Bnip3 (BCL2 interacting protein 3) - Rat Genome Database

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Gene: Bnip3 (BCL2 interacting protein 3) Chinchilla lanigera
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Symbol: Bnip3
Name: BCL2 interacting protein 3
RGD ID: 8731175
Description: ENCODES a protein that exhibits GTPase binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN autophagic cell death (ortholog); brown fat cell differentiation (ortholog); cardiac muscle cell apoptotic process (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; intrinsic apoptotic pathway; mitochondrial autophagy pathway; ASSOCIATED WITH Chronic Intermittent Hypoxia (ortholog); chronic obstructive pulmonary disease (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); mitochondrial membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; BCL2/adenovirus E1B 19kDa interacting protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554779,621,812 - 9,638,099 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554779,621,812 - 9,630,406 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
autophagic cell death  (ISO)
brown fat cell differentiation  (ISO)
cardiac muscle cell apoptotic process  (ISO)
cellular response to cobalt ion  (ISO)
cellular response to hydrogen peroxide  (ISO)
cellular response to hypoxia  (ISO)
cellular response to mechanical stimulus  (ISO)
cerebral cortex development  (ISO)
defense response to virus  (ISO)
granzyme-mediated programmed cell death signaling pathway  (ISO)
intrinsic apoptotic signaling pathway  (ISO)
intrinsic apoptotic signaling pathway in response to hypoxia  (ISO)
mitochondrial fragmentation involved in apoptotic process  (ISO)
mitochondrial outer membrane permeabilization  (ISO)
mitochondrial protein catabolic process  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of membrane potential  (ISO)
negative regulation of mitochondrial fusion  (ISO)
negative regulation of mitochondrial membrane permeability involved in apoptotic process  (ISO)
negative regulation of mitochondrial membrane potential  (ISO)
negative regulation of programmed cell death  (ISO)
negative regulation of reactive oxygen species metabolic process  (ISO)
neuron apoptotic process  (ISO)
oligodendrocyte differentiation  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of autophagy of mitochondrion  (ISO)
positive regulation of cardiac muscle cell apoptotic process  (ISO)
positive regulation of cellular process  (ISO)
positive regulation of macroautophagy  (ISO)
positive regulation of mitochondrial calcium ion concentration  (ISO)
positive regulation of mitochondrial fission  (ISO)
positive regulation of programmed cell death  (ISO)
positive regulation of protein-containing complex disassembly  (ISO)
positive regulation of release of cytochrome c from mitochondria  (ISO)
reactive oxygen species metabolic process  (ISO)
regulation of aerobic respiration  (ISO)
regulation of mitochondrial membrane permeability  (ISO)
regulation of mitochondrion organization  (ISO)
response to axon injury  (ISO)
response to bacterium  (ISO)
response to hyperoxia  (ISO)
response to hypoxia  (ISO)
response to oxygen-glucose deprivation  (ISO)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bnip3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554779,621,812 - 9,638,099 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554779,621,812 - 9,630,406 (-)NCBIChiLan1.0ChiLan1.0
BNIP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810131,967,684 - 131,981,923 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10131,967,684 - 131,981,967 (-)EnsemblGRCh38hg38GRCh38
GRCh3710133,781,188 - 133,795,427 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610133,631,194 - 133,645,425 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410133,631,193 - 133,645,425NCBI
Celera10127,425,370 - 127,439,605 (-)NCBICelera
Cytogenetic Map10q26.3NCBI
HuRef10127,330,366 - 127,344,602 (-)NCBIHuRef
CHM1_110134,062,287 - 134,076,530 (-)NCBICHM1_1
T2T-CHM13v2.010132,907,935 - 132,922,186 (-)NCBIT2T-CHM13v2.0
Bnip3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397138,492,565 - 138,511,235 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7138,492,565 - 138,511,248 (-)EnsemblGRCm39 Ensembl
GRCm387138,890,836 - 138,909,506 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7138,890,836 - 138,909,519 (-)EnsemblGRCm38mm10GRCm38
MGSCv377146,082,519 - 146,101,189 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367138,729,179 - 138,747,849 (-)NCBIMGSCv36mm8
Celera7138,707,907 - 138,726,495 (-)NCBICelera
Cytogenetic Map7F4NCBI
cM Map782.95NCBI
Bnip3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81203,137,778 - 203,154,962 (-)NCBIGRCr8
mRatBN7.21193,708,164 - 193,725,348 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1193,708,167 - 193,725,359 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1202,078,679 - 202,095,736 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01209,213,763 - 209,230,820 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01201,887,245 - 201,904,303 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01211,248,098 - 211,265,282 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,248,098 - 211,265,282 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01218,174,697 - 218,191,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41198,683,009 - 198,700,075 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11198,833,000 - 198,850,067 (-)NCBI
Celera1191,399,941 - 191,417,104 (-)NCBICelera
Cytogenetic Map1q41NCBI
BNIP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28143,924,591 - 143,938,927 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110143,929,948 - 143,944,284 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010128,671,663 - 128,685,952 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110132,857,375 - 132,871,628 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10132,858,211 - 132,871,634 (-)Ensemblpanpan1.1panPan2
BNIP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,037,681 - 40,050,499 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,038,643 - 40,049,797 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,097,449 - 40,110,338 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02840,678,012 - 40,690,914 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2840,676,814 - 40,689,813 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12840,162,663 - 40,175,507 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02840,150,654 - 40,163,548 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02840,549,677 - 40,562,589 (-)NCBIUU_Cfam_GSD_1.0
Bnip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072137,077,703 - 7,111,927 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648618,448,494 - 18,455,927 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648618,449,371 - 18,460,435 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BNIP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14140,362,127 - 140,371,907 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114140,362,123 - 140,371,951 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214152,194,909 - 152,204,744 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BNIP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19124,570,958 - 124,586,002 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9124,568,695 - 124,585,980 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604886,009,563 - 86,024,560 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bnip3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473714,848,350 - 14,862,965 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473714,848,355 - 14,863,731 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000003767   ⟹   ENSCLAP00000003691
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554779,621,812 - 9,638,099 (-)Ensembl
RefSeq Acc Id: XM_005402035   ⟹   XP_005402092
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554779,621,812 - 9,630,406 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005402092 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003691
  ENSCLAP00000003691.1
RefSeq Acc Id: XP_005402092   ⟸   XM_005402035
- UniProtKB: A0A8C2UNZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000003691   ⟸   ENSCLAT00000003767


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002633 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003767 ENTREZGENE
  ENSCLAT00000003767.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.1020 UniProtKB/TrEMBL
InterPro BNIP3 UniProtKB/TrEMBL
NCBI Gene LOC102022813 ENTREZGENE
PANTHER BCL2/ADENOVIRUS E1B 19 KDA PROTEIN-INTERACTING PROTEIN 3 UniProtKB/TrEMBL
  PTHR15186 UniProtKB/TrEMBL
Pfam BNIP3 UniProtKB/TrEMBL
UniProt A0A8C2UNZ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Bnip3  BCL2 interacting protein 3    BCL2/adenovirus E1B 19kDa interacting protein 3  Symbol and/or name change 5135510 APPROVED
2015-08-25 Bnip3  BCL2/adenovirus E1B 19kDa interacting protein 3  LOC102022813  BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like  Symbol and/or name change 5135510 APPROVED