrial membrane 70 homolog A  LOC686943  similar to translocase of outer mitochondrial membrane 70 homolog A  Data merged from RGD:1591277 1643240 APPROVED
2006-11-20 LOC680142  similar to translocase of outer mitochondrial membrane 70 homolog A      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686943  similar to translocase of outer mitochondrial membrane 70 homolog A      Symbol and Name status set to provisional 70820 PROVISIONAL