Dctn4 (dynactin 4) - Rat Genome Database

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Gene: Dctn4 (dynactin 4) Mus musculus
Analyze
Symbol: Dctn4
Name: dynactin 4
RGD ID: 733942
MGI Page MGI
Description: Predicted to be located in centrosome; kinetochore; and spindle pole. Predicted to be part of cytoplasmic dynein complex and dynactin complex. Predicted to colocalize with focal adhesion and stress fiber. Is expressed in cerebral cortex. Orthologous to human DCTN4 (dynactin subunit 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110001K06Rik; 4930547K17Rik; C130039E17Rik; dynactin subunit 4; dynactin subunit p62; p6; p62
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391860,659,226 - 60,691,838 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1860,659,257 - 60,691,838 (+)EnsemblGRCm39 Ensembl
GRCm381860,526,154 - 60,558,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1860,526,185 - 60,558,766 (+)EnsemblGRCm38mm10GRCm38
MGSCv371860,685,875 - 60,718,416 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361860,651,590 - 60,684,131 (+)NCBIMGSCv36mm8
Celera1861,811,724 - 61,843,194 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1834.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Dynactin. Schroer TA, Annu Rev Cell Dev Biol. 2004;20:759-79.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21186323  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22028030   PMID:26496610   PMID:30068389   PMID:30409884   PMID:32325033   PMID:32554809   PMID:33473114  


Genomics

Comparative Map Data
Dctn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391860,659,226 - 60,691,838 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1860,659,257 - 60,691,838 (+)EnsemblGRCm39 Ensembl
GRCm381860,526,154 - 60,558,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1860,526,185 - 60,558,766 (+)EnsemblGRCm38mm10GRCm38
MGSCv371860,685,875 - 60,718,416 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361860,651,590 - 60,684,131 (+)NCBIMGSCv36mm8
Celera1861,811,724 - 61,843,194 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1834.36NCBI
DCTN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385150,708,440 - 150,759,017 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5150,708,440 - 150,759,095 (-)EnsemblGRCh38hg38GRCh38
GRCh375150,088,002 - 150,138,579 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365150,068,502 - 150,118,769 (-)NCBINCBI36Build 36hg18NCBI36
Build 345150,068,502 - 150,118,769NCBI
Celera5146,169,659 - 146,220,011 (-)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5145,234,095 - 145,284,314 (-)NCBIHuRef
CHM1_15149,521,113 - 149,571,477 (-)NCBICHM1_1
T2T-CHM13v2.05151,244,948 - 151,295,528 (-)NCBIT2T-CHM13v2.0
Dctn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81856,251,187 - 56,279,844 (+)NCBIGRCr8
mRatBN7.21853,982,355 - 54,009,409 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1853,982,358 - 54,009,399 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1856,070,601 - 56,095,730 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01856,785,203 - 56,810,332 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01854,606,356 - 54,630,946 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01855,797,188 - 55,824,195 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1855,797,198 - 55,822,036 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,030,617 - 55,057,675 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,478,185 - 56,502,775 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11856,550,362 - 56,576,103 (+)NCBI
Celera1852,136,101 - 52,160,691 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Dctn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554153,850,086 - 3,886,953 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554153,850,475 - 3,886,953 (+)NCBIChiLan1.0ChiLan1.0
DCTN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24145,938,960 - 145,992,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15144,078,506 - 144,128,568 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05146,134,587 - 146,184,639 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15152,138,052 - 152,187,140 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5152,138,052 - 152,187,140 (-)Ensemblpanpan1.1panPan2
DCTN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,423,591 - 58,453,055 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,423,635 - 58,450,874 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,188,803 - 58,218,047 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0458,903,399 - 58,932,644 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl458,903,411 - 58,932,644 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,691,730 - 58,720,975 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0458,806,123 - 58,835,620 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,337,230 - 59,366,747 (+)NCBIUU_Cfam_GSD_1.0
Dctn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213142,678,462 - 142,711,176 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365044,252,431 - 4,285,151 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365044,252,442 - 4,285,151 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCTN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,681,003 - 151,783,746 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,681,001 - 151,713,923 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DCTN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,321,724 - 53,364,507 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603424,355,939 - 24,401,037 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dctn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247749,951,228 - 9,986,164 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247749,951,520 - 9,986,194 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dctn4
1022 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:712
Count of miRNA genes:449
Interacting mature miRNAs:539
Transcripts:ENSMUST00000025505
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
27226720Tibw5_mtibia width 5, proximal, 10 week (mouse)185043306762633071Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
4141431Msmr2_mMSM lymphoma resistance 2 (mouse)Not determined5497587361238870Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185679463066952485Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185802139969349142Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186013307280043215Mouse

