Zfp36l1 (zinc finger protein 36, C3H type-like 1) - Rat Genome Database

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Gene: Zfp36l1 (zinc finger protein 36, C3H type-like 1) Mus musculus
Analyze
Symbol: Zfp36l1
Name: zinc finger protein 36, C3H type-like 1
RGD ID: 736581
MGI Page MGI
Description: Enables mRNA 3'-UTR AU-rich region binding activity. Involved in several processes, including 3'-UTR-mediated mRNA destabilization; cellular response to organonitrogen compound; and intracellular signaling cassette. Acts upstream of or within several processes, including chordate embryonic development; circulatory system development; and post-transcriptional regulation of gene expression. Located in cytoplasm and nucleus. Part of ribonucleoprotein complex. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; genitourinary system; and sensory organ. Orthologous to human ZFP36L1 (ZFP36 ring finger protein like 1).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AW742437; AW743212; Berg36; Brf; Brf1; butyrate response factor 1; cMG1; D530020L18Rik; ERF1; mRNA decay activator protein ZFP36L1; TIS1; TIS11b; TPA-induced sequence 11b; ZFP36-like 1; zinc finger protein 36, C3H1 type-like 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Zfp36l1-ps  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391280,154,534 - 80,159,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1280,154,528 - 80,159,787 (-)EnsemblGRCm39 Ensembl
GRCm381280,107,760 - 80,113,013 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1280,107,754 - 80,113,013 (-)EnsemblGRCm38mm10GRCm38
MGSCv371281,208,747 - 81,214,000 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361281,026,600 - 81,031,853 (-)NCBIMGSCv36mm8
Celera1281,572,651 - 81,577,898 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1236.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-colchicine  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
adenine  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
C.I. Natural Red 20  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carboplatin  (ISO)
chloropicrin  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
depsipeptide  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dieldrin  (ISO)
diethylstilbestrol  (EXP)
doxorubicin  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
fluoranthene  (EXP)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glyphosate  (EXP)
iron dichloride  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (EXP,ISO)
medroxyprogesterone acetate  (ISO)
menadione  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (ISO)
nickel subsulfide  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
phenobarbital  (EXP,ISO)
pirinixic acid  (EXP,ISO)
progesterone  (ISO)
promegestone  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
senecionine  (EXP)
Shikonin  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
Soman  (ISO)
succimer  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
tetraphene  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
3'-UTR-mediated mRNA destabilization  (IDA,IMP,ISO)
apoptotic process  (IMP)
cell population proliferation  (IMP)
cellular response to cAMP  (IDA,ISO)
cellular response to epidermal growth factor stimulus  (ISO)
cellular response to fibroblast growth factor stimulus  (IDA)
cellular response to glucocorticoid stimulus  (ISO)
cellular response to hypoxia  (ISO)
cellular response to insulin stimulus  (ISO)
cellular response to peptide hormone stimulus  (IDA,ISO)
cellular response to raffinose  (IDA)
cellular response to salt stress  (IDA)
cellular response to transforming growth factor beta stimulus  (ISO)
cellular response to tumor necrosis factor  (ISO)
chorio-allantoic fusion  (IMP)
embryonic organ development  (IMP)
ERK1 and ERK2 cascade  (ISO)
heart development  (IMP)
MAPK cascade  (IDA,IMP,ISO)
mesendoderm development  (IDA)
mRNA catabolic process  (ISO)
mRNA processing  (IEA)
mRNA transport  (ISO)
multicellular organism growth  (IMP)
negative regulation of erythrocyte differentiation  (ISO)
negative regulation of mitotic cell cycle phase transition  (IMP)
neural tube development  (IMP)
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  (IDA)
nuclear-transcribed mRNA catabolic process, deadenylation-independent decay  (ISO)
p38MAPK cascade  (IDA)
phosphatidylinositol 3-kinase/protein kinase B signal transduction  (IMP,ISO)
positive regulation of fat cell differentiation  (IDA)
positive regulation of intracellular mRNA localization  (ISO)
positive regulation of monocyte differentiation  (ISO)
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  (ISO)
proepicardium development  (IMP)
regulation of B cell differentiation  (IMP)
regulation of gene expression  (ISO)
regulation of keratinocyte apoptotic process  (ISO)
regulation of keratinocyte differentiation  (ISO)
regulation of keratinocyte proliferation  (ISO)
regulation of mRNA 3'-end processing  (ISO)
regulation of mRNA stability  (IDA,IMP,ISO)
regulation of myoblast differentiation  (IMP)
regulation of stem cell proliferation  (IDA)
regulation of translation  (IMP)
response to wounding  (ISO)
spongiotrophoblast layer development  (IMP)
T cell differentiation in thymus  (IGI,IMP)
vasculogenesis  (IMP)

