Cenpn (centromere protein N) - Rat Genome Database

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Gene: Cenpn (centromere protein N) Rattus norvegicus
Analyze
Symbol: Cenpn
Name: centromere protein N
RGD ID: 1310953
Description: Predicted to be involved in CENP-A containing chromatin assembly and chromosome segregation. Predicted to be located in nucleus. Predicted to be part of inner kinetochore. Predicted to be active in nucleoplasm. Orthologous to human CENPN (centromere protein N); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CENP-N; Da2-27; Da2-4; LOC361416; MGC94524; RGD1310953; similar to RIKEN cDNA 2610510J17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81961,880,101 - 61,902,850 (+)NCBIGRCr8
mRatBN7.21944,971,265 - 44,994,019 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1944,968,308 - 44,994,012 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1951,781,277 - 51,803,785 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01952,434,293 - 52,456,801 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01954,678,533 - 54,701,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01949,457,461 - 49,479,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1949,340,184 - 49,479,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01960,248,687 - 60,271,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41947,029,240 - 47,051,557 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11947,034,120 - 47,056,438 (+)NCBI
Celera1944,244,906 - 44,267,223 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
inner kinetochore  (ISO)
nucleoplasm  (IBA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Cenpn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81961,880,101 - 61,902,850 (+)NCBIGRCr8
mRatBN7.21944,971,265 - 44,994,019 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1944,968,308 - 44,994,012 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1951,781,277 - 51,803,785 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01952,434,293 - 52,456,801 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01954,678,533 - 54,701,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01949,457,461 - 49,479,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1949,340,184 - 49,479,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01960,248,687 - 60,271,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41947,029,240 - 47,051,557 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11947,034,120 - 47,056,438 (+)NCBI
Celera1944,244,906 - 44,267,223 (+)NCBICelera
Cytogenetic Map19q12NCBI
CENPN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381681,007,214 - 81,033,107 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1681,006,552 - 81,033,114 (+)EnsemblGRCh38hg38GRCh38
GRCh371681,040,819 - 81,066,712 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361679,597,604 - 79,624,213 (+)NCBINCBI36Build 36hg18NCBI36
Celera1665,338,504 - 65,365,102 (+)NCBICelera
Cytogenetic Map16q23.2NCBI
HuRef1666,796,979 - 66,823,593 (+)NCBIHuRef
CHM1_11682,451,471 - 82,478,069 (+)NCBICHM1_1
T2T-CHM13v2.01687,068,448 - 87,094,631 (+)NCBIT2T-CHM13v2.0
Cenpn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398117,648,448 - 117,668,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8117,648,469 - 117,668,246 (+)EnsemblGRCm39 Ensembl
GRCm388116,921,716 - 116,941,504 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8116,921,730 - 116,941,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv378119,445,640 - 119,465,403 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368119,807,717 - 119,827,480 (+)NCBIMGSCv36mm8
Celera8121,141,125 - 121,160,889 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map863.34NCBI
Cenpn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555223,804,578 - 3,818,885 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555223,801,856 - 3,818,675 (+)NCBIChiLan1.0ChiLan1.0
CENPN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21890,757,576 - 90,783,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11696,677,054 - 96,703,229 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01661,611,724 - 61,639,253 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11681,039,744 - 81,067,931 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1681,039,744 - 81,067,919 (+)Ensemblpanpan1.1panPan2
CENPN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1570,798,322 - 70,820,927 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl570,798,886 - 70,820,960 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha570,747,277 - 70,769,889 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0571,103,374 - 71,125,973 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl571,103,360 - 71,125,991 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1571,045,807 - 71,068,461 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0570,881,061 - 70,903,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0571,358,593 - 71,381,205 (-)NCBIUU_Cfam_GSD_1.0