Markers in Region
RH135192  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381860,558,500 - 60,558,694UniSTSGRCm38
MGSCv371860,718,154 - 60,718,348UniSTSGRCm37
Celera1861,842,932 - 61,843,126UniSTS
Cytogenetic Map18D2UniSTS
UniSTS:224845  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381860,558,499 - 60,558,692UniSTSGRCm38
MGSCv371860,718,153 - 60,718,346UniSTSGRCm37
Celera1861,842,931 - 61,843,124UniSTS
Cytogenetic Map18D2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC135638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB856653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ308131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000025505   ⟹   ENSMUSP00000025505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1860,659,273 - 60,691,838 (+)Ensembl
GRCm38.p6 Ensembl1860,526,201 - 60,558,766 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223590   ⟹   ENSMUSP00000153421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1860,659,286 - 60,661,050 (+)Ensembl
GRCm38.p6 Ensembl1860,526,214 - 60,527,978 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1860,659,290 - 60,684,134 (+)Ensembl
GRCm38.p6 Ensembl1860,526,218 - 60,551,062 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223984   ⟹   ENSMUSP00000153008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1860,659,257 - 60,691,011 (+)Ensembl
GRCm38.p6 Ensembl1860,526,185 - 60,557,939 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1860,671,710 - 60,676,040 (+)Ensembl
GRCm38.p6 Ensembl1860,538,638 - 60,542,968 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224671
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1860,688,224 - 60,688,530 (+)Ensembl
GRCm38.p6 Ensembl1860,555,152 - 60,555,458 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1860,678,337 - 60,679,859 (+)Ensembl
GRCm38.p6 Ensembl1860,545,265 - 60,546,787 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1860,671,502 - 60,677,850 (+)Ensembl
GRCm38.p6 Ensembl1860,538,430 - 60,544,778 (+)Ensembl
RefSeq Acc Id: NM_001357462   ⟹   NP_001344391
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,659,226 - 60,691,838 (+)NCBI
GRCm381860,526,154 - 60,558,766 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026302   ⟹   NP_080578
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,659,226 - 60,691,838 (+)NCBI
GRCm381860,526,154 - 60,558,766 (+)NCBI
MGSCv371860,685,875 - 60,718,416 (+)RGD
Celera1861,811,724 - 61,843,194 (+)RGD
cM Map18 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080578   ⟸   NM_026302
- Peptide Label: isoform 1
- UniProtKB: Q3TQY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344391   ⟸   NM_001357462
- Peptide Label: isoform 2
- UniProtKB: Q923A0 (UniProtKB/Swiss-Prot),   Q8CBY8 (UniProtKB/Swiss-Prot),   Q9D4X0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000153008   ⟸   ENSMUST00000223984
RefSeq Acc Id: ENSMUSP00000153421   ⟸   ENSMUST00000223590
RefSeq Acc Id: ENSMUSP00000025505   ⟸   ENSMUST00000025505

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CBY8-F1-model_v2 AlphaFold Q8CBY8 1-467 view protein structure

Promoters
RGD ID:13677894
Promoter ID:EPDNEW_M23096
Type:multiple initiation site
Name:Dctn4_1
Description:Mus musculus dynactin 4 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381860,526,218 - 60,526,278EPDNEW
RGD ID:6829176
Promoter ID:MM_KWN:25387
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_026302,   UC008FAH.1,   UC008FAI.1,   UC008FAK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361860,685,276 - 60,686,342 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914915 AgrOrtholog
Ensembl Genes ENSMUSG00000024603 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025505 ENTREZGENE
  ENSMUST00000025505.7 UniProtKB/Swiss-Prot
  ENSMUST00000223590.2 UniProtKB/TrEMBL
  ENSMUST00000223984 ENTREZGENE
  ENSMUST00000223984.2 UniProtKB/Swiss-Prot
InterPro DCTN4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67665 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914915 ENTREZGENE
NCBI Gene 67665 ENTREZGENE
PANTHER DYNACTIN SUBUNIT 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13034 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Dynactin_p62 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dctn4 PhenoGen
UniProt DCTN4_MOUSE UniProtKB/Swiss-Prot
  Q3TQY2 ENTREZGENE, UniProtKB/TrEMBL
  Q3TRR2_MOUSE UniProtKB/TrEMBL
  Q8CBY8 ENTREZGENE
  Q923A0 ENTREZGENE
  Q9CRP9_MOUSE UniProtKB/TrEMBL
  Q9D4X0 ENTREZGENE
UniProt Secondary Q923A0 UniProtKB/Swiss-Prot
  Q9D4X0 UniProtKB/Swiss-Prot