nctm1_m QTL Report (Mus musculus) - Rat Genome Database

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QTL Registration

QTL: nctm1_m (Nakano cataract modifier 1 (mouse)) Mus musculus

Symbol: nctm1_m
Name: Nakano cataract modifier 1 (mouse)
RGD ID: 1301277
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm39397,698,638 - 100,373,060MOUSEQTLGRCm39
GRCm38397,791,322 - 100,465,744MOUSEQTLGRCm38
MGSCv37380,083,059 - 114,083,208 (+)MOUSEQTLGRCm37
MGSCv3382,052,010 - 118,052,010RGD
cM Map342.04MOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
Additional References at PubMed
PMID:12470976  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1620696Pde4dipphosphodiesterase 4D interacting protein (myomegalin)39759714497796023Mouse
329964475LOC131338584STARR-seq mESC enhancer starr_0847539778188997782682Mouse
401839240LOC132409650STARR-positive B cell enhancer ABC_E456439780826997808570Mouse
1320629Sec22bSEC22 homolog B, vesicle trafficking protein39780854397829634Mouse
163697296LOC128924850CapStarr-seq enhancer MGSCv37_chr3:97732943-9773312639783633697836519Mouse
1617922Gm5544predicted gene 554439783748997874334Mouse
401839838LOC132409651STARR-positive B cell enhancer ABC_E345239783953097839831Mouse
163678498LOC128924851CapStarr-seq enhancer MGSCv37_chr3:97737302-9773741139784069597840804Mouse
39129569LOC110120381VISTA enhancer mm57639784922797850203Mouse
401836571LOC132409652STARR-positive B cell enhancer ABC_E608739787847897878779Mouse
401840043LOC132409653STARR-positive B cell enhancer ABC_E345339792059997920900Mouse
736047Notch2notch 239792085498057683Mouse
10036164Gm40103predicted gene, 4010339792962297933424Mouse
329967005LOC131338585STARR-seq mESC enhancer starr_0847839799303597993594Mouse
401833386LOC132409654STARR-positive B cell enhancer mm9_chr3:97961638-9796193939806503198065332Mouse
1314449Adam30a disintegrin and metallopeptidase domain 3039806795098071485Mouse
2312085Gm9771predicted gene 977139809708298098461Mouse
10004590Gm40104predicted gene, 4010439810966398114076Mouse
1553892Reg4regenerating islet-derived family, member 439812945498144064Mouse
10713Hmgcs23-hydroxy-3-methylglutaryl-Coenzyme A synthase 239818774798218054Mouse
163682384LOC128924852CapStarr-seq enhancer MGSCv37_chr3:98084906-9808510739818829998188500Mouse
163696703LOC128924853CapStarr-seq enhancer MGSCv37_chr3:98085228-9808542939818862198188822Mouse
62279Phgdh3-phosphoglycerate dehydrogenase39822048798247285Mouse
401834756LOC132409655STARR-positive B cell enhancer ABC_E456539824467798244978Mouse
401841985LOC132409656STARR-positive B cell enhancer ABC_E1120339824712598247425Mouse
401838707LOC132409657STARR-positive B cell enhancer ABC_E793239825537998255680Mouse
9626843Gm31420predicted gene, 3142039825759198262661Mouse
1553642Zfp697zinc finger protein 69739828927898508893Mouse
163703201LOC128924854CapStarr-seq enhancer MGSCv37_chr3:98210571-9821077239831396498314290Mouse
2307758Hsd3b9hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 939835299198364833Mouse
5142340Gm19210predicted gene, 1921039837680798380522Mouse
1615186Hsd3b4hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 439840638798417895Mouse
5142345Gm19211predicted gene, 1921139843026498433999Mouse
2307760Hsd3b8hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 839845985898471366Mouse
1617127Gm5853predicted gene 585339848708098487886Mouse
2309237Gm9678predicted gene 967839848846998495606Mouse
1553473Hsd3b5hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 539852595298552850Mouse
329965369LOC131338586STARR-seq mESC enhancer starr_0848039855014298551252Mouse
5146840Gm12399predicted gene 1239939857718998579609Mouse
2311989Gm12400predicted gene 1240039858796298595601Mouse