Cenpn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934930,886,647 - 30,905,934 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647528,683,233 - 28,702,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl67,227,990 - 7,254,891 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.167,227,981 - 7,254,927 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CENPN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1566,459,008 - 66,483,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl566,464,569 - 66,483,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660479,351,423 - 9,376,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cenpn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247466,306,521 - 6,330,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247466,309,194 - 6,331,152 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cenpn
93 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:324
Count of miRNA genes:133
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000015158, ENSRNOT00000042458
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat

Markers in Region
AI136171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21944,993,434 - 44,993,570 (+)MAPPERmRatBN7.2
Rnor_6.01949,479,412 - 49,479,547NCBIRnor6.0
Rnor_5.01960,270,717 - 60,270,852UniSTSRnor5.0
RGSC_v3.41947,050,980 - 47,051,115UniSTSRGSC3.4
Celera1944,266,646 - 44,266,781UniSTS
RH 3.4 Map19596.8UniSTS
Cytogenetic Map19q12UniSTS
RH137130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21944,993,815 - 44,993,995 (+)MAPPERmRatBN7.2
Rnor_6.01949,479,793 - 49,479,972NCBIRnor6.0
Rnor_5.01960,271,098 - 60,271,277UniSTSRnor5.0
RGSC_v3.41947,051,361 - 47,051,540UniSTSRGSC3.4
Celera1944,267,027 - 44,267,206UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 26 24 18 11 18 37 20 35
Low 2 17 33 23 8 23 8 11 37 15 6 11 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000015158   ⟹   ENSRNOP00000015158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1944,971,709 - 44,993,938 (+)Ensembl
Rnor_6.0 Ensembl1949,462,129 - 49,479,996 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000042458   ⟹   ENSRNOP00000050945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1944,968,308 - 44,993,415 (+)Ensembl
Rnor_6.0 Ensembl1949,340,184 - 49,479,392 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084445   ⟹   ENSRNOP00000071328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1944,971,712 - 44,994,012 (+)Ensembl
Rnor_6.0 Ensembl1949,457,677 - 49,479,983 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110763   ⟹   ENSRNOP00000094353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1944,971,053 - 44,993,415 (+)Ensembl
RefSeq Acc Id: NM_001008366   ⟹   NP_001008367
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,880,533 - 61,902,850 (+)NCBI
mRatBN7.21944,971,695 - 44,994,012 (+)NCBI
Rnor_6.01949,457,677 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
RGSC_v3.41947,029,240 - 47,051,557 (+)RGD
Celera1944,244,906 - 44,267,223 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255686   ⟹   XP_006255748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,880,612 - 61,902,850 (+)NCBI
mRatBN7.21944,971,772 - 44,994,019 (+)NCBI
Rnor_6.01949,457,804 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255687   ⟹   XP_006255749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,880,285 - 61,902,850 (+)NCBI
mRatBN7.21944,971,464 - 44,994,019 (+)NCBI
Rnor_6.01949,457,461 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255689   ⟹   XP_006255751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,880,612 - 61,902,850 (+)NCBI
mRatBN7.21944,971,772 - 44,994,019 (+)NCBI
Rnor_6.01949,457,804 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255691   ⟹   XP_006255753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,880,612 - 61,902,850 (+)NCBI
mRatBN7.21944,971,712 - 44,994,019 (+)NCBI
Rnor_6.01949,457,804 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255692   ⟹   XP_006255754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,880,473 - 61,902,850 (+)NCBI
mRatBN7.21944,971,635 - 44,994,019 (+)NCBI
Rnor_6.01949,457,673 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097868   ⟹   XP_038953796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,880,101 - 61,902,850 (+)NCBI
mRatBN7.21944,971,265 - 44,994,019 (+)NCBI
RefSeq Acc Id: XM_039097869   ⟹   XP_038953797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,880,472 - 61,902,850 (+)NCBI
mRatBN7.21944,971,635 - 44,994,019 (+)NCBI