Cellular Component
cytoplasm  (IDA,ISO)
cytosol  (ISO)
nucleus  (IDA,ISO)
P-body  (ISO)
ribonucleoprotein complex  (IDA,IMP,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1996120   PMID:8595910   PMID:10349636   PMID:10751406   PMID:11042159   PMID:11076861   PMID:11796723   PMID:12082611   PMID:12477932   PMID:14610273   PMID:15226444   PMID:15465005  
PMID:15467755   PMID:15618518   PMID:15814898   PMID:16141072   PMID:16141073   PMID:17013884   PMID:17889962   PMID:18287559   PMID:18799693   PMID:19179481   PMID:20059953   PMID:20211142  
PMID:20412781   PMID:20622884   PMID:21267068   PMID:21862448   PMID:21873635   PMID:22367205   PMID:22639370   PMID:22701344   PMID:23284928   PMID:24154525   PMID:24553115   PMID:24700863  
PMID:24733888   PMID:25014217   PMID:25299049   PMID:26952984   PMID:27102483   PMID:27566829   PMID:28206953   PMID:28394372   PMID:28891815   PMID:29513653   PMID:30526691   PMID:30622281  
PMID:30858608   PMID:30982771   PMID:33306108   PMID:34321999   PMID:34774847   PMID:36385275   PMID:37903626  


Genomics

Comparative Map Data
Zfp36l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391280,154,534 - 80,159,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1280,154,528 - 80,159,787 (-)EnsemblGRCm39 Ensembl
GRCm381280,107,760 - 80,113,013 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1280,107,754 - 80,113,013 (-)EnsemblGRCm38mm10GRCm38
MGSCv371281,208,747 - 81,214,000 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361281,026,600 - 81,031,853 (-)NCBIMGSCv36mm8
Celera1281,572,651 - 81,577,898 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1236.46NCBI
ZFP36L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381468,787,655 - 68,796,243 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1468,787,660 - 68,796,253 (-)EnsemblGRCh38hg38GRCh38
GRCh371469,254,372 - 69,262,960 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361468,324,128 - 68,329,538 (-)NCBINCBI36Build 36hg18NCBI36
Build 341468,324,127 - 68,329,538NCBI
Celera1449,313,123 - 49,318,532 (-)NCBICelera
Cytogenetic Map14q24.1NCBI
HuRef1449,422,410 - 49,430,997 (-)NCBIHuRef
CHM1_11469,192,821 - 69,201,405 (-)NCBICHM1_1
T2T-CHM13v2.01462,994,521 - 63,003,244 (-)NCBIT2T-CHM13v2.0
Zfp36l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86104,663,396 - 104,669,815 (-)NCBIGRCr8
mRatBN7.2698,930,705 - 98,935,748 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl698,930,718 - 98,935,748 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx699,353,158 - 99,358,199 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0699,652,241 - 99,657,282 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0699,039,210 - 99,044,249 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06103,308,032 - 103,313,074 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6103,308,045 - 103,313,074 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06115,987,360 - 115,992,381 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46103,119,555 - 103,124,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16103,123,010 - 103,128,032 (-)NCBI
Celera697,294,425 - 97,299,423 (-)NCBICelera
Cytogenetic Map6q24NCBI
Zfp36l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554661,541,323 - 1,546,617 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554661,541,367 - 1,546,617 (+)NCBIChiLan1.0ChiLan1.0
ZFP36L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21569,902,452 - 69,911,122 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11469,118,962 - 69,127,451 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01449,372,058 - 49,379,116 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11468,247,341 - 68,255,805 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1468,247,347 - 68,255,805 (-)Ensemblpanpan1.1panPan2
ZFP36L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1842,663,287 - 42,668,665 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl842,664,223 - 42,668,514 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha842,352,777 - 42,358,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0842,893,323 - 42,898,832 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl842,893,325 - 42,898,755 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1842,507,658 - 42,513,193 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0842,582,437 - 42,587,961 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0842,941,809 - 42,947,345 (-)NCBIUU_Cfam_GSD_1.0
Zfp36l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864062,140,623 - 62,145,363 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649512,045,377 - 12,051,536 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649512,045,679 - 12,050,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP36L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl792,490,017 - 92,495,554 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1792,490,069 - 92,495,864 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2798,803,589 - 98,809,023 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP36L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12446,000,222 - 46,005,455 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2445,999,623 - 46,006,218 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605334,233,922 - 34,240,910 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp36l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473432,251,114 - 32,257,211 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473432,251,100 - 32,256,458 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp36l1
211 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1091
Count of miRNA genes:423
Interacting mature miRNAs:515
Transcripts:ENSMUST00000021552, ENSMUST00000165114
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
1301868Fbgl1_mfasting blood glucose 1 (mouse)Not determined127904016483162211Mouse

