Epsti1 (epithelial stromal interaction 1) - Rat Genome Database

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Gene: Epsti1 (epithelial stromal interaction 1) Heterocephalus glaber
Analyze
Symbol: Epsti1
Name: epithelial stromal interaction 1
RGD ID: 18913497
Description: ASSOCIATED WITH COVID-19 (ortholog); prostate cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: epithelial stromal interaction 1 (breast); epithelial-stromal interaction protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474812,162,314 - 12,269,031 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474812,162,530 - 12,266,381 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Epsti1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474812,162,314 - 12,269,031 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474812,162,530 - 12,266,381 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
EPSTI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381342,886,388 - 42,992,241 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1342,886,388 - 42,992,271 (-)EnsemblGRCh38hg38GRCh38
GRCh371343,460,524 - 43,566,377 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361342,360,122 - 42,464,377 (-)NCBINCBI36Build 36hg18NCBI36
Build 341342,360,121 - 42,464,377NCBI
Celera1324,519,978 - 24,622,563 (-)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1324,264,416 - 24,368,626 (-)NCBIHuRef
CHM1_11343,428,059 - 43,533,952 (-)NCBICHM1_1
T2T-CHM13v2.01342,106,432 - 42,210,657 (-)NCBIT2T-CHM13v2.0
Epsti1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391478,141,679 - 78,240,096 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1478,141,679 - 78,240,097 (+)EnsemblGRCm39 Ensembl
GRCm381477,904,239 - 78,002,656 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1477,904,239 - 78,002,657 (+)EnsemblGRCm38mm10GRCm38
MGSCv371478,304,046 - 78,402,463 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361476,638,546 - 76,736,808 (+)NCBIMGSCv36mm8
Celera1475,422,555 - 75,520,932 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1441.08NCBI
Epsti1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81559,692,712 - 59,791,376 (+)NCBIGRCr8
mRatBN7.21553,283,964 - 53,382,192 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1553,284,216 - 53,382,191 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1557,417,604 - 57,515,564 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01558,535,948 - 58,633,920 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01555,360,511 - 55,458,802 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01560,084,966 - 60,190,360 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1560,084,918 - 60,190,363 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01563,762,909 - 63,865,564 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41558,989,876 - 59,088,931 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1552,880,729 - 52,978,481 (+)NCBICelera
Cytogenetic Map15q11NCBI
Epsti1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955518788,961 - 919,784 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955518790,815 - 919,869 (-)NCBIChiLan1.0ChiLan1.0
EPSTI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21442,373,947 - 42,477,696 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11333,477,595 - 33,581,105 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01324,058,760 - 24,162,261 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
EPSTI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1227,862,068 - 7,956,077 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl227,862,175 - 8,108,299 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha227,854,631 - 7,948,531 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0228,067,355 - 8,161,200 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl228,067,370 - 8,319,214 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1227,772,478 - 7,866,431 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0227,829,444 - 7,923,799 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0227,839,883 - 7,933,794 (+)NCBIUU_Cfam_GSD_1.0
Epsti1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945153,084,595 - 153,173,543 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936747900,889 - 989,590 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPSTI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1124,116,986 - 24,216,215 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11124,116,991 - 24,216,219 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,760,267 - 24,865,232 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPSTI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1320,955,649 - 21,128,997 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl321,022,117 - 21,128,503 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605723,064,565 - 23,239,629 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000012635   ⟹   ENSHGLP00000012499
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474812,162,314 - 12,269,031 (+)Ensembl
RefSeq Acc Id: XM_004844244   ⟹   XP_004844301
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474812,162,533 - 12,266,381 (+)NCBI
RefSeq Acc Id: XM_004844245   ⟹   XP_004844302
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474812,162,530 - 12,266,381 (+)NCBI
RefSeq Acc Id: XM_013071998   ⟹   XP_012927452
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474812,182,822 - 12,266,381 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004844301 (Get FASTA)   NCBI Sequence Viewer  
  XP_004844302 (Get FASTA)   NCBI Sequence Viewer  
  XP_012927452 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012499
Reference Protein Sequences
RefSeq Acc Id: XP_004844302   ⟸   XM_004844245
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004844301   ⟸   XM_004844244
- Peptide Label: isoform X1
RefSeq Acc Id: XP_012927452   ⟸   XM_013071998
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000012499   ⟸   ENSHGLT00000012635


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008932 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012635 ENTREZGENE
NCBI Gene Epsti1 ENTREZGENE