Cldn34 (claudin 34) - Rat Genome Database

Name: Cldn34
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cldn34 (claudin 34) Chinchilla lanigera

Analyze

Symbol:

Cldn34

Name:

claudin 34

RGD ID:

8732142

Description:

ASSOCIATED WITH autistic disorder (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

claudin-34

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLDN34 (claudin 34)	NCBI	Ortholog
Mus musculus (house mouse):	Cldn34a (claudin 34A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cldn34a (claudin 34A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLDN34 (claudin 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CLDN34 (claudin 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cldn34 (claudin 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CLDN34 (claudin 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cldn34 (claudin 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955544	3,190,014 - 3,190,573 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Cldn34
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955544	3,190,014 - 3,190,573 (+)	NCBI	ChiLan1.0	ChiLan1.0

CLDN34
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	9,967,358 - 9,968,352 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	9,967,358 - 9,968,352 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	9,935,398 - 9,936,392 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Celera	X	14,106,681 - 14,107,325 (+)	NCBI		Celera
Cytogenetic Map	X	p22.2	NCBI
HuRef	X	7,767,169 - 7,767,813 (+)	NCBI		HuRef
CHM1_1	X	9,965,818 - 9,966,462 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	9,549,941 - 9,550,935 (+)	NCBI		T2T-CHM13v2.0

Cldn34a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	151,320,524 - 151,347,194 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	151,320,497 - 151,347,193 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	152,537,528 - 152,564,198 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	152,537,501 - 152,564,197 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	148,997,877 - 148,998,512 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	148,997,877 - 148,998,512 (+)	NCBI		MGSCv36	mm8
Celera	X	136,689,100 - 136,689,735 (-)	NCBI		Celera
Cytogenetic Map	X	F3	NCBI
cM Map	X	68.46	NCBI

Cldn34a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	25,164,586 - 25,233,074 (+)	NCBI		GRCr8
mRatBN7.2	X	21,717,101 - 21,737,363 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	21,736,419 - 21,737,054 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	22,638,720 - 22,639,355 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	26,059,696 - 26,060,331 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	22,318,369 - 22,319,004 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	23,371,171 - 23,415,287 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	23,414,354 - 23,414,989 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	23,785,424 - 23,832,886 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	42,210,493 - 42,211,128 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	22,158,824 - 22,159,459 (+)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

CLDN34
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	11,762,676 - 11,773,083 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	11,766,343 - 11,776,750 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	2,591,451 - 2,599,328 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	9,850,227 - 9,850,932 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	9,850,227 - 9,850,871 (+)	Ensembl	panpan1.1		panPan2

CLDN34
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	6,643,967 - 6,657,995 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	6,649,645 - 6,658,010 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	6,600,165 - 6,614,221 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	6,590,926 - 6,604,982 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	6,581,258 - 6,595,313 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	6,616,449 - 6,630,505 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	6,606,843 - 6,620,899 (+)	NCBI		UU_Cfam_GSD_1.0

Cldn34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404953	4,336,486 - 4,346,248 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936644	30,632 - 31,270 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLDN34
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	8,416,983 - 8,423,683 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666056	10,097,322 - 10,098,753 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cldn34
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624782	12,756,563 - 12,790,973 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013508184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01071750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013508184 ⟹ XP_013363638

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955544	3,190,014 - 3,190,573 (+)	NCBI

Sequence:

show sequence

ATGACCTTTCTTGTCCATACTGCCGATTGCCAGGTCCCAGGCTGATCTGTTGCCACCATCACAT
GGATCCTCTGCAGCACTTCCATGGGCCTCNTGGAGTGGCACATGTGGCACATGGATGACCTGTG
GCTCTCCTACGCTGGCACCATCTGTGTGGGAGTATGAAAAGTCCACATTTACCACCATCACAAC
TGCAGCAAAGTCAGAATGTGTCACCCACACACCTACAGTGATACATTCCTCGCTCCCAGTATAA
GCACAGCTCAGCACTTCCTGGTGGTCACCAGCACTCTAGGGCTCTTTGCCAAAGCCTTCACTAT
TTTAGCACTCAGGAACTCACATGTGGGTATCCTACAGAAGAATGTCATCCACATCCCATTCATC
TTTGCATGGGGTCTAGTCACTGCTGCTAGTGGATGCATGTCCATTGCTGTTCTCTGGAATCACT
ACTATGTCACAAATATCAAGTGGATTCACTTCCTACCATCTTTCCATGTCCCCAATACTCAGGA
AAGTGGAAGTGGCATGCTCATGGCAATGCCAGCTGCATCCATAATGTAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_013363638	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013363638 ⟸ XM_013508184
- Sequence:	show sequence MTFLVHTADCQVPGXSVATITWILCSTSMGLXEWHMWHMDDLWLSYAGTICVGVXKVHIYHHHN CSKVRMCHPHTYSDTFLAPSISTAQHFLVVTSTLGLFAKAFTILALRNSHVGILQKNVIHIPFI FAWGLVTAASGCMSIAVLWNHYYVTNIKWIHFLPSFHVPNTQESGSGMLMAMPAASIM hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC102009880	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Cldn34	claudin 34	LOC102009880	uncharacterized LOC102009880	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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