Fundc1 (FUN14 domain containing 1)

Gene: Fundc1 (FUN14 domain containing 1) Chinchilla lanigera

Analyze

Symbol:

Fundc1

Name:

FUN14 domain containing 1

RGD ID:

8830495

Description:

INVOLVED IN mitophagy (ortholog); response to hypoxia (ortholog); response to organonitrogen compound (ortholog); PARTICIPATES IN mitochondrial autophagy pathway; ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Hypoxia (ortholog); FOUND IN mitochondrial outer membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

FUN14 domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955516	3,648,629 - 3,664,032 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955516	3,648,629 - 3,664,032 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

Hypoxia (ISO)

Kabuki Syndrome 2 (ISO)

Neurodevelopmental Disorders (ISO)

osteochondrodysplasia (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitophagy (ISO)

response to hypoxia (ISO)

response to organonitrogen compound (ISO)

Cellular Component

mitochondrial outer membrane (ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mitochondrial autophagy pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Fundc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955516	3,648,629 - 3,664,032 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955516	3,648,629 - 3,664,032 (+)	NCBI	ChiLan1.0	ChiLan1.0

FUNDC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	44,523,639 - 44,542,859 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	44,523,639 - 44,542,859 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	44,382,885 - 44,402,105 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	44,267,847 - 44,287,160 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	44,139,158 - 44,158,470	NCBI
Celera	X	48,519,971 - 48,539,287 (-)	NCBI		Celera
Cytogenetic Map	X	p11.3	NCBI
HuRef	X	42,105,885 - 42,125,812 (-)	NCBI		HuRef
CHM1_1	X	44,415,841 - 44,435,193 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	43,930,462 - 43,949,676 (-)	NCBI		T2T-CHM13v2.0

Fundc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	17,386,206 - 17,438,600 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	17,422,803 - 17,438,564 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	17,519,967 - 17,572,329 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	17,556,564 - 17,572,325 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	17,133,695 - 17,149,423 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	16,713,528 - 16,729,256 (-)	NCBI		MGSCv36	mm8
Celera	X	15,168,138 - 15,183,866 (-)	NCBI		Celera
Cytogenetic Map	X	A1.2	NCBI
cM Map	X	12.8	NCBI

Fundc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	7,666,787 - 7,683,443 (+)	NCBI		GRCr8
mRatBN7.2	X	5,083,635 - 5,100,293 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	5,083,617 - 5,100,284 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	5,136,794 - 5,153,466 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	8,612,588 - 8,629,261 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	4,932,812 - 4,949,480 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	5,549,468 - 5,566,125 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	5,549,419 - 5,566,127 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	6,329,908 - 6,346,565 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	16,672,818 - 16,689,475 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	5,589,536 - 5,606,194 (+)	NCBI		Celera
Cytogenetic Map	X	q11	NCBI

FUNDC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	46,169,288 - 46,188,398 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	46,172,661 - 46,191,723 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	36,970,051 - 36,989,276 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	44,790,550 - 44,809,318 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	44,790,550 - 44,809,793 (-)	Ensembl	panpan1.1		panPan2

FUNDC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	38,492,470 - 38,505,512 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	38,492,720 - 38,505,424 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	25,720,234 - 25,733,280 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	38,581,261 - 38,594,306 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	38,577,447 - 38,594,178 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	38,614,716 - 38,627,760 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	38,594,940 - 38,607,984 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	38,693,558 - 38,706,604 (-)	NCBI		UU_Cfam_GSD_1.0

Fundc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	30,803,266 - 30,816,345 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	10,643,071 - 10,657,134 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	10,643,172 - 10,657,118 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FUNDC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	39,724,998 - 39,737,532 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	39,726,194 - 39,737,663 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	44,109,888 - 44,121,363 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FUNDC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	41,685,945 - 41,705,037 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666076	6,906,483 - 6,926,162 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fundc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624887	626,321 - 641,293 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624887	626,321 - 641,296 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005408995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01067500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01067501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01214032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000001325 ⟹ ENSCLAP00000001283

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955516	3,648,629 - 3,664,032 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000001326 ⟹ ENSCLAP00000001284

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955516	3,648,819 - 3,662,660 (+)	Ensembl

RefSeq Acc Id:

XM_005408995 ⟹ XP_005409052

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955516	3,648,629 - 3,664,032 (+)	NCBI

Sequence:

