Cldn34 (claudin 34) - Rat Genome Database

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Gene: Cldn34 (claudin 34) Heterocephalus glaber
Analyze
Symbol: Cldn34
Name: claudin 34
RGD ID: 18921628
Description: ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN bicellular tight junction assembly (inferred); cell adhesion (inferred); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN bicellular tight junction (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Claudin-22; claudin-34
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478212,756,563 - 12,790,973 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Cldn34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478212,756,563 - 12,790,973 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CLDN34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X9,967,358 - 9,968,352 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX9,967,358 - 9,968,352 (+)EnsemblGRCh38hg38GRCh38
GRCh37X9,935,398 - 9,936,392 (+)NCBIGRCh37GRCh37hg19GRCh37
CeleraX14,106,681 - 14,107,325 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX7,767,169 - 7,767,813 (+)NCBIHuRef
CHM1_1X9,965,818 - 9,966,462 (+)NCBICHM1_1
T2T-CHM13v2.0X9,549,941 - 9,550,935 (+)NCBIT2T-CHM13v2.0
Cldn34a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X151,320,524 - 151,347,194 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX151,320,497 - 151,347,193 (+)EnsemblGRCm39 Ensembl
GRCm38X152,537,528 - 152,564,198 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX152,537,501 - 152,564,197 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X148,997,877 - 148,998,512 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X148,997,877 - 148,998,512 (+)NCBIMGSCv36mm8
CeleraX136,689,100 - 136,689,735 (-)NCBICelera
Cytogenetic MapXF3NCBI
cM MapX68.46NCBI
Cldn34a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X25,164,586 - 25,233,074 (+)NCBIGRCr8
mRatBN7.2X21,717,101 - 21,737,363 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX21,736,419 - 21,737,054 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX22,638,720 - 22,639,355 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X26,059,696 - 26,060,331 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X22,318,369 - 22,319,004 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X23,371,171 - 23,415,287 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX23,414,354 - 23,414,989 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X23,785,424 - 23,832,886 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X42,210,493 - 42,211,128 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX22,158,824 - 22,159,459 (+)NCBICelera
Cytogenetic MapXq13NCBI
Cldn34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555443,190,014 - 3,190,573 (+)NCBIChiLan1.0ChiLan1.0
CLDN34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X11,762,676 - 11,773,083 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X11,766,343 - 11,776,750 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X2,591,451 - 2,599,328 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X9,850,227 - 9,850,932 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX9,850,227 - 9,850,871 (+)Ensemblpanpan1.1panPan2
CLDN34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X6,643,967 - 6,657,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX6,649,645 - 6,658,010 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX6,600,165 - 6,614,221 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X6,590,926 - 6,604,982 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X6,581,258 - 6,595,313 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X6,616,449 - 6,630,505 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X6,606,843 - 6,620,899 (+)NCBIUU_Cfam_GSD_1.0
Cldn34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049534,336,486 - 4,346,248 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493664430,632 - 31,270 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X8,416,983 - 8,423,683 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605610,097,322 - 10,098,753 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021237377   ⟹   XP_021093036
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,757,716 - 12,764,140 (-)NCBI
RefSeq Acc Id: XR_002386596
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,756,563 - 12,790,770 (-)NCBI
RefSeq Acc Id: XR_002386597
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,756,563 - 12,790,766 (-)NCBI
RefSeq Acc Id: XR_002386598
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,756,563 - 12,790,770 (-)NCBI
RefSeq Acc Id: XR_002386599
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,756,563 - 12,790,765 (-)NCBI
RefSeq Acc Id: XR_002386600
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,756,563 - 12,790,954 (-)NCBI
RefSeq Acc Id: XR_002386601
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,756,563 - 12,790,759 (-)NCBI
RefSeq Acc Id: XR_002386602
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,756,563 - 12,790,954 (-)NCBI
RefSeq Acc Id: XR_002386603
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,756,563 - 12,790,954 (-)NCBI
RefSeq Acc Id: XR_002386604
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,756,563 - 12,790,973 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021093036 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB11846 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00100056038
Reference Protein Sequences
RefSeq Acc Id: XP_021093036   ⟸   XM_021237377
- UniProtKB: G5BRB4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00100047597 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00100078157 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
NCBI Gene Cldn34 ENTREZGENE
PANTHER CLAUDIN UniProtKB/TrEMBL
  CLAUDIN-34 UniProtKB/TrEMBL
Pfam Claudin_2 UniProtKB/TrEMBL
UniProt G5BRB4 ENTREZGENE, UniProtKB/TrEMBL