Rpl27 (ribosomal protein L27) - Rat Genome Database

Name: Rpl27
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rpl27 (ribosomal protein L27) Chinchilla lanigera

Analyze

Symbol:

Rpl27

Name:

ribosomal protein L27

RGD ID:

8815434

Description:

ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN response to aldosterone (ortholog); rRNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Diamond-Blackfan anemia 16 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

60S ribosomal protein L27

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPL27 (ribosomal protein L27)	NCBI	Ortholog
Mus musculus (house mouse):	Rpl27 (ribosomal protein L27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rpl27 (ribosomal protein L27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPL27 (ribosomal protein L27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPL27 (ribosomal protein L27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpl27 (ribosomal protein L27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPL27 (ribosomal protein L27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPL27 (ribosomal protein L27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpl27 (ribosomal protein L27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	16,788,551 - 16,790,458 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	16,788,505 - 16,790,468 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Diamond-Blackfan anemia 16 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

response to aldosterone (ISO)

rRNA processing (ISO)

Cellular Component

cytoplasm (ISO)

cytoplasmic side of rough endoplasmic reticulum membrane (ISO)

cytosolic large ribosomal subunit (ISO)

cytosolic ribosome (ISO)

large ribosomal subunit (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

ribonucleoprotein complex (ISO)

ribosome (ISO)

synapse (ISO)

Molecular Function

protein binding (ISO)

structural constituent of ribosome (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Rpl27
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	16,788,551 - 16,790,458 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	16,788,505 - 16,790,468 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPL27
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	42,998,273 - 43,002,959 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	42,998,273 - 43,002,959 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	41,150,290 - 41,154,976 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	38,403,972 - 38,408,502 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	38,403,971 - 38,408,495	NCBI
Celera	17	37,806,712 - 37,811,248 (+)	NCBI		Celera
Cytogenetic Map	17	q21.31	NCBI
HuRef	17	36,916,138 - 36,920,742 (+)	NCBI		HuRef
CHM1_1	17	41,385,958 - 41,390,494 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	43,855,556 - 43,860,248 (+)	NCBI		T2T-CHM13v2.0

Rpl27
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	101,333,071 - 101,336,422 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	101,333,124 - 101,336,355 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	101,442,245 - 101,445,596 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	101,442,298 - 101,445,529 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	101,303,559 - 101,306,910 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	101,258,505 - 101,261,623 (+)	NCBI		MGSCv36	mm8
Celera	11	113,129,678 - 113,133,029 (+)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	65.05	NCBI

Rpl27
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	86,875,758 - 86,879,457 (+)	NCBI		GRCr8
mRatBN7.2	10	86,375,511 - 86,379,210 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	86,375,454 - 86,379,193 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	91,412,781 - 91,416,632 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	90,887,744 - 90,891,601 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	86,281,048 - 86,284,905 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	89,352,864 - 89,356,563 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	89,352,835 - 89,356,547 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	89,150,880 - 89,154,579 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	90,469,811 - 90,473,510 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	90,484,445 - 90,487,880 (+)	NCBI
Celera	10	85,092,998 - 85,096,697 (+)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

RPL27
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	21,989,296 - 21,993,885 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	23,878,575 - 23,883,254 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	14,321,438 - 14,326,091 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	14,548,798 - 14,553,727 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	14,548,809 - 14,553,728 (-)	Ensembl	panpan1.1		panPan2

RPL27
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	20,063,524 - 20,066,915 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	20,063,525 - 20,066,892 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	19,525,132 - 19,528,523 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	20,781,953 - 20,785,344 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	20,781,954 - 20,785,321 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	19,567,043 - 19,570,433 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	19,833,775 - 19,837,166 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	19,935,846 - 19,939,237 (-)	NCBI		UU_Cfam_GSD_1.0

Rpl27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	19,375,295 - 19,378,253 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	17,696,886 - 17,700,241 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	17,696,911 - 17,699,844 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPL27
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	19,892,217 - 19,894,504 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	19,892,210 - 19,894,202 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	19,987,410 - 19,989,401 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPL27
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	63,287,493 - 63,292,054 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	63,287,208 - 63,292,473 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	34,074,547 - 34,079,136 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpl27
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	1,268,207 - 1,270,422 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	1,268,207 - 1,270,433 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005394492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01043707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01025873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000023867 ⟹ ENSCLAP00000023642

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955451	16,788,551 - 16,790,458 (+)	Ensembl

RefSeq Acc Id:

XM_005394492 ⟹ XP_005394549

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	16,788,505 - 16,790,468 (+)	NCBI

