Rps4x (ribosomal protein S4, X-linked)

Gene: Rps4x (ribosomal protein S4, X-linked) Rattus norvegicus

Analyze

Symbol:

Rps4x (Ensembl: Rps4x-ps9)

Name:

ribosomal protein S4, X-linked (Ensembl:ribosomal protein S4, X-linked, pseudogene 9)

RGD ID:

2324318

Description:

Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in response to ethanol. Located in ribosome. Orthologous to human RPS4X (ribosomal protein S4 X-linked); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2-nitrofluorene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

40S ribosomal protein S4, X isoform; LOC100362640; ribosomal protein S4, X-linked X-like; small ribosomal subunit protein eS4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPS4X (ribosomal protein S4 X-linked)	RGD	RGD
Mus musculus (house mouse):	Rps4x (ribosomal protein S4, X-linked)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Rps4x (ribosomal protein S4 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPS4X (ribosomal protein S4 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPS4X (ribosomal protein S4 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rps4x (ribosomal protein S4 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPS4X (ribosomal protein S4 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPS4X (ribosomal protein S4 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rps4x (ribosomal protein S4 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RPS4Y1 (ribosomal protein S4 Y-linked 1)	HGNC	HomoloGene, Panther, Treefam
Homo sapiens (human):	RPS4Y2 (ribosomal protein S4 Y-linked 2)	HGNC	Panther
Alliance orthologs ³
Mus musculus (house mouse):	Rps4x (ribosomal protein S4, X-linked)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RPS4X (ribosomal protein S4 X-linked)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rps4x (ribosomal protein S4 X-linked)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rps-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPS4A	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPS4B	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RpS4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rps4x	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)

Related Pseudogenes:

Rps4x-ps1 Rps4x-ps2 Rps4x-ps3 Rps4x-ps4 Rps4x-ps5 Rps4x-ps6 Rps4x-ps7 Rps4x-ps8 Rps4x-ps9

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	71,338,478 - 71,342,921 (-)	NCBI		GRCr8
mRatBN7.2	X	67,298,522 - 67,302,965 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	37,758,363 - 37,759,291 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	X	67,298,525 - 67,303,019 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	68,781,890 - 68,786,333 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	72,282,128 - 72,286,571 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	69,843,249 - 69,847,692 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	72,074,108 - 72,078,551 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	72,074,108 - 72,078,551 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	4	35,729,628 - 35,730,599 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	72,916,030 - 72,920,452 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	90,249,368 - 90,253,817 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	67,652,304 - 67,656,747 (-)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Breast Neoplasms (ISO)

genetic disease (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

2-nitrofluorene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,3'-diindolylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (EXP)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenic trichloride (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

bleomycin A5 (ISO)

Brodifacoum (EXP)

CGP 52608 (ISO)

chloropicrin (ISO)

choline (ISO)

cisplatin (EXP,ISO)

clofibrate (ISO)

crocidolite asbestos (ISO)

dibutyl phthalate (EXP)

dichlorine (EXP)

diethylstilbestrol (EXP)

disodium selenite (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

ivermectin (ISO)

L-methionine (ISO)

lead(0) (ISO)

methapyrilene (EXP)

N-nitrosodimethylamine (EXP)

ozone (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

piperonyl butoxide (EXP)

pirinixic acid (EXP)

potassium dichromate (ISO)

rotenone (EXP)

SB 431542 (ISO)

Soman (EXP)

sunitinib (ISO)

tetrachloromethane (EXP)

trichloroethene (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of cell population proliferation (ISO)

positive regulation of translation (ISO)

response to ethanol (IEP)

ribosomal small subunit biogenesis (ISO,ISS)

translation (IBA,IEA,ISO)

Cellular Component

cytoplasmic ribonucleoprotein granule (ISO)

cytosolic ribosome (ISO)

cytosolic small ribosomal subunit (IBA,ISO)

nucleolus (IEA)

ribonucleoprotein complex (IEA,ISO,ISS)

ribosome (IDA,IEA,ISO,ISS)

small ribosomal subunit (ISO)

small-subunit processome (ISO,ISS)

synapse (ISO)

Molecular Function

protein binding (ISO)

