Rrp15 (ribosomal RNA processing 15 homolog)

Gene: Rrp15 (ribosomal RNA processing 15 homolog) Rattus norvegicus

Analyze

Symbol:

Rrp15

Name:

ribosomal RNA processing 15 homolog

RGD ID:

1306106

Description:

Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to be part of preribosome, large subunit precursor. Orthologous to human RRP15 (ribosomal RNA processing 15 homolog); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360895; MGC105708; RGD1306106; ribosomal RNA processing 15 homolog (S. cerevisiae); ribosomal RNA-processing protein 15; RRP15-like protein; similar to RIKEN cDNA 2810430M08

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RRP15 (ribosomal RNA processing 15 homolog)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rrp15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rrp15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RRP15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RRP15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rrp15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RRP15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RRP15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rrp15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Rrp15 (ribosomal RNA processing 15 homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RRP15 (ribosomal RNA processing 15 homolog)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rrp15 (ribosomal RNA processing 15 homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F53E10.6	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG3817	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RRP15	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	100,807,729 - 100,830,812 (-)	NCBI		GRCr8
mRatBN7.2	13	98,276,276 - 98,299,357 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	98,276,134 - 98,299,370 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	100,793,786 - 100,816,887 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	102,180,954 - 102,204,035 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	99,376,101 - 99,399,202 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	105,155,824 - 105,178,907 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	105,155,441 - 105,179,095 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	109,807,397 - 109,830,711 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	102,833,812 - 102,856,894 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	103,022,855 - 103,045,937 (-)	NCBI
Celera	13	97,784,470 - 97,807,553 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Loeys-Dietz syndrome 4 (ISO)

parathyroid carcinoma (ISO)

Usher syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-alpha-phellandrene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

5-fluorouracil (ISO)

all-trans-retinoic acid (ISO)

alpha-phellandrene (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

coumestrol (ISO)

crotonaldehyde (ISO)

cyclosporin A (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

genistein (ISO)

glafenine (EXP)

hydrogen peroxide (ISO)

ivermectin (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

nickel atom (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium dichromate (EXP)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

zinc dichloride (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

maturation of 5.8S rRNA (IBA)

maturation of LSU-rRNA (IBA)

Cellular Component

preribosome, large subunit precursor (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:15769876

Genomics

Comparative Map Data

Rrp15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	100,807,729 - 100,830,812 (-)	NCBI		GRCr8
mRatBN7.2	13	98,276,276 - 98,299,357 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	98,276,134 - 98,299,370 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	100,793,786 - 100,816,887 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	102,180,954 - 102,204,035 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	99,376,101 - 99,399,202 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	105,155,824 - 105,178,907 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	105,155,441 - 105,179,095 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	109,807,397 - 109,830,711 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	102,833,812 - 102,856,894 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	103,022,855 - 103,045,937 (-)	NCBI
Celera	13	97,784,470 - 97,807,553 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

RRP15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	218,285,293 - 218,337,983 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	218,285,293 - 218,337,983 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	218,458,635 - 218,511,325 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	216,525,252 - 216,577,948 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	191,675,091 - 191,727,786 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI
HuRef	1	189,126,828 - 189,179,495 (+)	NCBI		HuRef
CHM1_1	1	219,730,946 - 219,783,677 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	217,520,058 - 217,572,747 (+)	NCBI		T2T-CHM13v2.0

Rrp15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	186,453,283 - 186,481,555 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	186,453,175 - 186,481,555 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	186,721,086 - 186,749,358 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	186,720,978 - 186,749,358 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	188,544,965 - 188,573,237 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	188,421,880 - 188,452,712 (-)	NCBI		MGSCv36	mm8
Celera	1	193,664,585 - 193,683,559 (-)	NCBI		Celera
Cytogenetic Map	1	H5	NCBI
cM Map	1	89.95	NCBI

Rrp15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	262,346 - 296,439 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	260,447 - 295,842 (-)	NCBI	ChiLan1.0	ChiLan1.0

RRP15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	31,074,833 - 31,121,954 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	31,037,398 - 31,083,991 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	193,846,921 - 193,900,077 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	198,698,849 - 198,745,011 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	198,698,850 - 198,745,011 (+)	Ensembl	panpan1.1		panPan2