RefSeq Acc Id: XM_039097870   ⟹   XP_038953798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,880,615 - 61,902,850 (+)NCBI
mRatBN7.21944,971,775 - 44,994,019 (+)NCBI
RefSeq Acc Id: XM_063278143   ⟹   XP_063134213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81961,880,101 - 61,902,850 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001008367   ⟸   NM_001008366
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot),   A6IZF9 (UniProtKB/TrEMBL),   A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255749   ⟸   XM_006255687
- Peptide Label: isoform X1
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot),   A6IZF9 (UniProtKB/TrEMBL),   A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255754   ⟸   XM_006255692
- Peptide Label: isoform X2
- UniProtKB: A0A8L2UQ64 (UniProtKB/TrEMBL),   A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255751   ⟸   XM_006255689
- Peptide Label: isoform X1
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot),   A6IZF9 (UniProtKB/TrEMBL),   A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255748   ⟸   XM_006255686
- Peptide Label: isoform X1
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot),   A6IZF9 (UniProtKB/TrEMBL),   A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255753   ⟸   XM_006255691
- Peptide Label: isoform X2
- UniProtKB: A0A8L2UQ64 (UniProtKB/TrEMBL),   A0A0H2UHI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071328   ⟸   ENSRNOT00000084445
RefSeq Acc Id: ENSRNOP00000050945   ⟸   ENSRNOT00000042458
RefSeq Acc Id: ENSRNOP00000015158   ⟸   ENSRNOT00000015158
RefSeq Acc Id: XP_038953796   ⟸   XM_039097868
- Peptide Label: isoform X1
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot),   A6IZF9 (UniProtKB/TrEMBL),   A0A0H2UHI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953797   ⟸   XM_039097869
- Peptide Label: isoform X1
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot),   A6IZF9 (UniProtKB/TrEMBL),   A0A0H2UHI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953798   ⟸   XM_039097870
- Peptide Label: isoform X1
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot),   A6IZF9 (UniProtKB/TrEMBL),   A0A0H2UHI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000094353   ⟸   ENSRNOT00000110763
RefSeq Acc Id: XP_063134213   ⟸   XM_063278143
- Peptide Label: isoform X2
- UniProtKB: A0A8L2UQ64 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2W4-F1-model_v2 AlphaFold Q5U2W4 1-340 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701166
Promoter ID:EPDNEW_R11690
Type:multiple initiation site
Name:Cenpn_1
Description:centromere protein N
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01949,457,688 - 49,457,748EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310953 AgrOrtholog
BioCyc Gene G2FUF-5561 BioCyc
Ensembl Genes ENSRNOG00000011296 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055021644 UniProtKB/Swiss-Prot
  ENSRNOG00060020792 UniProtKB/Swiss-Prot
  ENSRNOG00065006455 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015158 UniProtKB/TrEMBL
  ENSRNOT00000015158.7 UniProtKB/Swiss-Prot
  ENSRNOT00000042458.7 UniProtKB/TrEMBL
  ENSRNOT00000084445.2 UniProtKB/TrEMBL
  ENSRNOT00000110763.1 UniProtKB/TrEMBL
  ENSRNOT00055037049 UniProtKB/Swiss-Prot
  ENSRNOT00060036118 UniProtKB/Swiss-Prot
  ENSRNOT00065009963 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7135799 IMAGE-MGC_LOAD
InterPro Chl4/mis15/CENP-N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361416 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94524 IMAGE-MGC_LOAD
NCBI Gene 361416 ENTREZGENE
PANTHER CENTROMERE PROTEIN N UniProtKB/Swiss-Prot
  CENTROMERE PROTEIN N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CENTROMERE PROTEIN N UniProtKB/TrEMBL
Pfam CENP-N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cenpn PhenoGen
RatGTEx ENSRNOG00000011296 RatGTEx
  ENSRNOG00055021644 RatGTEx
  ENSRNOG00060020792 RatGTEx
  ENSRNOG00065006455 RatGTEx
UniProt A0A0H2UHI9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHJ5_RAT UniProtKB/TrEMBL
  A0A8L2UQ64 ENTREZGENE, UniProtKB/TrEMBL
  A6IZF9 ENTREZGENE, UniProtKB/TrEMBL
  CENPN_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q7TME4_RAT UniProtKB/TrEMBL
UniProt Secondary F7EP77 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Cenpn  centromere protein N  RGD1310953  similar to RIKEN cDNA 2610510J17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310953  similar to RIKEN cDNA 2610510J17  RGD1310953_predicted  similar to RIKEN cDNA 2610510J17 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310953_predicted  similar to RIKEN cDNA 2610510J17 (predicted)  LOC361416_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361416_predicted  similar to RIKEN cDNA 2610510J17 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL