Rpl27 (ribosomal protein L27) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rpl27 (ribosomal protein L27) Heterocephalus glaber
Analyze
Symbol: Rpl27
Name: ribosomal protein L27
RGD ID: 18922478
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN response to aldosterone (ortholog); rRNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Diamond-Blackfan anemia 16 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L27
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,268,207 - 1,270,422 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,268,207 - 1,270,433 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rpl27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,268,207 - 1,270,422 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,268,207 - 1,270,433 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RPL27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,998,273 - 43,002,959 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,998,273 - 43,002,959 (+)EnsemblGRCh38hg38GRCh38
GRCh371741,150,290 - 41,154,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361738,403,972 - 38,408,502 (+)NCBINCBI36Build 36hg18NCBI36
Build 341738,403,971 - 38,408,495NCBI
Celera1737,806,712 - 37,811,248 (+)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1736,916,138 - 36,920,742 (+)NCBIHuRef
CHM1_11741,385,958 - 41,390,494 (+)NCBICHM1_1
T2T-CHM13v2.01743,855,556 - 43,860,248 (+)NCBIT2T-CHM13v2.0
Rpl27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,333,071 - 101,336,422 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,333,124 - 101,336,355 (+)EnsemblGRCm39 Ensembl
GRCm3811101,442,245 - 101,445,596 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,442,298 - 101,445,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711101,303,559 - 101,306,910 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611101,258,505 - 101,261,623 (+)NCBIMGSCv36mm8
Celera11113,129,678 - 113,133,029 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1165.05NCBI
Rpl27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,875,758 - 86,879,457 (+)NCBIGRCr8
mRatBN7.21086,375,511 - 86,379,210 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,375,454 - 86,379,193 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,412,781 - 91,416,632 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,887,744 - 90,891,601 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,281,048 - 86,284,905 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,352,864 - 89,356,563 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,352,835 - 89,356,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,150,880 - 89,154,579 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,469,811 - 90,473,510 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11090,484,445 - 90,487,880 (+)NCBI
Celera1085,092,998 - 85,096,697 (+)NCBICelera
Cytogenetic Map10q31NCBI
Rpl27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,788,551 - 16,790,458 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,788,505 - 16,790,468 (+)NCBIChiLan1.0ChiLan1.0
RPL27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21921,989,296 - 21,993,885 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11723,878,575 - 23,883,254 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,321,438 - 14,326,091 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,548,798 - 14,553,727 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,548,809 - 14,553,728 (-)Ensemblpanpan1.1panPan2
RPL27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,063,524 - 20,066,915 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,063,525 - 20,066,892 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,525,132 - 19,528,523 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,781,953 - 20,785,344 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,781,954 - 20,785,321 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,567,043 - 19,570,433 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,833,775 - 19,837,166 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,935,846 - 19,939,237 (-)NCBIUU_Cfam_GSD_1.0
Rpl27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,375,295 - 19,378,253 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,696,886 - 17,700,241 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,696,911 - 17,699,844 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,892,217 - 19,894,504 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,892,210 - 19,894,202 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,987,410 - 19,989,401 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,287,493 - 63,292,054 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,287,208 - 63,292,473 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,074,547 - 34,079,136 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023891   ⟹   ENSHGLP00000023673
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247951,268,207 - 1,270,422 (-)Ensembl
RefSeq Acc Id: XM_004859289   ⟹   XP_004859346
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247951,268,207 - 1,270,433 (-)NCBI
RefSeq Acc Id: XM_004859290   ⟹   XP_004859347
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247951,268,207 - 1,270,352 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004859346 (Get FASTA)   NCBI Sequence Viewer  
  XP_004859347 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10752 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023673
  ENSHGLP00100052028
GenBank Protein JAN96881 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004859346   ⟸   XM_004859289
- UniProtKB: G5BN91 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859347   ⟸   XM_004859290
- UniProtKB: G5BN91 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000023673   ⟸   ENSHGLT00000023891


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016890 Ensembl, ENTREZGENE
  ENSHGLG00100037577 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000023891 ENTREZGENE
  ENSHGLT00100075538 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.770 UniProtKB/TrEMBL
InterPro KOW UniProtKB/TrEMBL
  KOW_RPL27 UniProtKB/TrEMBL
  L27e_sf UniProtKB/TrEMBL
  Ribosomal_L27e UniProtKB/TrEMBL
  Ribosomal_L27e_CS UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
KEGG Report hgl:101706923 UniProtKB/TrEMBL
NCBI Gene Rpl27 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L27 UniProtKB/TrEMBL
  PTHR10497 UniProtKB/TrEMBL
Pfam KOW UniProtKB/TrEMBL
  Ribosomal_L27e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L27E UniProtKB/TrEMBL
SMART KOW UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt G5BN91 ENTREZGENE, UniProtKB/TrEMBL