RRP15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	13,377,518 - 13,416,809 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	13,377,571 - 13,421,810 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	13,419,617 - 13,459,111 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	13,411,023 - 13,450,593 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	38	13,420,320 - 13,466,150 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	13,766,942 - 13,812,671 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	14,075,819 - 14,121,556 (+)	NCBI		UU_Cfam_GSD_1.0

Rrp15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	58,391,000 - 58,446,398 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936628	408,911 - 456,425 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936628	408,854 - 456,464 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RRP15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	8,253,822 - 8,303,860 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	8,253,798 - 8,296,143 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	10,300,927 - 10,339,246 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RRP15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	11,273,756 - 11,318,280 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	11,274,241 - 11,318,290 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	11,685,342 - 11,729,923 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rrp15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624835	2,314,499 - 2,349,259 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624835	2,314,341 - 2,355,741 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rrp15
183 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	47
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000003359
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	56056920	101056920	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	61825626	106807694	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	65103704	106807694	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	65103704	106807694	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	74862117	101339893	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	80753256	106807694	Rat

Markers in Region

RH130884

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	98,276,305 - 98,276,522 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	105,155,854 - 105,156,070	NCBI	Rnor6.0
Rnor_5.0	13	109,807,427 - 109,807,643	UniSTS	Rnor5.0
RGSC_v3.4	13	102,833,842 - 102,834,058	UniSTS	RGSC3.4
Celera	13	97,784,500 - 97,784,716	UniSTS
RH 3.4 Map	13	670.0	UniSTS
Cytogenetic Map	13	q26	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	27	27	24	7	24		3	66	25	33	10
Low		16	30	17	12	17	8	8	8	10	8	1	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001009702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000003359 ⟹ ENSRNOP00000003359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	98,276,134 - 98,299,370 (-)	Ensembl
Rnor_6.0 Ensembl	13	105,155,441 - 105,179,095 (-)	Ensembl

RefSeq Acc Id:

NM_001009702 ⟹ NP_001009702

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	100,807,729 - 100,830,812 (-)	NCBI
mRatBN7.2	13	98,276,276 - 98,299,357 (-)	NCBI
Rnor_6.0	13	105,155,824 - 105,178,907 (-)	NCBI
Rnor_5.0	13	109,807,397 - 109,830,711 (-)	NCBI
RGSC_v3.4	13	102,833,812 - 102,856,894 (-)	RGD
Celera	13	97,784,470 - 97,807,553 (-)	RGD

Sequence:

show sequence

CAAAATGGCTGCGGCCGTTCAGGACTCACGTGTGAACCCCGGAGGAAAGCTGAAGCGTTCCCCG
AAGAAAAAGAAAAAAATGAAGAAGGTAGCCAAGGCTGCAGTGTCGAAGCTAGAAGATGAGCTCA
AAGACTCTTCCGGCGGAGAAGGAAGCTGTGAGTCAGAGATGGACGACTCAGACGATGGAGCTGC
AGAAGCAGACAGCGAGGACAACGTTGAATCCTGTGAGGAGGAAAATGAAGTCGCTGCAGAATCG
AGTGCTGGGACTAATTCGGGCTGGGCAGATGCCATGGCAAAAATCCTTAACAAAAAGACTCCTA
AAAGCAAACCCACCATCCTGACCAAAAACAAAGAGCTGGAGAAGGAGAAGGAGAAGCTAAAGCA
GGAGAGGCTGGAGAAAAGGAAGCAGATTGATAAGAAGCGGGAGTGGGAAATGCTGTGCAGAGTG
AAGCCAGATGTCATCAAAGACAAAGAGGCAGAGAGGAACCTTCAGAGGATTGCGACAAGGGGCG
TGGTGCAGCTCTTCAATGCTGTTCAGAAACACCAGAGGAATGTTGACGAAAAGGTTAAGGAAGT
AGGAGGCTCCATCCGGAAGCGAGCTAAGCTGATGTCAACTGTTTCCAAGAAGGATTTCATCAGT
GTTCTGCGAGGAATGGATGGTGCAAGTGAGAACAGTTCTGCTGGGAAGAGCCCCAAAGCCAGAC
AGACCGAAGTGAAATCAGAGGAGGGTCCGGGGTGGAAGATTCTGCGAGATGACTTCATGATGGG
CGCCAGCATGAAGGACTGGGACAAGGAGAGCGAGGGTGAGGAGCCTGCTGACGGCCAGGCAGGG
TCGGCCAGCCACTGAGCAGACGATGGGAGCATCCGGCTCTCCTGCAAGCAGCCCCGAAGGCGAA
GGCGGCGGGAGCCTCGGGGCCATCTGCTAAGTGCCAGGACCTCCTGAGAGCCTGAGCTCAGGGC
TCCCACGTGCAGACTGTACTAAAGTTGTATTTTTAATTCTTATGTACATTTAAGCCGTTTTTCC
AAAATATTTGTACAATGGAATATGTTTTTTACTTGAACAGTAAGATGTGCATTTTCTAGGACCC
TTTCTGTGGACACATGCGGATCGCACACCAGCGTTAAAGTGCAGACCCATTTAGAATTAAAATG
AATTTGATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001009702	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87649	(Get FASTA)	NCBI Sequence Viewer
	EDL94933	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003359
	ENSRNOP00000003359.4
	ENSRNOP00055017196
	ENSRNOP00060009507
	ENSRNOP00065023069
GenBank Protein	Q5M947	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001009702 ⟸ NM_001009702