Markers in Region
AW743212  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381280,108,881 - 80,109,079UniSTSGRCm38
GRCm38X38,182,105 - 38,182,303UniSTSGRCm38
MGSCv371281,209,868 - 81,210,066UniSTSGRCm37
MGSCv37X35,535,282 - 35,535,480UniSTSGRCm37
Celera1281,573,774 - 81,573,972UniSTS
CeleraX25,827,683 - 25,827,881UniSTS
Cytogenetic Map12C3UniSTS
Whitehead/MRC_RH4763.0UniSTS
AW742437  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381280,109,449 - 80,109,705UniSTSGRCm38
MGSCv371281,210,436 - 81,210,692UniSTSGRCm37
Cytogenetic Map12C3UniSTS
Whitehead/MRC_RH12743.73UniSTS
G15966  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381280,107,752 - 80,107,958UniSTSGRCm38
MGSCv371281,208,739 - 81,208,945UniSTSGRCm37
Celera1281,572,643 - 81,572,849UniSTS
Cytogenetic Map12C3UniSTS
Brf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381280,108,143 - 80,108,320UniSTSGRCm38
MGSCv371281,209,130 - 81,209,307UniSTSGRCm37
Celera1281,573,034 - 81,573,211UniSTS
Cytogenetic Map12C3UniSTS
cM MapUN UniSTS
cM Map12 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000021552   ⟹   ENSMUSP00000021552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,154,528 - 80,159,787 (-)Ensembl
GRCm38.p6 Ensembl1280,107,754 - 80,113,013 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165114   ⟹   ENSMUSP00000127522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,155,472 - 80,159,772 (-)Ensembl
GRCm38.p6 Ensembl1280,108,698 - 80,112,998 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218835   ⟹   ENSMUSP00000151269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,156,326 - 80,159,773 (-)Ensembl
GRCm38.p6 Ensembl1280,109,552 - 80,112,999 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219642   ⟹   ENSMUSP00000151682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,155,530 - 80,159,768 (-)Ensembl
GRCm38.p6 Ensembl1280,108,756 - 80,112,994 (-)Ensembl
RefSeq Acc Id: NM_007564   ⟹   NP_031590
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391280,154,534 - 80,159,787 (-)NCBI
GRCm381280,107,760 - 80,113,013 (-)ENTREZGENE
MGSCv371281,208,747 - 81,214,000 (-)RGD
Celera1281,572,651 - 81,577,898 (-)RGD
cM Map12 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_031590   ⟸   NM_007564
- UniProtKB: P23950 (UniProtKB/Swiss-Prot),   Q543H2 (UniProtKB/TrEMBL),   Q91YI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000151269   ⟸   ENSMUST00000218835
RefSeq Acc Id: ENSMUSP00000151682   ⟸   ENSMUST00000219642
RefSeq Acc Id: ENSMUSP00000127522   ⟸   ENSMUST00000165114
RefSeq Acc Id: ENSMUSP00000021552   ⟸   ENSMUST00000021552
Protein Domains
C3H1-type   Tis11B-like protein N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P23950-F1-model_v2 AlphaFold P23950 1-338 view protein structure

Promoters
RGD ID:8678650
Promoter ID:EPDNEW_M17356
Type:multiple initiation site
Name:Zfp36l1_1
Description:Mus musculus zinc finger protein 36, C3H type-like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381280,113,010 - 80,113,070EPDNEW
RGD ID:6847017
Promoter ID:MM_ACW:11246
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ZFP36L1.BSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361281,211,441 - 81,213,077 (-)MPROMDB
RGD ID:6823529
Promoter ID:MM_KWN:12049
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_007564
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361281,213,511 - 81,214,962 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107946 AgrOrtholog
Ensembl Genes ENSMUSG00000021127 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021552 ENTREZGENE
  ENSMUST00000021552.3 UniProtKB/Swiss-Prot
  ENSMUST00000165114.2 UniProtKB/Swiss-Prot
  ENSMUST00000218835.2 UniProtKB/TrEMBL
  ENSMUST00000219642.2 UniProtKB/TrEMBL
Gene3D-CATH Zinc finger, CCCH-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Tis11B_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZFP36-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12192 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107946 ENTREZGENE
NCBI Gene 12192 ENTREZGENE
PANTHER MRNA DECAY ACTIVATOR PROTEIN ZFP36L1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12547 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tis11B_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfp36l1 PhenoGen
PROSITE ZF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P6I1_MOUSE UniProtKB/TrEMBL
  A0A1W2P7G3_MOUSE UniProtKB/TrEMBL
  P23950 ENTREZGENE
  Q543H2 ENTREZGENE, UniProtKB/TrEMBL
  Q91YI7 ENTREZGENE, UniProtKB/TrEMBL
  TISB_MOUSE UniProtKB/Swiss-Prot