show sequence

GCTGAGAGAAGTAGGCGGGGACTGAGCAACGATCCGGGAAGAGGAGAAGGAGGAGGCGGAGAAG
GGAAAAGAAAAGGAGGAAGGGAAAAAAAGAGACCATAGATTCCTCCCTTGGCCTAGAGCGGCCC
TTAAAGTGCAGGGGAGAGGAGGGCGGGCGGGGACCACCCCAGAACTGGCCGCCGGAGGTATCAT
GGCGTCCCGGAACCCCCCTCCCCAAGAATATGAAAGTGATGACGACTCTTACGAAGTGTTGGAT
TTAACAGAGTATGCAAGAAGACACCACTGGTGGAATCGAGTGTTTGGCCACCGATCAGGACCTA
TGGTAGAAAAATACTCAGTAGCTACCCAGATTGTAATGGGTGGCGTGACTGGCTGGTGTGCAGG
ATTTTTATTCCAGAAAGTTGGGAAACTTGCAGCAACGGCAGTAGGTGGTGGCTTTCTTCTCCTA
CAGATTGCCAGTCACAGTGGCTATGTTCAGATCGACTGGAAGAGAGTTGAAAAAGATGTAAACA
AAGCAAAAAGACAAATTAAGAAACGAGCAAATAAAGCAGCACCTGAAATCAACAATGTAATCGA
AGAAGCAACCGAATTTATCAAACAGAACATTGTGATATCCAGTGGATTTGTGGGAGGGTTTTTG
CTCGGCCTTGCATCCTAAGGACATGAACGACCCTTCCTAGGGGATCCAACTGTGAGAAGAGAGC
GGCAGCAGGGTGACCTCTCAGCAACACAAGCCGCCGGAGGCTCCCGAGAAGGGGAGACAACTTG
CTGGACAGTCCCCAATTCACAACTTCGCATTTTGCCATCTGAAGCTTGGCAAACAAGTATCTGC
TGTCCAACAACCTGTGTGGTATTTGAATAATAGTATTCTTGAGCAAAACATGGCTTTTGGCATT
TTTTTTTAAAAATTGCATCTGTTTAGAAACTAGCAGTAAGATACCACTGTTAGATATGGATATG
AGAAAAGAATCTGTTGGCTGTATCTCACAGTGAAACATTATCCTTTTTTATTTAAATGAGATGT
TCATTGTGCTTTGTACTGATGTTCCAGTACAGTGCCGATAGTCAAAACCGTGTCTCATAGCTTC
AGTAGTAGGGCTGACTTTTCTCTAAGATACGTTTGCAGTAAATGTGAAGAGTTGCAATGCCCTT
TTGTGGGAGGCGTTAGAAATAAGAGAATTATTAAAGATACTAAATAGATTCTGCTGATGTAATA
CCAGTCCTTAGGTTATTTTCTCTGCATTTCTTCCCTGCACTGCTTTTCAAAAAAGGCTCTTCTA
AGGAAATACTACAACATGTCTAAAGCTCTTTTTCCTTTTTTGACATCTGTAGTTTTAAAAATAT
CTTCTCGTATGTTACCTTCTAATTTTTGTATTTGTTTATCCTGGCAGCCTGGGCAGAACTAATT
TTGGGTGTACATATAGTTGGGTCATTGATTCATTTTATTAACTCTGAAAGTACATCTTTTTTAA
AACTCCTAGTTATTATTTTGGCCTCTCCATACTGTCTGAAGAATTGACTTTCTATGTAATCATG
AAATTGTACCGAAAGAGATTGTCTCCCTGACCGAGTCTAAGATTAAGAACTATGGCTTCCAGGC
TTTTGGCAGCGTTGTGTTTCCTGAACACTAGGCCAACTTACCTGTTTTTCGGGGCCAGCATCAT
ACCCTGTCAGTCTTTTCCCCCCAAACCTTTCCGGAGTGTTAATGTTGTCCATAGAATTCTAGGT
TGCAATGGAGAAAGACAGCCGAACAGCGTGGATTGGTGTGTTCAGATTGGAAAGACTGCAGATA
CTGTATCGAGACCATCTTCGTTTGCTGGGAGGTCTCCATAGCGCGTATACTGTGTGTGTTATAG
ACATGTGACGCTTCATACTTGGAAGATTGGTTACAGGCTTTTTGCTTTTATTTTCCTGAGCCTC
CTTAAAATTGAATGTGAGATCCATCTTTCATTTCTTCTTTTGTTCTCATAGTGCCTCAGATATA
ATGCTAAATAAACCTTTCTTAATATGAAGTAACTTTGCTTATGAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005409052	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000001283
	ENSCLAP00000001283.1
	ENSCLAP00000001284.1

RefSeq Acc Id:	XP_005409052 ⟸ XM_005408995
- UniProtKB:	A0A8C2UJY9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASRNPPPQEYESDDDSYEVLDLTEYARRHHWWNRVFGHRSGPMVEKYSVATQIVMGGVTGWCA GFLFQKVGKLAATAVGGGFLLLQIASHSGYVQIDWKRVEKDVNKAKRQIKKRANKAAPEINNVI EEATEFIKQNIVISSGFVGGFLLGLAS hide sequence

RefSeq Acc Id:

ENSCLAP00000001284 ⟸ ENSCLAT00000001326

RefSeq Acc Id:

ENSCLAP00000001283 ⟸ ENSCLAT00000001325

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000977	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000001325	ENTREZGENE
	ENSCLAT00000001325.1	UniProtKB/TrEMBL
	ENSCLAT00000001326.1	UniProtKB/TrEMBL
InterPro	FUN14	UniProtKB/TrEMBL
NCBI Gene	Fundc1	ENTREZGENE
PANTHER	FUN14 DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR21346	UniProtKB/TrEMBL
Pfam	FUN14	UniProtKB/TrEMBL
UniProt	A0A8C2UJY9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2UPD0_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

RGD Manual Annotations