- UniProtKB:

Q5M947 (UniProtKB/Swiss-Prot), A6JGS7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAAVQDSRVNPGGKLKRSPKKKKKMKKVAKAAVSKLEDELKDSSGGEGSCESEMDDSDDGAAE
ADSEDNVESCEEENEVAAESSAGTNSGWADAMAKILNKKTPKSKPTILTKNKELEKEKEKLKQE
RLEKRKQIDKKREWEMLCRVKPDVIKDKEAERNLQRIATRGVVQLFNAVQKHQRNVDEKVKEVG
GSIRKRAKLMSTVSKKDFISVLRGMDGASENSSAGKSPKARQTEVKSEEGPGWKILRDDFMMGA
SMKDWDKESEGEEPADGQAGSASH

hide sequence

RefSeq Acc Id:

ENSRNOP00000003359 ⟸ ENSRNOT00000003359

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5M947-F1-model_v2	AlphaFold	Q5M947	1-280	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699098

Promoter ID:

EPDNEW_R9623

Type:

multiple initiation site

Name:

Rrp15_1

Description:

ribosomal RNA processing 15 homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	105,178,922 - 105,178,982	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306106	AgrOrtholog
BioCyc Gene	G2FUF-16956	BioCyc
Ensembl Genes	ENSRNOG00000002450	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055012467	UniProtKB/Swiss-Prot
	ENSRNOG00060007613	UniProtKB/Swiss-Prot
	ENSRNOG00065017426	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000003359	ENTREZGENE
	ENSRNOT00000003359.7	UniProtKB/Swiss-Prot
	ENSRNOT00055021259	UniProtKB/Swiss-Prot
	ENSRNOT00060012547	UniProtKB/Swiss-Prot
	ENSRNOT00065029107	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7310706	IMAGE-MGC_LOAD
InterPro	Rrp15	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:360895	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:105708	IMAGE-MGC_LOAD
NCBI Gene	360895	ENTREZGENE
PANTHER	PTHR13245	UniProtKB/Swiss-Prot
	RRP15-LIKE PROTEIN	UniProtKB/Swiss-Prot
	RRP15-LIKE PROTEIN	UniProtKB/TrEMBL
	RRP15-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	Rrp15p	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rrp15	PhenoGen
RatGTEx	ENSRNOG00000002450	RatGTEx
	ENSRNOG00055012467	RatGTEx
	ENSRNOG00060007613	RatGTEx
	ENSRNOG00065017426	RatGTEx
UniProt	A6JGS7	ENTREZGENE, UniProtKB/TrEMBL
	Q5M947	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-30	Rrp15	ribosomal RNA processing 15 homolog	Rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	RGD1306106	similar to RIKEN cDNA 2810430M08	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306106	similar to RIKEN cDNA 2810430M08	RGD1306106_predicted	similar to RIKEN cDNA 2810430M08 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306106_predicted	similar to RIKEN cDNA 2810430M08 (predicted)	LOC360895_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360895_predicted	similar to RIKEN cDNA 2810430M08 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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