Fundc1 (FUN14 domain containing 1) - Rat Genome Database

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Gene: Fundc1 (FUN14 domain containing 1) Heterocephalus glaber
Analyze
Symbol: Fundc1
Name: FUN14 domain containing 1
RGD ID: 18913918
Description: INVOLVED IN mitophagy (ortholog); response to hypoxia (ortholog); response to organonitrogen compound (ortholog); PARTICIPATES IN mitochondrial autophagy pathway; ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Hypoxia (ortholog); FOUND IN membrane (inferred); mitochondrial outer membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FUN14 domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624887626,321 - 641,293 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624887626,321 - 641,296 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Fundc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624887626,321 - 641,293 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624887626,321 - 641,296 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FUNDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X44,523,639 - 44,542,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX44,523,639 - 44,542,859 (-)EnsemblGRCh38hg38GRCh38
GRCh37X44,382,885 - 44,402,105 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X44,267,847 - 44,287,160 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X44,139,158 - 44,158,470NCBI
CeleraX48,519,971 - 48,539,287 (-)NCBICelera
Cytogenetic MapXp11.3NCBI
HuRefX42,105,885 - 42,125,812 (-)NCBIHuRef
CHM1_1X44,415,841 - 44,435,193 (-)NCBICHM1_1
T2T-CHM13v2.0X43,930,462 - 43,949,676 (-)NCBIT2T-CHM13v2.0
Fundc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X17,386,206 - 17,438,600 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX17,422,803 - 17,438,564 (-)EnsemblGRCm39 Ensembl
GRCm38X17,519,967 - 17,572,329 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX17,556,564 - 17,572,325 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X17,133,695 - 17,149,423 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X16,713,528 - 16,729,256 (-)NCBIMGSCv36mm8
CeleraX15,168,138 - 15,183,866 (-)NCBICelera
Cytogenetic MapXA1.2NCBI
cM MapX12.8NCBI
Fundc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X7,666,787 - 7,683,443 (+)NCBIGRCr8
mRatBN7.2X5,083,635 - 5,100,293 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX5,083,617 - 5,100,284 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX5,136,794 - 5,153,466 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X8,612,588 - 8,629,261 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X4,932,812 - 4,949,480 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X5,549,468 - 5,566,125 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX5,549,419 - 5,566,127 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X6,329,908 - 6,346,565 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X16,672,818 - 16,689,475 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX5,589,536 - 5,606,194 (+)NCBICelera
Cytogenetic MapXq11NCBI
Fundc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555163,648,629 - 3,664,032 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555163,648,629 - 3,664,032 (+)NCBIChiLan1.0ChiLan1.0
FUNDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X46,169,288 - 46,188,398 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X46,172,661 - 46,191,723 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X36,970,051 - 36,989,276 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X44,790,550 - 44,809,318 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX44,790,550 - 44,809,793 (-)Ensemblpanpan1.1panPan2
FUNDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X38,492,470 - 38,505,512 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX38,492,720 - 38,505,424 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX25,720,234 - 25,733,280 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X38,581,261 - 38,594,306 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX38,577,447 - 38,594,178 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X38,614,716 - 38,627,760 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X38,594,940 - 38,607,984 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X38,693,558 - 38,706,604 (-)NCBIUU_Cfam_GSD_1.0
Fundc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X30,803,266 - 30,816,345 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650210,643,071 - 10,657,134 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650210,643,172 - 10,657,118 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUNDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX39,724,998 - 39,737,532 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X39,726,194 - 39,737,663 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X44,109,888 - 44,121,363 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FUNDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X41,685,945 - 41,705,037 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660766,906,483 - 6,926,162 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006909   ⟹   ENSHGLP00000006825
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624887626,321 - 641,293 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000006910   ⟹   ENSHGLP00000006826
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624887626,682 - 641,150 (-)Ensembl
RefSeq Acc Id: XM_004871533   ⟹   XP_004871590
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624887626,321 - 641,296 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004871590 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB12644 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006825
GenBank Protein JAN96228 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004871590   ⟸   XM_004871533
- UniProtKB: G5BTN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006825   ⟸   ENSHGLT00000006909
RefSeq Acc Id: ENSHGLP00000006826   ⟸   ENSHGLT00000006910


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004981 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006909 ENTREZGENE
InterPro FUN14 UniProtKB/TrEMBL
KEGG Report hgl:101705175 UniProtKB/TrEMBL
NCBI Gene Fundc1 ENTREZGENE
PANTHER FUN14 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR21346 UniProtKB/TrEMBL
Pfam FUN14 UniProtKB/TrEMBL
UniProt G5BTN3 ENTREZGENE, UniProtKB/TrEMBL