Epsti1 (epithelial stromal interaction 1) - Rat Genome Database

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Gene: Epsti1 (epithelial stromal interaction 1) Chinchilla lanigera
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Symbol: Epsti1
Name: epithelial stromal interaction 1
RGD ID: 8994818
Description: ASSOCIATED WITH COVID-19 (ortholog); prostate cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: epithelial stromal interaction 1 (breast); epithelial-stromal interaction protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955518788,961 - 919,784 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955518790,815 - 919,869 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Epsti1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955518788,961 - 919,784 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955518790,815 - 919,869 (-)NCBIChiLan1.0ChiLan1.0
EPSTI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381342,886,388 - 42,992,241 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1342,886,388 - 42,992,271 (-)EnsemblGRCh38hg38GRCh38
GRCh371343,460,524 - 43,566,377 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361342,360,122 - 42,464,377 (-)NCBINCBI36Build 36hg18NCBI36
Build 341342,360,121 - 42,464,377NCBI
Celera1324,519,978 - 24,622,563 (-)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1324,264,416 - 24,368,626 (-)NCBIHuRef
CHM1_11343,428,059 - 43,533,952 (-)NCBICHM1_1
T2T-CHM13v2.01342,106,432 - 42,210,657 (-)NCBIT2T-CHM13v2.0
Epsti1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391478,141,679 - 78,240,096 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1478,141,679 - 78,240,097 (+)EnsemblGRCm39 Ensembl
GRCm381477,904,239 - 78,002,656 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1477,904,239 - 78,002,657 (+)EnsemblGRCm38mm10GRCm38
MGSCv371478,304,046 - 78,402,463 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361476,638,546 - 76,736,808 (+)NCBIMGSCv36mm8
Celera1475,422,555 - 75,520,932 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1441.08NCBI
Epsti1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81559,692,712 - 59,791,376 (+)NCBIGRCr8
mRatBN7.21553,283,964 - 53,382,192 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1553,284,216 - 53,382,191 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1557,417,604 - 57,515,564 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01558,535,948 - 58,633,920 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01555,360,511 - 55,458,802 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01560,084,966 - 60,190,360 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1560,084,918 - 60,190,363 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01563,762,909 - 63,865,564 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41558,989,876 - 59,088,931 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1552,880,729 - 52,978,481 (+)NCBICelera
Cytogenetic Map15q11NCBI
EPSTI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21442,373,947 - 42,477,696 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11333,477,595 - 33,581,105 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01324,058,760 - 24,162,261 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
EPSTI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1227,862,068 - 7,956,077 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl227,862,175 - 8,108,299 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha227,854,631 - 7,948,531 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0228,067,355 - 8,161,200 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl228,067,370 - 8,319,214 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1227,772,478 - 7,866,431 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0227,829,444 - 7,923,799 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0227,839,883 - 7,933,794 (+)NCBIUU_Cfam_GSD_1.0
Epsti1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945153,084,595 - 153,173,543 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936747900,889 - 989,590 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPSTI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1124,116,986 - 24,216,215 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11124,116,991 - 24,216,219 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,760,267 - 24,865,232 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPSTI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1320,955,649 - 21,128,997 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl321,022,117 - 21,128,503 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605723,064,565 - 23,239,629 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epsti1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474812,162,314 - 12,269,031 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474812,162,530 - 12,266,381 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000000423   ⟹   ENSCLAP00000000395
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955518788,961 - 919,784 (-)Ensembl
RefSeq Acc Id: XM_005409056   ⟹   XP_005409113
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955518790,815 - 919,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506970   ⟹   XP_013362424
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955518790,815 - 919,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506971   ⟹   XP_013362425
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955518790,815 - 919,869 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005409113 (Get FASTA)   NCBI Sequence Viewer  
  XP_013362424 (Get FASTA)   NCBI Sequence Viewer  
  XP_013362425 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000395
  ENSCLAP00000000395.1
RefSeq Acc Id: XP_005409113   ⟸   XM_005409056
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UHZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362425   ⟸   XM_013506971
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013362424   ⟸   XM_013506970
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000000395   ⟸   ENSCLAT00000000423


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000332 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000423 ENTREZGENE
  ENSCLAT00000000423.1 UniProtKB/TrEMBL
InterPro EPSTI1 UniProtKB/TrEMBL
NCBI Gene Epsti1 ENTREZGENE
PANTHER EPITHELIAL-STROMAL INTERACTION PROTEIN 1 UniProtKB/TrEMBL
  PTHR22529 UniProtKB/TrEMBL
UniProt A0A8C2UHZ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-10-04 Epsti1  epithelial stromal interaction 1    epithelial stromal interaction 1 (breast)  Symbol and/or name change 5135510 APPROVED