| Gene: Rrp15 (ribosomal RNA processing 15 homolog) Chinchilla lanigera |
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Analyze |
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| Symbol: |
Rrp15 |
| Name: |
ribosomal RNA processing 15 homolog |
| RGD ID: |
9015091 |
| Description: |
ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); Loeys-Dietz syndrome 4 (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| RGD Orthologs |
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| Alliance Orthologs |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955406 | 262,346 - 296,439 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955406 | 260,447 - 295,842 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
Rrp15
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955406 | 262,346 - 296,439 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955406 | 260,447 - 295,842 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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RRP15
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 218,285,293 - 218,337,983 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 218,285,293 - 218,337,983 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 218,458,635 - 218,511,325 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 216,525,252 - 216,577,948 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 1 | 191,675,091 - 191,727,786 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | q41 | NCBI | | | | | HuRef | 1 | 189,126,828 - 189,179,495 (+) | NCBI | | HuRef | | | CHM1_1 | 1 | 219,730,946 - 219,783,677 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 217,520,058 - 217,572,747 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Rrp15
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 186,453,283 - 186,481,555 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 186,453,175 - 186,481,555 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 186,721,086 - 186,749,358 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 186,720,978 - 186,749,358 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 188,544,965 - 188,573,237 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 188,421,880 - 188,452,712 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 193,664,585 - 193,683,559 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | H5 | NCBI | | | | | cM Map | 1 | 89.95 | NCBI | | | | |
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Rrp15
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 13 | 100,807,729 - 100,830,812 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 13 | 98,276,276 - 98,299,357 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 13 | 98,276,134 - 98,299,370 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 13 | 100,793,786 - 100,816,887 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 13 | 102,180,954 - 102,204,035 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 13 | 99,376,101 - 99,399,202 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 13 | 105,155,824 - 105,178,907 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 13 | 105,155,441 - 105,179,095 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 13 | 109,807,397 - 109,830,711 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 13 | 102,833,812 - 102,856,894 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 13 | 103,022,855 - 103,045,937 (-) | NCBI | | | | | Celera | 13 | 97,784,470 - 97,807,553 (-) | NCBI | | Celera | | | Cytogenetic Map | 13 | q26 | NCBI | | | | |
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RRP15
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 31,074,833 - 31,121,954 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 31,037,398 - 31,083,991 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 193,846,921 - 193,900,077 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 198,698,849 - 198,745,011 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 198,698,850 - 198,745,011 (+) | Ensembl | panpan1.1 | | panPan2 | |
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RRP15
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 38 | 13,377,518 - 13,416,809 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 38 | 13,377,571 - 13,421,810 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 38 | 13,419,617 - 13,459,111 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 38 | 13,411,023 - 13,450,593 (+) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 38 | 13,420,320 - 13,466,150 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 38 | 13,766,942 - 13,812,671 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 38 | 14,075,819 - 14,121,556 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Rrp15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RRP15
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 10 | 8,253,822 - 8,303,860 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 10 | 8,253,798 - 8,296,143 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 10 | 10,300,927 - 10,339,246 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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RRP15
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 25 | 11,273,756 - 11,318,280 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 25 | 11,274,241 - 11,318,290 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666055 | 11,685,342 - 11,729,923 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Rrp15
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
ENSCLAT00000012535 ⟹ ENSCLAP00000012391 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 Ensembl | NW_004955406 | 262,346 - 296,439 (-) | Ensembl |
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| RefSeq Acc Id: |
XM_005374704 ⟹ XP_005374761 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 | NW_004955406 | 260,447 - 295,842 (-) | NCBI |
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| Sequence: |
CAATTCTTGACGAACACTTCCGTTCAGGCAAGATGGCTGCGGCCATGCAAGACTCACGTGTGGC
CACGGGGAAAAAGCTGAAAAAGTCCCTGAAAAAGAAGAAGATGAAAATAGTAGCCAGGGCTGTG
GCCTCAGCTTCCGACAGCGAAGGTTCTGAGGGAGGCTGTGGGCTGTCCGACGATGGAGCCGTGG
AAGCAGACAATGAGGAGGATGCTGAAGCCCGTGACAAAGAAAATGAAAACACTGCCGACTCCGG
TGCTGGGGCTAATGTGGGCTGGGCAGATGCCATGGCTAAGATCCTTAACAAAAAAACGCCTAAG
AGTAAACCCACCATTCTCATCAAAAACAAAGAGCTGGAAAAGGAAAAGGAGAGGCTGAAGCAAG
AAAGACTGGAGAAAAGAAGGCAGCTGGACAAGAAGCGAGAGTGGGAAATGATGTGTAGAGCAAA
GCCAGATGTCGTCCAAGACAAAGACACGGAGAGGAATCTCCAGAGAACGGCAACGAGGGGTGTG
GTGCAGTTGTTTAACGCTGTTCAGAAACATCAGAAGAACGTTGATGAGAAGGTTAAAGAGGCAG
GAGGCTCTGTTAGGAAGCGTGCGAAGCTGATATCAAGTGTTTCCAAGAGAGATTTCATCAGTGT
TCTCAGAGGCATGGACGGAACTACAAATGAGAAAAGTTCATCTGAAAAGAACCCAAAAGCCAAA
CAGGCTGAAGTGAAATCAGCAGAGGGCCCAGGTTGGAGCATTCTGCGGGACGATTTCATGATGG
GGGCCTCCATGAAGGACTGGGACCGGGACAGCGACAGCGCCGACGACAGCATAGCAGGGCCTGC
GGGTGACTGAGGCAGAGAGCGCTGTGGTAGACACGTGTGCTTTGTCCTCTGAGGTGGGGGAATG
GTGAGGATCTGTGAGCCAGAAATTCGCCGGCTGTGGTGTCCCCTTTTCTTGTAAACTTTCTCAA
ATGAAGGTATTTTCAGCCCTGTATATTTGTTTTTCCTCCAGACATTTGTAAAAAGAGGCGTTGC
TGCCTGACCGGCAAGGCTTTCACTTTGCTGGGGTCATGGCACGTTGACATAGCCTGCTCATCGA
TACCGGTGTGGTGTTATTATCACTGATGTTTCAAGAAATGCGGTACCGATCATAATTAAAATGA
ACTCTTTCAAGTTAGTATGTTTCTGCCTTCCAGCTCAGAGATGTATTTGTCTGTAGTTGTTGAA
ATAATTGGTATCATCTTGTTTTTTTGGTGTAGTAGAATGTTAAGAAAACCTATATAGTAAAGTT
TTCAATTATAGTATTTCTGATTTGGGTGTTGATTTTAATTTTTGATTTACTGGTAAACCTGTTT
TAGGGTGTTCCTTCCTTTTTTATACTGTACGAAGCAATATAATAAGTGATGATTTATTTTAAGT
ATGAGGTTATTTTTGCATGGAAGAATGAGAATTTTAGACTCTTTTTCCCTGAACTAATGGACTT
TGCTTAAATTCGCTTTTTGGGCAGTGCAGCCAGGAAAATGATGGAGCCGGAAAACAGGTAGTCT
GCATCAGGTCCTGCGCCTAACTTGCGTCAGAGTTCTCATCTCATCTGCCTCAAATATTGCATCC
AGTTTGAGACTTGCTTTCGTATTGCTGCCTTAGAAGTTATTAAATTGGATGTCCTTTTAGTATT
TGGTTGTTAAACAAAAAGAGAAGAGAACTGAGGCTATTTAGGATCATCCCGAAGTATCTGGGAA
ATTCTGCCCAAGATGTGAAGTTTATACAGAAATTGTTCTGTGAGTGTGATCTGCTCCTTACTGG
GAAGGCTCCATCCCGGCCCCCCTCCTCGTCCCAGCACCCAGTTGTGGCACTTGCATCTGCTGCA
CACTGAAGCGCGCGCCTCCCCCAGAGACGACGCGCCGGAGCAGACGTGCTTATGTTTCCAGCCC
ATCTGAGTGTCACAGGTATTATATGACTAACGTTAAATTAGCCTATGGCCTGGTGTTTATTATC
ATAAAGGATGGTGTATTGAGTGGCTAAAACAGCAAACCTTGAAATGCATTTTTCTATTTATCTT
CACTCTTGAATGTTAGTGTCTTATTAAATTAGAGAACCACCGTTTTGCCATTTTAATATAAATA
AATGTGAACAAATATTCCTTAGTAGTACGGGAATGTGTTACCATGTTAAATATCCCAATACAAC
TTCACATAGATAAGTATTTCAGTGTAAGTTAACACATGCTACCCTTGAATCATAGTTTTACAAA
ATTTTGCGCAGTGATAAAAATGAGTAACTACTTCTTGACTAAAAAATAGTTTTGAAACACATAG
TTGTATTTTATAGTCCTTCATTTGAATTAGGAAAATTGAAAAAGGCTTTCAAATTGAAAGTAAG
GAGGAGAATATTTTCAGATTTTCTTCTTGCAGAAATGATTTTATTCCAAAATAAAATTGTGTTG
CCAGTTGGATCCCTCTTACAGAAAAAGGTAAAGTGTCATTTATGTTAGAAGGCTATGAATTTTT
GCCATAAAGTTGAGATGCCCTCTGTTAATATTTGTTCATCTTGACTATAAGATATTTAAGCAAA
AAATTCTGTGACTCTAAGGATGAATGTACTAGTTCAGAAACTTAAGTATGCATCTTTAAATGAA
TATGTCAGATAGTTTATTTTGTTAGCTCTATCCTGAATACATTATGTGAACCATTTAAGTTCTT
CTGACATCAGTCTGATAAAGAACTCTGTCTATTCCTTTCTCTGCATTGCTTTTCAATTCTGTAA
GGAGAAATTGCATCCCATTTCTCTCCCCAGTCACTTATCTACAAATAACATGAGGGTATTATTT
ACGGTAACTATTTAGATTAATGTAGTAGTAAAGAAACTGCTTCATTTAGAAAAAAAAAAATTGA
AAAAAACCTCAACAAAATAACTGTATTTCCTTATTCTTTTGCCTAGGAATTTGGGTGCTGGGAT
GAATGTTCTCAGTATCCAGCATAATTTAGCATTATTTATTGTTTTAAAGCTTTAGGATTTGAAA
TTCATAGGTAATACCTGTTTAAGACTCAAAATAACTTAGAGTCATCCTGGTAGTTTTTAATACT
TCAACGTAGAATTGGAATATTGACCATATTTTCAGGGTACCTGGAATTCTTCATTGCTGAAGAA
TTACTAACTGATTCCAAAATACGCCTTTAAAACTCTGGATGGAATCATTCCGGGACTTACATTC
AGGACTGGAAGTGTAAAATTCCTCATTAAGAAGTTCTAGAAGGCTAACTCGAGGGCAAGTCCAA
ATTCTTCAGATTATTTTCTGTCTTTTAAAACAGATGGGTGAAGAAAGACATGTTTCAGTTCTGG
GAAACCTCCTGATGCCTTCTAGCCGGTGTGTTTCACACCTGTGGTTTTCTGTAATAGTGACTGG
CCGTCACGCAACCTAATCCTGCCTGTGCTGGTCTTCAGGCCCTAGGAGTGCAGTGCTTATTACG
GAGCCCGTGGATTCCAGTTTATAGGTGCCAGAAGATGCCCTAGTAAAACACGATGGCAGAGAAG
GCGTGAGCCTGGAATGTGAGCAGGCACATGAAGGTACAGAAAATACAAACCTTGTCGCCCAAAA
GTTAAGAGAATTGTAAGGTCTGAGAAAAAGCCCAGATTGCAGCCTTCAGGGAGTGTAAACACTC
CCGTGGGAAAGACGGTAGGTCAGATAAGGTGGTACCTTTGGGTAACTTCTCCTCCTTATGTGTA
TATGCTTATGTCCAGTTATTTTTATGACTGATTGTATTGCTGTGTGTGCTTATTTGTATCGGTT
AATATTTTATGTGTATAATTTTTACATACATCTATAATAGAGATTTTTTAAAAATGCA
hide sequence
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| RefSeq Acc Id: |
XP_005374761 ⟸ XM_005374704 |
| - UniProtKB: |
A0A8C2VG41 (UniProtKB/TrEMBL) |
| - Sequence: |
MAAAMQDSRVATGKKLKKSLKKKKMKIVARAVASASDSEGSEGGCGLSDDGAVEADNEEDAEAR
DKENENTADSGAGANVGWADAMAKILNKKTPKSKPTILIKNKELEKEKERLKQERLEKRRQLDK
KREWEMMCRAKPDVVQDKDTERNLQRTATRGVVQLFNAVQKHQKNVDEKVKEAGGSVRKRAKLI
SSVSKRDFISVLRGMDGTTNEKSSSEKNPKAKQAEVKSAEGPGWSILRDDFMMGASMKDWDRDS
DSADDSIAGPAGD
hide sequence
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| RefSeq Acc Id: |
ENSCLAP00000012391 ⟸ ENSCLAT00000012535 |
Additional Information
Nomenclature History
| Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
| 2015-08-25 |
Rrp15 |
ribosomal RNA processing 15 homolog |
|
ribosomal RNA processing 15 homolog (S. cerevisiae) |
Symbol and/or name change |
5135510 |
APPROVED |
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