1615188Hsd3b2hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 239861842398631859Mouse
329966715LOC131338587STARR-seq mESC enhancer starr_0848139864093798642983Mouse
1615187Hsd3b3hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 339864879298672465Mouse
1615185Hsd3b6hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 639871282098721759Mouse
2295416Gm12428predicted gene 1242839872816898729972Mouse
1318589Hsd3b1hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 139874967298767110Mouse
733654Hao2hydroxyacid oxidase 239878183598802692Mouse
9634469Gm31880predicted gene, 3188039880514298839837Mouse
9672561Gm12440predicted gene 1244039895713898961058Mouse
2311988Gm12441predicted gene 1244139900798399008470Mouse
10038423Gm40105predicted gene, 4010539901827599023011Mouse
14999330Gm22341predicted gene, 2234139902047199020599Mouse
15003025Gm24216predicted gene, 2421639903150299031618Mouse
1318472Wars2tryptophanyl tRNA synthetase 2 (mitochondrial)39904742399128546Mouse
401839005LOC132409658STARR-positive B cell enhancer ABC_E208939904851399048814Mouse
5142568Gm18982predicted gene, 1898239908807199088705Mouse
329964511LOC131338588STARR-seq mESC enhancer starr_0848439910288199104183Mouse
9626709Mir6481microRNA 648139910666099106769Mouse
10020343Gm38468predicted gene, 3846839914419999146533Mouse
1557550Tbx15T-box 1539914767199261576Mouse
12794794Gm46817predicted gene, 4681739914797199148901Mouse
39128871LOC109279999VISTA enhancer mm88839916709599170880Mouse
15020376Gm52611predicted gene, 5261139925640199259159Mouse
329967151LOC131338589STARR-seq mESC enhancer starr_0848539927129499272626Mouse
39129471Gm54211predicted gene, 5421139932316499324990Mouse
15002367Gm12449predicted gene 1244939937083399371141Mouse
1612754M6pr-psmannose-6-phosphate receptor, pseudogene39940748699409932Mouse
329961947LOC131338590STARR-seq mESC enhancer starr_0848639941541999417115Mouse
14998003Gm22505predicted gene, 2250539961505699615163Mouse
329966287LOC131338591STARR-seq mESC enhancer starr_0848739962314899624509Mouse
329966953LOC131338592STARR-seq mESC enhancer starr_0848839963177499632885Mouse
329962374LOC131338593STARR-seq mESC enhancer starr_0848939964531499646701Mouse
1622249Spag17sperm associated antigen 17399792653100050638Mouse
2294750Rpl36-ps7ribosomal protein L36, pseudogene 739991564099916048Mouse
329968940LOC131338594STARR-seq mESC enhancer starr_0849039994169499942749Mouse
329968807LOC131338595STARR-seq mESC enhancer starr_084913100038578100040255Mouse
1316700Wdr3WD repeat domain 33100045496100069723Mouse
401832043LOC132409659STARR-positive B cell enhancer ABC_E60883100069616100069917Mouse
1314446Gdap2ganglioside-induced differentiation-associated-protein 23100069843100117909Mouse
15001664Gm25802predicted gene, 258023100210604100210680Mouse
329963961LOC131338596STARR-seq mESC enhancer starr_084943100219891100221506Mouse
329963381LOC131338597STARR-seq mESC enhancer starr_084953100301636100303010Mouse
2295061Gm12464predicted gene 124643100320863100322093Mouse
9641942Gm32471predicted gene, 324713100325253100329394Mouse
16087364930406D18RikRIKEN cDNA 4930406D18 gene3100333721100345070Mouse
401839013LOC132409660STARR-positive B cell enhancer ABC_E26773100344139100344440Mouse
401835802LOC132409661STARR-positive B cell enhancer ABC_E117113100345249100345549Mouse
401832624LOC132409662STARR-positive B cell enhancer ABC_E92213100349977100350277Mouse
401840030LOC132409663STARR-positive B cell enhancer ABC_E34543100351386100351687Mouse
10039882Gm38530predicted gene, 385303100358937100366892Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1301277nctm1_mNakano cataract modifier 1 (mouse)Not determined397698638100373060Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:2451367

RGD Curation Notes
Note Type Note Reference