Sequence:

show sequence

GAGGGACCGGAAGTGACGTTGCCGACACAGGGTCAAAGGTTAGCGGAAGTGTGCTTCCTTCTTT
TCCGCTGTAACCCGACTCAGCGCTGTCGCCATGGGCAAGTTCATGAAACCGGGGAAGGTGGTGC
TGGTCCTGGCCGGACGCTACTCCGGACGCAAAGCCGTCATCGTGAAGAACATCGACGACGGCAC
CTCCGACCGCCCCTACAGCCACGCTCTGGTGGCCGGGATTGACCGCTATCCCCGCAAAGTGACG
GCCGCCATGGGCAAGAAGAAGATCGCCAAGAGGTCGAAGATCAAGTCCTTCGTGAAGGTGTACA
ACTACAACCACCTCATGCCCACACGGTACTCCGTGGACATCCCCCTGGACAAGACGGTGGTCAA
CAAGGACGTCTTCCGAGACCCGGCCCTCAAGCGCAAGGCCCGGCGTGAGGCGAAGGTCAAGTTC
GAGGAGAGGTACAAGACCGGCAAGAACAAGTGGTTCTTCCAGAAGCTCCGCTTTTAGCTGTTTT
TGTTTCCATCATTAAAAATTAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_005394493 ⟹ XP_005394550

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	16,788,551 - 16,790,468 (+)	NCBI

Sequence:

show sequence

AAGTGTGCTTCCTTCTTTTCCGCTGTAACCCGACTCAGCGCTGTCGGTGGGTAGGGGCTCGGGC
AAGGTCTCCTAATCTCCCGCCATCCGCGATCGAGGGTTTCCCCCACGGCCATGGGCAAGTTCAT
GAAACCGGGGAAGGTGGTGCTGGTCCTGGCCGGACGCTACTCCGGACGCAAAGCCGTCATCGTG
AAGAACATCGACGACGGCACCTCCGACCGCCCCTACAGCCACGCTCTGGTGGCCGGGATTGACC
GCTATCCCCGCAAAGTGACGGCCGCCATGGGCAAGAAGAAGATCGCCAAGAGGTCGAAGATCAA
GTCCTTCGTGAAGGTGTACAACTACAACCACCTCATGCCCACACGGTACTCCGTGGACATCCCC
CTGGACAAGACGGTGGTCAACAAGGACGTCTTCCGAGACCCGGCCCTCAAGCGCAAGGCCCGGC
GTGAGGCGAAGGTCAAGTTCGAGGAGAGGTACAAGACCGGCAAGAACAAGTGGTTCTTCCAGAA
GCTCCGCTTTTAGCTGTTTTTGTTTCCATCATTAAAAATTAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005394549	(Get FASTA)	NCBI Sequence Viewer
	XP_005394550	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000002433.1
	ENSCLAP00000023642
	ENSCLAP00000023642.1

RefSeq Acc Id:	XP_005394549 ⟸ XM_005394492
- UniProtKB:	A0A8C2W3Z2 (UniProtKB/TrEMBL), A0A8C2YJ40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAK RSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK WFFQKLRF hide sequence

RefSeq Acc Id:	XP_005394550 ⟸ XM_005394493
- UniProtKB:	A0A8C2W3Z2 (UniProtKB/TrEMBL), A0A8C2YJ40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAK RSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK WFFQKLRF hide sequence

RefSeq Acc Id:

ENSCLAP00000023642 ⟸ ENSCLAT00000023867

Protein Domains

KOW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000001763	UniProtKB/TrEMBL
	ENSCLAG00000016219	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000002484.1	UniProtKB/TrEMBL
	ENSCLAT00000023867	ENTREZGENE
	ENSCLAT00000023867.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.30.770	UniProtKB/TrEMBL
InterPro	KOW	UniProtKB/TrEMBL
	KOW_RPL27	UniProtKB/TrEMBL
	L27e_sf	UniProtKB/TrEMBL
	Ribosomal_L27e	UniProtKB/TrEMBL
	Ribosomal_L27e_CS	UniProtKB/TrEMBL
	Translation_prot_SH3-like_sf	UniProtKB/TrEMBL
NCBI Gene	Rpl27	ENTREZGENE
PANTHER	60S RIBOSOMAL PROTEIN L27	UniProtKB/TrEMBL
	PTHR10497	UniProtKB/TrEMBL
Pfam	KOW	UniProtKB/TrEMBL
	Ribosomal_L27e	UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_L27E	UniProtKB/TrEMBL
SMART	KOW	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50104	UniProtKB/TrEMBL
UniProt	A0A8C2W3Z2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YJ40	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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