Nucb2 (nucleobindin 2) - Rat Genome Database

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Gene: Nucb2 (nucleobindin 2) Mus musculus
Analyze
Symbol: Nucb2
Name: nucleobindin 2
RGD ID: 734221
MGI Page MGI
Description: Enables calcium ion binding activity. Predicted to be involved in several processes, including negative regulation of appetite; negative regulation of cell communication; and positive regulation of testosterone secretion. Predicted to act upstream of or within intracellular calcium ion homeostasis. Located in endoplasmic reticulum and nuclear outer membrane. Is expressed in several structures, including extraembryonic component; female reproductive system; and heart. Orthologous to human NUCB2 (nucleobindin 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI607786; Cal; Calnuc; DNA-binding protein NEFA; NE; Nefa; nesfa; Nesfatin-1; nucleobindin-2; prepronefastin; prepronesfatin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397116,103,579 - 116,139,823 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7116,103,604 - 116,139,819 (+)EnsemblGRCm39 Ensembl
GRCm387116,504,352 - 116,540,588 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7116,504,369 - 116,540,584 (+)EnsemblGRCm38mm10GRCm38
MGSCv377123,647,888 - 123,684,102 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367116,295,518 - 116,331,703 (+)NCBIMGSCv36mm8
Celera7116,437,745 - 116,475,120 (+)NCBICelera
Cytogenetic Map7F1NCBI
cM Map761.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-2-deoxy-D-glucopyranose  (EXP)
3-chloropropane-1,2-diol  (ISO)
4-hydroxyphenyl retinamide  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin M1  (ISO)
aldehydo-D-glucosamine  (EXP)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
Benoxacor  (EXP)
benzo[a]pyrene  (EXP,ISO)
Benzo[ghi]perylene  (EXP)
beta-D-glucosamine  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
buspirone  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
captan  (EXP)
chlordecone  (EXP)
choline  (EXP)
chromium atom  (ISO)
ciguatoxin CTX1B  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (EXP)
dexamethasone  (ISO)
Di-n-octyl phthalate  (EXP)
diarsenic trioxide  (ISO)
dichloroacetic acid  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
diquat  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
fipronil  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
folpet  (EXP)
FR900359  (ISO)
glafenine  (ISO)
glucose  (EXP)
isoprenaline  (EXP)
ivermectin  (ISO)
KT 5720  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (EXP)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nickel dichloride  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP)
pioglitazone  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (ISO)
quercetin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
ursodeoxycholic acid  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
zearalenone  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Nucleobindin-2/nesfatin in the endocrine pancreas: distribution and relationship to glycaemic state. Foo KS, etal., J Endocrinol. 2010 Mar;204(3):255-63. doi: 10.1677/JOE-09-0254. Epub 2009 Dec 23.
2. A research on the expression of Nucb2/ cAMP / PKA in the hippocampus of alcohol-dependent rats. Li Q, etal., Biochem Biophys Res Commun. 2023 May 28;658:148-152. doi: 10.1016/j.bbrc.2023.02.084. Epub 2023 Mar 9.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Enhanced expression of nesfatin/nucleobindin-2 in white adipose tissue of ventromedial hypothalamus-lesioned rats. Osaki A, etal., Neurosci Lett. 2012 Jul 11;521(1):46-51. doi: 10.1016/j.neulet.2012.05.056. Epub 2012 May 26.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Nesfatin-1 stimulates glucagon and insulin secretion and beta cell NUCB2 is reduced in human type 2 diabetic subjects. Riva M, etal., Cell Tissue Res. 2011 Dec;346(3):393-405. doi: 10.1007/s00441-011-1268-5. Epub 2011 Nov 23.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10915798   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11749975   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:17348862   PMID:18477467   PMID:19248766   PMID:19461159   PMID:19995555   PMID:20043894   PMID:20380005   PMID:20427481   PMID:20933030  
PMID:21224288   PMID:21325742   PMID:21555116   PMID:21677750   PMID:21873635   PMID:22334726   PMID:22486620   PMID:22508056   PMID:22514047   PMID:23106615   PMID:23613885   PMID:23967220  
PMID:24391760   PMID:24464950   PMID:25451467   PMID:25506938   PMID:25534851   PMID:25864637   PMID:25930999   PMID:25937598   PMID:26357899   PMID:26363221   PMID:26920055   PMID:27105386  
PMID:27209204   PMID:27824141   PMID:28087413   PMID:28339602   PMID:28374855   PMID:28697955   PMID:28855042   PMID:29705701   PMID:30067966   PMID:30503692   PMID:30550785   PMID:30981497  
PMID:31228099   PMID:31898375   PMID:32325033   PMID:32432771   PMID:33783610   PMID:34302909   PMID:35364055   PMID:35406022   PMID:36008865   PMID:36271663   PMID:36678225   PMID:37224650  
PMID:37269882   PMID:37481139  


Genomics

Comparative Map Data
Nucb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397116,103,579 - 116,139,823 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7116,103,604 - 116,139,819 (+)EnsemblGRCm39 Ensembl
GRCm387116,504,352 - 116,540,588 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7116,504,369 - 116,540,584 (+)EnsemblGRCm38mm10GRCm38
MGSCv377123,647,888 - 123,684,102 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367116,295,518 - 116,331,703 (+)NCBIMGSCv36mm8
Celera7116,437,745 - 116,475,120 (+)NCBICelera
Cytogenetic Map7F1NCBI
cM Map761.79NCBI
NUCB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381117,276,739 - 17,349,980 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1117,208,153 - 17,349,980 (+)EnsemblGRCh38hg38GRCh38
GRCh371117,298,286 - 17,353,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,254,862 - 17,309,646 (+)NCBINCBI36Build 36hg18NCBI36
Build 341117,254,887 - 17,309,646NCBI
Celera1117,428,095 - 17,482,908 (+)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1116,982,188 - 17,036,934 (+)NCBIHuRef
CHM1_11117,297,833 - 17,352,630 (+)NCBICHM1_1
T2T-CHM13v2.01117,374,367 - 17,447,613 (+)NCBIT2T-CHM13v2.0
Nucb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81180,185,121 - 180,221,644 (+)NCBIGRCr8
mRatBN7.21170,750,830 - 170,787,356 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1170,750,877 - 170,787,353 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1179,067,066 - 179,103,567 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01186,253,570 - 186,290,073 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01178,968,763 - 179,005,140 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01185,106,773 - 185,143,278 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1185,104,656 - 185,143,272 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01192,078,545 - 192,115,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41174,605,677 - 174,642,111 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11174,744,922 - 174,781,355 (+)NCBI
Celera1168,570,763 - 168,607,089 (+)NCBICelera
Cytogenetic Map1q35NCBI
Nucb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541432,062,835 - 32,105,975 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541432,062,870 - 32,104,117 (+)NCBIChiLan1.0ChiLan1.0
NUCB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2919,594,993 - 19,665,472 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11119,555,745 - 19,625,901 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01117,331,742 - 17,404,682 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11117,002,296 - 17,072,447 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1117,036,038 - 17,072,447 (+)Ensemblpanpan1.1panPan2
NUCB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12139,868,756 - 39,918,724 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2139,874,781 - 39,918,689 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2139,368,984 - 39,424,531 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02140,974,304 - 41,029,984 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2140,998,084 - 41,033,034 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12139,987,014 - 40,041,813 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02140,193,641 - 40,249,282 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02140,532,928 - 40,588,133 (+)NCBIUU_Cfam_GSD_1.0
Nucb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494745,684,001 - 45,729,516 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365281,717,049 - 1,763,536 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365281,726,879 - 1,763,483 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUCB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1241,782,594 - 41,829,829 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2244,840,114 - 44,888,611 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUCB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1147,634,425 - 47,690,723 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl147,634,531 - 47,689,011 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038145,065,338 - 145,121,572 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nucb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247668,924,953 - 8,943,838 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247668,907,475 - 8,943,838 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nucb2
1225 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:296
Count of miRNA genes:266
Interacting mature miRNAs:278
Transcripts:ENSMUST00000032895, ENSMUST00000182767, ENSMUST00000183175, ENSMUST00000183335
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse

Markers in Region
AI607786  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Whitehead/MRC_RH71194.03UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000032895   ⟹   ENSMUSP00000032895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7116,103,604 - 116,139,819 (+)Ensembl
GRCm38.p6 Ensembl7116,504,369 - 116,540,584 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7116,103,619 - 116,108,836 (+)Ensembl
GRCm38.p6 Ensembl7116,504,384 - 116,509,601 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183175   ⟹   ENSMUSP00000138741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7116,103,650 - 116,139,678 (+)Ensembl
GRCm38.p6 Ensembl7116,504,415 - 116,540,443 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183335   ⟹   ENSMUSP00000138757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7116,128,047 - 116,135,268 (+)Ensembl
GRCm38.p6 Ensembl7116,528,812 - 116,536,033 (+)Ensembl
RefSeq Acc Id: NM_001130479   ⟹   NP_001123951
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397116,103,604 - 116,139,823 (+)NCBI
GRCm387116,504,369 - 116,540,588 (+)NCBI
MGSCv377123,647,888 - 123,684,102 (+)RGD
Celera7116,437,740 - 116,475,120 (+)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001360375   ⟹   NP_001347304
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397116,103,604 - 116,139,823 (+)NCBI
GRCm387116,504,369 - 116,540,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508025   ⟹   XP_006508088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397116,103,595 - 116,139,823 (+)NCBI
GRCm387116,504,354 - 116,540,588 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934144
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397116,103,579 - 116,139,823 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001123951   ⟸   NM_001130479
- Peptide Label: precursor
- UniProtKB: P81117 (UniProtKB/Swiss-Prot),   Q3UKN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508088   ⟸   XM_006508025
- Peptide Label: isoform X1
- UniProtKB: P81117 (UniProtKB/Swiss-Prot),   Q3UKN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347304   ⟸   NM_001360375
- Peptide Label: precursor
- UniProtKB: P81117 (UniProtKB/Swiss-Prot),   Q3UKN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000032895   ⟸   ENSMUST00000032895
RefSeq Acc Id: ENSMUSP00000138741   ⟸   ENSMUST00000183175
RefSeq Acc Id: ENSMUSP00000138757   ⟸   ENSMUST00000183335
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P81117-F1-model_v2 AlphaFold P81117 1-420 view protein structure

Promoters
RGD ID:8665327
Promoter ID:EPDNEW_M10695
Type:initiation region
Name:Nucb2_1
Description:Mus musculus nucleobindin 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10696  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387116,504,384 - 116,504,444EPDNEW
RGD ID:8665329
Promoter ID:EPDNEW_M10696
Type:single initiation site
Name:Nucb2_2
Description:Mus musculus nucleobindin 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10695  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387116,520,041 - 116,520,101EPDNEW
RGD ID:6841662
Promoter ID:MM_KWN:52414
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000032895,   NM_016773
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367123,647,549 - 123,648,049 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858179 AgrOrtholog
Ensembl Genes ENSMUSG00000030659 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032895 ENTREZGENE
  ENSMUST00000032895.15 UniProtKB/Swiss-Prot
  ENSMUST00000183175.8 UniProtKB/TrEMBL
  ENSMUST00000183335.2 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleobindin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1858179 ENTREZGENE
NCBI Gene 53322 ENTREZGENE
PANTHER PTHR19237 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19237:SF22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nucb2 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt NUCB2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TV28_MOUSE UniProtKB/TrEMBL
  Q3UKN6 ENTREZGENE, UniProtKB/TrEMBL
  S4R2R9_MOUSE UniProtKB/TrEMBL