RNA binding (IBA)

rRNA binding (IEA)

structural constituent of ribosome (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Structures of the human and Drosophila 80S ribosome.	Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Effect of ethanol on hepatic ribosomal proteins and mRNA.	Haviryaji KS, etal., Mol Cell Biochem. 1992 Oct 7;115(2):143-7.
4.	Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits.	O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:1795030	PMID:2207170	PMID:2660908	PMID:8139551	PMID:8358435	PMID:8706699	PMID:12477932	PMID:15057822	PMID:15121898	PMID:15489334	PMID:15883184	PMID:16635246
PMID:17289661	PMID:19946888	PMID:20458337	PMID:21423176	PMID:21700703	PMID:22658674	PMID:22681889	PMID:23376485	PMID:23979707	PMID:24625528	PMID:26316108	PMID:29476059
PMID:30053369	PMID:35352799

Genomics

Comparative Map Data

Rps4x
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	71,338,478 - 71,342,921 (-)	NCBI		GRCr8
mRatBN7.2	X	67,298,522 - 67,302,965 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	37,758,363 - 37,759,291 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	X	67,298,525 - 67,303,019 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	68,781,890 - 68,786,333 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	72,282,128 - 72,286,571 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	69,843,249 - 69,847,692 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	72,074,108 - 72,078,551 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	72,074,108 - 72,078,551 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	4	35,729,628 - 35,730,599 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	72,916,030 - 72,920,452 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	90,249,368 - 90,253,817 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	67,652,304 - 67,656,747 (-)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

RPS4X
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	72,272,042 - 72,277,248 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	72,255,679 - 72,277,248 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	71,491,892 - 71,497,098 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	71,409,178 - 71,413,866 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	71,275,474 - 71,280,162	NCBI
Celera	X	71,835,666 - 71,840,357 (-)	NCBI		Celera
Cytogenetic Map	X	q13.1	NCBI
HuRef	X	65,247,573 - 65,252,264 (-)	NCBI		HuRef
CHM1_1	X	71,385,460 - 71,390,151 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	70,704,936 - 70,710,145 (-)	NCBI		T2T-CHM13v2.0

Rps4x
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	101,228,548 - 101,232,929 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	101,228,547 - 101,233,000 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	102,184,941 - 102,189,391 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	102,184,941 - 102,189,394 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	99,380,282 - 99,384,645 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	98,387,662 - 98,392,025 (-)	NCBI		MGSCv36	mm8
Celera	X	89,097,025 - 89,101,322 (-)	NCBI		Celera
Cytogenetic Map	X	D	NCBI
cM Map	X	45.2	NCBI

Rps4x
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955475	11,655,813 - 11,662,391 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955475	11,656,537 - 11,661,803 (-)	NCBI	ChiLan1.0	ChiLan1.0

RPS4X
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	71,945,744 - 71,950,505 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	71,949,351 - 71,954,112 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	61,508,955 - 61,513,689 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	71,593,324 - 71,598,042 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	71,593,324 - 71,598,042 (-)	Ensembl	panpan1.1		panPan2

RPS4X
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	56,290,914 - 56,296,267 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	56,182,729 - 56,296,274 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	47,117,017 - 47,122,368 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	57,345,348 - 57,350,715 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	57,345,348 - 57,350,715 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	55,253,287 - 55,258,639 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	56,663,284 - 56,668,634 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	56,505,786 - 56,511,141 (-)	NCBI		UU_Cfam_GSD_1.0

Rps4x
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	45,610,931 - 45,615,597 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936762	1,364,318 - 1,367,945 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936762	1,364,238 - 1,368,858 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPS4X
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	58,149,318 - 58,155,157 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	58,149,302 - 58,155,179 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	65,859,070 - 65,864,948 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPS4X
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	62,093,900 - 62,098,528 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	62,093,902 - 62,097,466 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	3,946,458 - 3,951,121 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rps4x
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624903	2,506,467 - 2,516,296 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624903	2,511,238 - 2,516,401 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rps4x
1 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	35
Count of miRNA genes:	22
Interacting mature miRNAs:	24
Transcripts:	ENSRNOT00000004278, ENSRNOT00000051149
Prediction methods:	Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	41304447	112935181	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	65612192	120568734	Rat

Markers in Region

G36435

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	67,302,714 - 67,302,867 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	72,078,301 - 72,078,453	NCBI	Rnor6.0
Rnor_5.0	X	72,920,223 - 72,920,375	UniSTS	Rnor5.0
RGSC_v3.4	X	90,253,567 - 90,253,719	UniSTS	RGSC3.4
Celera	X	67,656,497 - 67,656,649	UniSTS

GDB:194748

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	37,758,608 - 37,759,229 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	35,729,855 - 35,730,475	NCBI	Rnor6.0
Rnor_5.0	4	35,587,475 - 35,588,095	UniSTS	Rnor5.0
RGSC_v3.4	4	34,793,919 - 34,794,539	UniSTS	RGSC3.4
Celera	4	33,242,496 - 33,243,116	UniSTS
Cytogenetic Map	X	q31	UniSTS

GDB:194747

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	67,301,536 - 67,301,970 (+)	MAPPER	mRatBN7.2
mRatBN7.2	4	37,759,098 - 37,759,229 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	35,730,345 - 35,730,475	NCBI	Rnor6.0
Rnor_6.0	X	72,077,123 - 72,077,556	NCBI	Rnor6.0
Rnor_5.0	4	35,587,965 - 35,588,095	UniSTS	Rnor5.0
Rnor_5.0	X	72,919,045 - 72,919,478	UniSTS	Rnor5.0
RGSC_v3.4	X	90,252,389 - 90,252,822	UniSTS	RGSC3.4
RGSC_v3.4	4	34,794,409 - 34,794,539	UniSTS	RGSC3.4
Celera	4	33,242,986 - 33,243,116	UniSTS
Celera	X	67,655,319 - 67,655,752	UniSTS
Cytogenetic Map	X	q31	UniSTS

G36434

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	67,302,794 - 67,302,914 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	72,078,381 - 72,078,500	NCBI	Rnor6.0
Rnor_5.0	X	72,920,303 - 72,920,422	UniSTS	Rnor5.0
RGSC_v3.4	X	90,253,647 - 90,253,766	UniSTS	RGSC3.4
Celera	X	67,656,577 - 67,656,696	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High	1		4	4	2	4			2	2	9	1
Medium	4	66	66	50	20	50	8	12	95	44	47	12	8
Low	1	12	29	23	13	23	3	5	44	17	23	5	3
Below cutoff		7	15	5	3	5	5	5	6	7	1	4	5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07039214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN800320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000004278 ⟹ ENSRNOP00000004278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	67,298,525 - 67,302,922 (-)	Ensembl
Rnor_6.0 Ensembl	X	72,074,202 - 72,077,590 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000051149 ⟹ ENSRNOP00000043988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	37,758,363 - 37,759,291 (-)	Ensembl
Rnor_6.0 Ensembl	4	35,729,628 - 35,730,599 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	72,075,740 - 72,078,495 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076978 ⟹ ENSRNOP00000067969

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	67,298,525 - 67,303,019 (-)	Ensembl
Rnor_6.0 Ensembl	X	72,074,108 - 72,078,551 (-)	Ensembl

RefSeq Acc Id:

NM_001007600 ⟹ NP_001007601

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	71,338,478 - 71,342,921 (-)	NCBI
mRatBN7.2	X	67,298,522 - 67,302,965 (-)	NCBI
Rnor_6.0	X	72,074,108 - 72,078,551 (-)	NCBI
Celera	X	67,652,304 - 67,656,747 (-)	NCBI

Sequence:

show sequence

CTCCGACCCTAATTTCTTCGTTCGCCGGAAGAAGGCGAGTCTCTTTCCGTTCCCAGCGCAGCCA
TGGCTCGTGGTCCCAAGAAACATCTGAAGCGCGTAGCGGCTCCAAAACACTGGATGCTGGATAA
GCTGACTGGCGTGTTTGCTCCTCGTCCATCCACTGGTCCACACAAACTGAGGGAATGCCTGCCT
CTGATCATTTTCCTAAGGAACAGACTTAAGTATGCCCTGACTGGAGATGAAGTAAAAAAGATTT
GCATGCAGCGATTCATTAAGATTGATGGGAAAGTCAGGACCGATATAACCTACCCTGCTGGGTT
TATGGATGTCATCAGCATTGACAAGACTGGAGAGAACTTCCGTCTGATCTATGACACCAAGGGT
CGCTTTGCTGTTCATCGAATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGA
TCTTTGTGGGCACAAAAGGAATCCCACATCTGGTGACCCATGATGCCCGTACTATTCGATACCC
TGATCCCCTCATCAAGGTGAATGACACCATTCAGATTGATTTGGAAACAGGCAAGATAACTGAT
TTCATCAAGTTCGACACTGGGAACCTGTGTATGGTGACTGGAGGTGCTAACTTGGGGAGAATTG
GTGTAATCACCAATAGGGAGAGACATCCTGGCTCTTTTGATGTGGTTCATGTGAAAGATGCCAA
CGGCAACAGCTTTGCCACTCGTCTTTCCAACATTTTTGTTATTGGCAAGGGCAACAAACCGTGG
ATTTCTCTTCCCCGAGGAAAAGGAATCCGCCTTACCATTGCTGAAGAGAGAGACAAGAGGCTAG
CAGCCAAACAGAGCAGTGGGTGAAATGGTCTCTAGGAGACATGCTGGAGGAGTATTTGTACTCA
ACACAACAAGCCTTTCTAAGCAACATGCTAGATTAAACAGCATGATGAAATCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001007601	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86560	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004278.6
	ENSRNOP00000043988
	ENSRNOP00000043988.3
	ENSRNOP00000067969
	ENSRNOP00000067969.2
GenBank Protein	P62703	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001007601 ⟸ NM_001007600

- UniProtKB:

P62703 (UniProtKB/Swiss-Prot), A6IQE4 (UniProtKB/TrEMBL), A0A8L2QYQ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI
CMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRK
IFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRI
GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRL
AAKQSSG

hide sequence

RefSeq Acc Id:

ENSRNOP00000004278 ⟸ ENSRNOT00000004278

RefSeq Acc Id:

ENSRNOP00000043988 ⟸ ENSRNOT00000051149

RefSeq Acc Id:

ENSRNOP00000067969 ⟸ ENSRNOT00000076978

Protein Domains

RNA-binding S4 S4 RNA-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P62703-F1-model_v2	AlphaFold	P62703	1-263	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701886

Promoter ID:

EPDNEW_R12407

Type:

multiple initiation site

Name:

Rps4x_2

Description:

ribosomal protein S4, X-linked

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R3402

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	72,078,511 - 72,078,571	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2324318	AgrOrtholog
BioCyc Gene	G2FUF-2079	BioCyc
Ensembl Genes	ENSRNOG00000003201	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000029574	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004278.7	UniProtKB/TrEMBL
	ENSRNOT00000051149	UniProtKB/TrEMBL
	ENSRNOT00000051149.3	UniProtKB/Swiss-Prot
	ENSRNOT00000076978	ENTREZGENE
	ENSRNOT00000076978.4	UniProtKB/TrEMBL
Gene3D-CATH	2.30.30.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.40.50.740	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.10.290.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	40S_S4_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KOW	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KOW_RPS4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Rib_L2_dom2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S4e	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S4e_central_region	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S4e_central_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S4e_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S4e_N_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	S4_RNA-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	S4_RNA-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:100362640	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	100362640	ENTREZGENE
PANTHER	40S RIBOSOMAL PROTEIN S4, X ISOFORM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11581	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	40S_S4_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KOW	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S4e	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RS4NT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rps4x	PhenoGen
PIRSF	Ribosomal_S4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	PS50889	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RIBOSOMAL_S4E	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003201	RatGTEx
	ENSRNOG00000029574	RatGTEx
SMART	SM00363	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0H2UHX3_RAT	UniProtKB/TrEMBL
	A0A8L2QYQ1	ENTREZGENE, UniProtKB/TrEMBL
	A6IQE4	ENTREZGENE, UniProtKB/TrEMBL
	P62703	ENTREZGENE, UniProtKB/Swiss-Prot
	X1WI37_RAT	UniProtKB/TrEMBL
UniProt Secondary	P12631	UniProtKB/Swiss-Prot
	P12750	UniProtKB/Swiss-Prot
	P27576	UniProtKB/Swiss-Prot
	P55831	UniProtKB/Swiss-Prot
	Q14727	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-04-08	Rps4x	ribosomal protein S4, X-linked	LOC100362640	ribosomal protein S4, X-linked X-like	Name and Symbol changed	629549	APPROVED
2010-05-06	LOC100362640	ribosomal protein S4, X-linked X-like			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations