Dctn4 (dynactin subunit 4) - Rat Genome Database

Name: Dctn4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Dctn4 (dynactin subunit 4) Ictidomys tridecemlineatus

Analyze

Symbol:

Dctn4

Name:

dynactin subunit 4

RGD ID:

12642549

Description:

PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH cystic fibrosis (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic dynein complex (ortholog); focal adhesion (ortholog); kinetochore (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

dynactin subunit 4, transcript variant X1; dynactin subunit 4, transcript variant X2; dynactin subunit 4, transcript variant X3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DCTN4 (dynactin subunit 4)	NCBI	Ortholog
Mus musculus (house mouse):	Dctn4 (dynactin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Dctn4 (dynactin subunit 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dctn4 (dynactin subunit 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DCTN4 (dynactin subunit 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DCTN4 (dynactin subunit 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DCTN4 (dynactin subunit 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DCTN4 (dynactin subunit 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dctn4 (dynactin subunit 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	142,678,462 - 142,711,176 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	4,252,431 - 4,285,151 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	4,252,442 - 4,285,151 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cystic fibrosis (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

Pseudomonas Infections (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cell cortex (IEA)

centrosome (IEA)

cytoplasm (IEA)

cytoplasmic dynein complex (ISO)

cytoskeleton (IEA)

dynactin complex (IEA)

focal adhesion (ISO)

kinetochore (ISO)

sarcomere (IEA)

spindle pole (ISO)

stress fiber (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mitochondria transport pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Dctn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	142,678,462 - 142,711,176 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	4,252,431 - 4,285,151 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	4,252,442 - 4,285,151 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DCTN4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	150,708,440 - 150,759,017 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	150,708,440 - 150,759,095 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	150,088,002 - 150,138,579 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	150,068,502 - 150,118,769 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	150,068,502 - 150,118,769	NCBI
Celera	5	146,169,659 - 146,220,011 (-)	NCBI		Celera
Cytogenetic Map	5	q33.1	NCBI
HuRef	5	145,234,095 - 145,284,314 (-)	NCBI		HuRef
CHM1_1	5	149,521,113 - 149,571,477 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	151,244,948 - 151,295,528 (-)	NCBI		T2T-CHM13v2.0

Dctn4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	60,659,226 - 60,691,838 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	60,659,257 - 60,691,838 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	60,526,154 - 60,558,766 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	60,526,185 - 60,558,766 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	60,685,875 - 60,718,416 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	60,651,590 - 60,684,131 (+)	NCBI		MGSCv36	mm8
Celera	18	61,811,724 - 61,843,194 (+)	NCBI		Celera
Cytogenetic Map	18	D3	NCBI
cM Map	18	34.36	NCBI

Dctn4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	56,251,187 - 56,279,844 (+)	NCBI		GRCr8
mRatBN7.2	18	53,982,355 - 54,009,409 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	53,982,358 - 54,009,399 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	56,070,601 - 56,095,730 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	56,785,203 - 56,810,332 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	54,606,356 - 54,630,946 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	55,797,188 - 55,824,195 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	55,797,198 - 55,822,036 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	55,030,617 - 55,057,675 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	56,478,185 - 56,502,775 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	56,550,362 - 56,576,103 (+)	NCBI
Celera	18	52,136,101 - 52,160,691 (+)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI

Dctn4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	3,850,086 - 3,886,953 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	3,850,475 - 3,886,953 (+)	NCBI	ChiLan1.0	ChiLan1.0

DCTN4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	145,938,960 - 145,992,459 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	144,078,506 - 144,128,568 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	146,134,587 - 146,184,639 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	152,138,052 - 152,187,140 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	152,138,052 - 152,187,140 (-)	Ensembl	panpan1.1		panPan2

DCTN4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	58,423,591 - 58,453,055 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	58,423,635 - 58,450,874 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	58,188,803 - 58,218,047 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	58,903,399 - 58,932,644 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	58,903,411 - 58,932,644 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	58,691,730 - 58,720,975 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	58,806,123 - 58,835,620 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	59,337,230 - 59,366,747 (+)	NCBI		UU_Cfam_GSD_1.0

DCTN4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	151,681,003 - 151,783,746 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	151,681,001 - 151,713,923 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

DCTN4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	53,321,724 - 53,364,507 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666034	24,355,939 - 24,401,037 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dctn4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	9,951,228 - 9,986,164 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624774	9,951,520 - 9,986,194 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005324152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005324153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013358157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000013453 ⟹ ENSSTOP00000012055

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936504	4,252,442 - 4,285,151 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000031490 ⟹ ENSSTOP00000025718

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936504	4,252,431 - 4,285,151 (+)	Ensembl

RefSeq Acc Id:

XM_005324152 ⟹ XP_005324209

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	142,678,462 - 142,711,176 (+)	NCBI
SpeTri2.0	NW_004936504	4,252,442 - 4,285,151 (+)	NCBI

Sequence:

show sequence

GTCACGTGAGGCGGTGGGAGGGCCGTTGGCTCCTCCCTCTCCAAGATGGCGTCCTTGCTGCAGT
CGGAGCGGGTTCTCTATCTAGTCCAAGGAGAAAAGAAGGTTCGGGCTCCGCTTTCGCAGCTCTA
CTTCTGCCGCTATTGTAGCGAGCTGCGGTCGCTGGAATGTGTGTCTCACGAGGTGGACTCCCAT
TATTGTCCCAGTTGCTTAGAAAATATGCCATCAGCTGAAGCCAAACTAAAAAAAAATAGATGTG
CCAACTGCTTTGACTGTCCTGGCTGCATGCACACACTATCCACCCGGGCAACAAGCATCTCCAC
GCAGCTCCCAGATGACCCAGCCAAAACTACCATGAAGAAAGCCTATTACTTGGCCTGTGGATTT
TGTCGCTGGACATCTAGAGATGTGGGCATGGCAGACAAATCTGTAGCTAGTGGTGGTTGGCAGG
AACCAGAAAATCCTCACACACAACGGATGAACAAATTGATTGAATATTACCAGCAGCTTGCTCA
GAAAGAGAAGGTTGAGCGAGATCGCAAGAAATTGGCACGACGTAGAAACTATATGCCTCTGGCT
TTTTCGCAACATACTATTCATGTAGTGGACAAATATGGTCTTGGAACCAGGCTTCAGCGACCCC
GAGCTGGCGCATCCATCAGTACTCTTGCTGGACTTTCCCTTAAAGAAGGAGAGGACCAGAAAGA
GATAAAGATTGAGCCAGCTCAAGCTGTGGATGAAGTGGAACCTTTACCTGAAGACTATTACACA
AGACCAGTAAATTTAACAGAGGTGACTACCCTTCAGCAGCGCCTCTTACAGCCTGACTTCCAAC
CAATTTGTGCTTCACAACTCTATCCTCGTCACAAACATCTTCTGATCAAACGGTCCCTGCGCTG
CCGAAAATGTGAACATAATTTGAGCAAGCCGGAATTTAATCCAACATCTATCAAATTCAAAATC
CAACTGGTTGCTGTCAATTATATTCCAGAAGTGAGAATCATGTCAATTCCCAACCTTCGCTACA
TGAAGGAGAGCCAGGTCCTTCTGACTCTTACGAATCCTGTGGAAAACCTTACCCATGTGACTCT
GTTTGAGTGTGAGGAGGGGGATCCTGATGATATCAATAGCACTGCTAAGGTGGTGGTGCCTCCC
AAAGAGCTCATTTTAGCTGGCAAGGATGCAGCAGCAGAATATGATGAGTTGGCAGAACCCCAGG
ATTTTCAGGATGATCCTGACATTATAGCCTTCAGAAAGGCCAACAAAGTGGGCATTTTCATCAA
AGTTACCCCTCAGCGCGAGGAGGGTGAAGTGACCGTGTCCTTCAAGATGAAGCATGATTTTAAA
AATCTGGCAGCCCCAATCCGCCCCATTGAAGAAAGTGACCAGAGCACAGAAGTCATCTGGCTCA
CCCAGCATGTGGAACTCAGCTTGGGCCCGCTTCTTCCTTAAAAGGTTACTTTGGTGGGCAGATT
CCACCTGAGACAATGTCACCACAGACCTGTGTTAAAACATGGAAGCTCCTGCTTCATTAGGCTT
TGTTTATCATGATGTACCCATGCACTACTCGGTCCTCTTCCTAAGAGTGGGAGCACAAGCCAGG
CATCGGGAACACAGGGTAACTGCTGTTCCTCTTGCTGTCACCTCTATTGACACCAATCAATCTG
TGTTTCCCTCACTGAGCCCTGCACGTTGAATAACAGCAACATAGCTCCATCCCAGTAAAGGGGA
TGGCTGTTCCTCAGAATGGTGTTATATTTGCCACCTGAGAAACTGACTATACTATCTCTTGATC
TGATCTCACAAAGGATCATAATCCGACAGTTGAAACTTAACAGTGATATCCCAAAGGTGGACCT
GCTATTAATGATCCAGCATTGGTCTCAATGTACCAGCTGCTTTCTGCATTCCAGTGTAAATCAT
CTAGCCATCTAAAACTTACCCCTTTATTTGCCAACATGGCTCTCATTTTGTCATAGATTTCTGT
TTGGCAAAAAAAAAAAAAAAATAGAATTGACATATTACCTTTAGTTTTGTGATGTTTGGAAAAA
CCTGTGAAATAAGGCACTCTCATTTACCCTCTTTCTAGATGAATATAGGACACTAATTTATCAG
TTGCTTTTAATTTTTTCCCAGAACAATATGAAGCTTTTCCTTTTAAGAATGTGAAAGAAGCAAG
GAATTACATGTCATATCAAGAGGGTAGCAAATTCCATTTGTTTTAAGTTTTGCCCCAAAACCTA
GGAATGAATGCTGCCACAGGAGACAGTCTTTCTTCTTACTGCTCATCCTCTCTTTTCTTCTCTG
CCTTTTTAATTCAATAAATTGTTCTGAGTATTTGGGATTTGAAAAACTCCGCAGGAAACCTGAG
TGGACAAGTTCACTTTGAGACTGTAAAAAACATTTTAAAGGTTAGATTTTTAGTATGACCTGAA
ATAAAGTACTTTCCACTGATTTGAAGAAGAAATGAACTATTACAATGTCTTGAATCCAAAATTG
GATATTAAGATGAGGGGGGCAAAAAACACCCCTCACTGAGTCTAAGCCTTTTGTCATATGGTGT
ATCAAATAAGACCATTTTGATTGTAAACCATAACATAATTCAGCAAGTAGCCCAGAGTGCTGGC
CTAACAGCAGAGATGCTGTTTTCACCTGGGTCCTAGCTGGGTTGCTAACCTTAATTTCTGTGAT
GTTTTCTCAAATGAGACTTAATACAATAAGTAGACCACCAGCTGCACCACATTTTCTCAAAAGT
ATTCTTGGTGTGTGGTCAACAGACTTTTGAGGAAAGAAAAATTTCCTACTTACTTTTGTTTTTA
ATTCTCAGTCTTAAAAAAAATAATAAGATATATAATCTAGAATAGAGATACAAAATACTTGTCA
GCTCTCCTTGAAAGACAAAGCTATTTGGGAAACTTTTGAAGGACACTAAATTGCACCCTTAAGG
TCAATTTTATGAAGCAATATTCTCACAGCCCAATATATTGTGCTGCAACATAAGGGAAAAAATA
CTCATCTCTAATATTGTGATAATAACTAAAGTTTAGCCTCTAGGGAATTGGGGCAGGGAGATGG
GTATTATAAGTTTGCAGACTATAAAAAGAGCTTAATTTTTCGTGATCCCATAGAATGTCAAATT
AATTTTTATTTCCCCACGTACTAGAGTCTGTTGTGAAACCACTGCTTCATATTTGCCAGTGAAG
GAAATGGGCAACAAAGGAGAGAGTAGCTTCATATGTTTACACATTTGCATAGGCTGCTTGCAGT
TTTATGTCATGCCTTTATGGCTTGTAGCTGGTATTTGTTCCCAAAAGTAATAATGTTGCAGTAA
TAGGTCTCCTCACTCCAGTATGATACTGAAACATAAAAACATTTTTGATCATAGAATTTTTTTC
TTCAGAAGCCAAATTAACACAGAATAACAAGAGCCACTGGAGTAATGTTTCCTTGAGATGGGTT
TTAGTGCAAGTTGATAATTCTGTGTGTTCATAGAGATGATTCAACACCTGCAGCTGGTGAGTTA
GGAATTTCATCTGTTGCCTTTCTTACATTAGATCAGGTGCAAGATTTTTAATGCTAGTGTGCAC
CACCACAGGAGAGTTAGACCTTGTCTGCACTGGAAACTAAAATTTTGGAAATATAAGGCTAAGT
TAGTTTGGATTTGTGATTTGATTCACTCACCAAAGTTTTATTTGTTTCAAAGTACATGTTATAG
GCATAATGAGCTAAGTGTCATGCATATTGTGAAGAAGCTTCCTTTTTGGGCCCTTTTGAGAATG
AGAGGCACTCTTTGGTCTTCATGAAAGGTTACTGTTTTGCCTTATTGCTTAATGTAGTGAAATA
AAGCAGACAAAGCTTGAGTGTA

hide sequence

RefSeq Acc Id:

XM_005324153 ⟹ XP_005324210

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	142,678,463 - 142,711,176 (+)	NCBI
SpeTri2.0	NW_004936504	4,252,442 - 4,285,151 (+)	NCBI

Sequence:

show sequence

GTCACGTGAGGCGGTGGGAGGGCCGTTGGCTCCTCCCTCTCCAAGATGGCGTCCTTGCTGCAGT
CGGAGCGGGTTCTCTATCTAGTCCAAGGAGAAAAGAAGGTTCGGGCTCCGCTTTCGCAGCTCTA
CTTCTGCCGCTATTGTAGCGAGCTGCGGTCGCTGGAATGTGTGTCTCACGAGGTGGACTCCCAT
TATTGTCCCAGTTGCTTAGAAAATATGCCATCAGCTGAAGCCAAACTAAAAAAAAATAGATGTG
CCAACTGCTTTGACTGTCCTGGCTGCATGCACACACTATCCACCCGGGCAACAAGCATCTCCAC
GCAGCTCCCAGATGACCCAGCCAAAACTACCATGAAGAAAGCCTATTACTTGGCCTGTGGATTT
TGTCGCTGGACATCTAGAGATGTGGGCATGGCAGACAAATCTGTAGCTAGTGGTGGTTGGCAGG
AACCAGAAAATCCTCACACACAACGGATGAACAAATTGATTGAATATTACCAGCAGCTTGCTCA
GAAAGAGAAGGTTGAGCGAGATCGCAAGAAATTGGCACGACGTAGAAACTATATGCCTCTGGCT
TTTTCGGACAAATATGGTCTTGGAACCAGGCTTCAGCGACCCCGAGCTGGCGCATCCATCAGTA
CTCTTGCTGGACTTTCCCTTAAAGAAGGAGAGGACCAGAAAGAGATAAAGATTGAGCCAGCTCA
AGCTGTGGATGAAGTGGAACCTTTACCTGAAGACTATTACACAAGACCAGTAAATTTAACAGAG
GTGACTACCCTTCAGCAGCGCCTCTTACAGCCTGACTTCCAACCAATTTGTGCTTCACAACTCT
ATCCTCGTCACAAACATCTTCTGATCAAACGGTCCCTGCGCTGCCGAAAATGTGAACATAATTT
GAGCAAGCCGGAATTTAATCCAACATCTATCAAATTCAAAATCCAACTGGTTGCTGTCAATTAT
ATTCCAGAAGTGAGAATCATGTCAATTCCCAACCTTCGCTACATGAAGGAGAGCCAGGTCCTTC
TGACTCTTACGAATCCTGTGGAAAACCTTACCCATGTGACTCTGTTTGAGTGTGAGGAGGGGGA
TCCTGATGATATCAATAGCACTGCTAAGGTGGTGGTGCCTCCCAAAGAGCTCATTTTAGCTGGC
AAGGATGCAGCAGCAGAATATGATGAGTTGGCAGAACCCCAGGATTTTCAGGATGATCCTGACA
TTATAGCCTTCAGAAAGGCCAACAAAGTGGGCATTTTCATCAAAGTTACCCCTCAGCGCGAGGA
GGGTGAAGTGACCGTGTCCTTCAAGATGAAGCATGATTTTAAAAATCTGGCAGCCCCAATCCGC
CCCATTGAAGAAAGTGACCAGAGCACAGAAGTCATCTGGCTCACCCAGCATGTGGAACTCAGCT
TGGGCCCGCTTCTTCCTTAAAAGGTTACTTTGGTGGGCAGATTCCACCTGAGACAATGTCACCA
CAGACCTGTGTTAAAACATGGAAGCTCCTGCTTCATTAGGCTTTGTTTATCATGATGTACCCAT
GCACTACTCGGTCCTCTTCCTAAGAGTGGGAGCACAAGCCAGGCATCGGGAACACAGGGTAACT
GCTGTTCCTCTTGCTGTCACCTCTATTGACACCAATCAATCTGTGTTTCCCTCACTGAGCCCTG
CACGTTGAATAACAGCAACATAGCTCCATCCCAGTAAAGGGGATGGCTGTTCCTCAGAATGGTG
TTATATTTGCCACCTGAGAAACTGACTATACTATCTCTTGATCTGATCTCACAAAGGATCATAA
TCCGACAGTTGAAACTTAACAGTGATATCCCAAAGGTGGACCTGCTATTAATGATCCAGCATTG
GTCTCAATGTACCAGCTGCTTTCTGCATTCCAGTGTAAATCATCTAGCCATCTAAAACTTACCC
CTTTATTTGCCAACATGGCTCTCATTTTGTCATAGATTTCTGTTTGGCAAAAAAAAAAAAAAAA
TAGAATTGACATATTACCTTTAGTTTTGTGATGTTTGGAAAAACCTGTGAAATAAGGCACTCTC
ATTTACCCTCTTTCTAGATGAATATAGGACACTAATTTATCAGTTGCTTTTAATTTTTTCCCAG
AACAATATGAAGCTTTTCCTTTTAAGAATGTGAAAGAAGCAAGGAATTACATGTCATATCAAGA
GGGTAGCAAATTCCATTTGTTTTAAGTTTTGCCCCAAAACCTAGGAATGAATGCTGCCACAGGA
GACAGTCTTTCTTCTTACTGCTCATCCTCTCTTTTCTTCTCTGCCTTTTTAATTCAATAAATTG
TTCTGAGTATTTGGGATTTGAAAAACTCCGCAGGAAACCTGAGTGGACAAGTTCACTTTGAGAC
TGTAAAAAACATTTTAAAGGTTAGATTTTTAGTATGACCTGAAATAAAGTACTTTCCACTGATT
TGAAGAAGAAATGAACTATTACAATGTCTTGAATCCAAAATTGGATATTAAGATGAGGGGGGCA
AAAAACACCCCTCACTGAGTCTAAGCCTTTTGTCATATGGTGTATCAAATAAGACCATTTTGAT
TGTAAACCATAACATAATTCAGCAAGTAGCCCAGAGTGCTGGCCTAACAGCAGAGATGCTGTTT
TCACCTGGGTCCTAGCTGGGTTGCTAACCTTAATTTCTGTGATGTTTTCTCAAATGAGACTTAA
TACAATAAGTAGACCACCAGCTGCACCACATTTTCTCAAAAGTATTCTTGGTGTGTGGTCAACA
GACTTTTGAGGAAAGAAAAATTTCCTACTTACTTTTGTTTTTAATTCTCAGTCTTAAAAAAAAT
AATAAGATATATAATCTAGAATAGAGATACAAAATACTTGTCAGCTCTCCTTGAAAGACAAAGC
TATTTGGGAAACTTTTGAAGGACACTAAATTGCACCCTTAAGGTCAATTTTATGAAGCAATATT
CTCACAGCCCAATATATTGTGCTGCAACATAAGGGAAAAAATACTCATCTCTAATATTGTGATA
ATAACTAAAGTTTAGCCTCTAGGGAATTGGGGCAGGGAGATGGGTATTATAAGTTTGCAGACTA
TAAAAAGAGCTTAATTTTTCGTGATCCCATAGAATGTCAAATTAATTTTTATTTCCCCACGTAC
TAGAGTCTGTTGTGAAACCACTGCTTCATATTTGCCAGTGAAGGAAATGGGCAACAAAGGAGAG
AGTAGCTTCATATGTTTACACATTTGCATAGGCTGCTTGCAGTTTTATGTCATGCCTTTATGGC
TTGTAGCTGGTATTTGTTCCCAAAAGTAATAATGTTGCAGTAATAGGTCTCCTCACTCCAGTAT
GATACTGAAACATAAAAACATTTTTGATCATAGAATTTTTTTCTTCAGAAGCCAAATTAACACA
GAATAACAAGAGCCACTGGAGTAATGTTTCCTTGAGATGGGTTTTAGTGCAAGTTGATAATTCT
GTGTGTTCATAGAGATGATTCAACACCTGCAGCTGGTGAGTTAGGAATTTCATCTGTTGCCTTT
CTTACATTAGATCAGGTGCAAGATTTTTAATGCTAGTGTGCACCACCACAGGAGAGTTAGACCT
TGTCTGCACTGGAAACTAAAATTTTGGAAATATAAGGCTAAGTTAGTTTGGATTTGTGATTTGA
TTCACTCACCAAAGTTTTATTTGTTTCAAAGTACATGTTATAGGCATAATGAGCTAAGTGTCAT
GCATATTGTGAAGAAGCTTCCTTTTTGGGCCCTTTTGAGAATGAGAGGCACTCTTTGGTCTTCA
TGAAAGGTTACTGTTTTGCCTTATTGCTTAATGTAGTGAAATAAAGCAGACAAAGCTTGAGTGT
A

hide sequence

RefSeq Acc Id:

XM_013358157 ⟹ XP_013213611

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	142,678,509 - 142,711,176 (+)	NCBI
SpeTri2.0	NW_004936504	4,252,471 - 4,285,151 (+)	NCBI

Sequence:

show sequence

CTCCTCCCTCTCCAAGATGGCGTCCTTGCTGCAGTCGGAGCGGGTTCTCTATCTAGTCCAAGGA
GAAAAGAAGGTTCGGGCTCCGCTTTCGCAGCTCTACTTCTGCCGCTATTGTAGCGAGCTGCGGT
CGCTGGAATGTGTGTCTCACGAGATGTGCCAACTGCTTTGACTGTCCTGGCTGCATGCACACAC
TATCCACCCGGGCAACAAGCATCTCCACGCAGCTCCCAGATGACCCAGCCAAAACTACCATGAA
GAAAGCCTATTACTTGGCCTGTGGATTTTGTCGCTGGACATCTAGAGATGTGGGCATGGCAGAC
AAATCTGTAGCTAGTGGTGGTTGGCAGGAACCAGAAAATCCTCACACACAACGGATGAACAAAT
TGATTGAATATTACCAGCAGCTTGCTCAGAAAGAGAAGGTTGAGCGAGATCGCAAGAAATTGGC
ACGACGTAGAAACTATATGCCTCTGGCTTTTTCGCAACATACTATTCATGTAGTGGACAAATAT
GGTCTTGGAACCAGGCTTCAGCGACCCCGAGCTGGCGCATCCATCAGTACTCTTGCTGGACTTT
CCCTTAAAGAAGGAGAGGACCAGAAAGAGATAAAGATTGAGCCAGCTCAAGCTGTGGATGAAGT
GGAACCTTTACCTGAAGACTATTACACAAGACCAGTAAATTTAACAGAGGTGACTACCCTTCAG
CAGCGCCTCTTACAGCCTGACTTCCAACCAATTTGTGCTTCACAACTCTATCCTCGTCACAAAC
ATCTTCTGATCAAACGGTCCCTGCGCTGCCGAAAATGTGAACATAATTTGAGCAAGCCGGAATT
TAATCCAACATCTATCAAATTCAAAATCCAACTGGTTGCTGTCAATTATATTCCAGAAGTGAGA
ATCATGTCAATTCCCAACCTTCGCTACATGAAGGAGAGCCAGGTCCTTCTGACTCTTACGAATC
CTGTGGAAAACCTTACCCATGTGACTCTGTTTGAGTGTGAGGAGGGGGATCCTGATGATATCAA
TAGCACTGCTAAGGTGGTGGTGCCTCCCAAAGAGCTCATTTTAGCTGGCAAGGATGCAGCAGCA
GAATATGATGAGTTGGCAGAACCCCAGGATTTTCAGGATGATCCTGACATTATAGCCTTCAGAA
AGGCCAACAAAGTGGGCATTTTCATCAAAGTTACCCCTCAGCGCGAGGAGGGTGAAGTGACCGT
GTCCTTCAAGATGAAGCATGATTTTAAAAATCTGGCAGCCCCAATCCGCCCCATTGAAGAAAGT
GACCAGAGCACAGAAGTCATCTGGCTCACCCAGCATGTGGAACTCAGCTTGGGCCCGCTTCTTC
CTTAAAAGGTTACTTTGGTGGGCAGATTCCACCTGAGACAATGTCACCACAGACCTGTGTTAAA
ACATGGAAGCTCCTGCTTCATTAGGCTTTGTTTATCATGATGTACCCATGCACTACTCGGTCCT
CTTCCTAAGAGTGGGAGCACAAGCCAGGCATCGGGAACACAGGGTAACTGCTGTTCCTCTTGCT
GTCACCTCTATTGACACCAATCAATCTGTGTTTCCCTCACTGAGCCCTGCACGTTGAATAACAG
CAACATAGCTCCATCCCAGTAAAGGGGATGGCTGTTCCTCAGAATGGTGTTATATTTGCCACCT
GAGAAACTGACTATACTATCTCTTGATCTGATCTCACAAAGGATCATAATCCGACAGTTGAAAC
TTAACAGTGATATCCCAAAGGTGGACCTGCTATTAATGATCCAGCATTGGTCTCAATGTACCAG
CTGCTTTCTGCATTCCAGTGTAAATCATCTAGCCATCTAAAACTTACCCCTTTATTTGCCAACA
TGGCTCTCATTTTGTCATAGATTTCTGTTTGGCAAAAAAAAAAAAAAAATAGAATTGACATATT
ACCTTTAGTTTTGTGATGTTTGGAAAAACCTGTGAAATAAGGCACTCTCATTTACCCTCTTTCT
AGATGAATATAGGACACTAATTTATCAGTTGCTTTTAATTTTTTCCCAGAACAATATGAAGCTT
TTCCTTTTAAGAATGTGAAAGAAGCAAGGAATTACATGTCATATCAAGAGGGTAGCAAATTCCA
TTTGTTTTAAGTTTTGCCCCAAAACCTAGGAATGAATGCTGCCACAGGAGACAGTCTTTCTTCT
TACTGCTCATCCTCTCTTTTCTTCTCTGCCTTTTTAATTCAATAAATTGTTCTGAGTATTTGGG
ATTTGAAAAACTCCGCAGGAAACCTGAGTGGACAAGTTCACTTTGAGACTGTAAAAAACATTTT
AAAGGTTAGATTTTTAGTATGACCTGAAATAAAGTACTTTCCACTGATTTGAAGAAGAAATGAA
CTATTACAATGTCTTGAATCCAAAATTGGATATTAAGATGAGGGGGGCAAAAAACACCCCTCAC
TGAGTCTAAGCCTTTTGTCATATGGTGTATCAAATAAGACCATTTTGATTGTAAACCATAACAT
AATTCAGCAAGTAGCCCAGAGTGCTGGCCTAACAGCAGAGATGCTGTTTTCACCTGGGTCCTAG
CTGGGTTGCTAACCTTAATTTCTGTGATGTTTTCTCAAATGAGACTTAATACAATAAGTAGACC
ACCAGCTGCACCACATTTTCTCAAAAGTATTCTTGGTGTGTGGTCAACAGACTTTTGAGGAAAG
AAAAATTTCCTACTTACTTTTGTTTTTAATTCTCAGTCTTAAAAAAAATAATAAGATATATAAT
CTAGAATAGAGATACAAAATACTTGTCAGCTCTCCTTGAAAGACAAAGCTATTTGGGAAACTTT
TGAAGGACACTAAATTGCACCCTTAAGGTCAATTTTATGAAGCAATATTCTCACAGCCCAATAT
ATTGTGCTGCAACATAAGGGAAAAAATACTCATCTCTAATATTGTGATAATAACTAAAGTTTAG
CCTCTAGGGAATTGGGGCAGGGAGATGGGTATTATAAGTTTGCAGACTATAAAAAGAGCTTAAT
TTTTCGTGATCCCATAGAATGTCAAATTAATTTTTATTTCCCCACGTACTAGAGTCTGTTGTGA
AACCACTGCTTCATATTTGCCAGTGAAGGAAATGGGCAACAAAGGAGAGAGTAGCTTCATATGT
TTACACATTTGCATAGGCTGCTTGCAGTTTTATGTCATGCCTTTATGGCTTGTAGCTGGTATTT
GTTCCCAAAAGTAATAATGTTGCAGTAATAGGTCTCCTCACTCCAGTATGATACTGAAACATAA
AAACATTTTTGATCATAGAATTTTTTTCTTCAGAAGCCAAATTAACACAGAATAACAAGAGCCA
CTGGAGTAATGTTTCCTTGAGATGGGTTTTAGTGCAAGTTGATAATTCTGTGTGTTCATAGAGA
TGATTCAACACCTGCAGCTGGTGAGTTAGGAATTTCATCTGTTGCCTTTCTTACATTAGATCAG
GTGCAAGATTTTTAATGCTAGTGTGCACCACCACAGGAGAGTTAGACCTTGTCTGCACTGGAAA
CTAAAATTTTGGAAATATAAGGCTAAGTTAGTTTGGATTTGTGATTTGATTCACTCACCAAAGT
TTTATTTGTTTCAAAGTACATGTTATAGGCATAATGAGCTAAGTGTCATGCATATTGTGAAGAA
GCTTCCTTTTTGGGCCCTTTTGAGAATGAGAGGCACTCTTTGGTCTTCATGAAAGGTTACTGTT
TTGCCTTATTGCTTAATGTAGTGAAATAAAGCAGACAAAGCTTGAGTGTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005324209	(Get FASTA)	NCBI Sequence Viewer
	XP_005324210	(Get FASTA)	NCBI Sequence Viewer
	XP_013213611	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000012055.2
	ENSSTOP00000025718.1
GenBank Protein	KAG3265959	(Get FASTA)	NCBI Sequence Viewer
	KAG3265960	(Get FASTA)	NCBI Sequence Viewer
	KAG3265961	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005324210 ⟸ XM_005324153
- Peptide Label:	isoform X2
- UniProtKB:	A0A287CWR3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAK LKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSV ASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPR AGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQP ICASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYM KESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELILAGKDAAAEYDELAEPQD FQDDPDIIAFRKANKVGIFIKVTPQREEGEVTVSFKMKHDFKNLAAPIRPIEESDQSTEVIWLT QHVELSLGPLLP hide sequence

RefSeq Acc Id:	XP_005324209 ⟸ XM_005324152
- Peptide Label:	isoform X1
- UniProtKB:	I3ML16 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAK LKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSV ASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQHTIHVVDKYGLG TRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRL LQPDFQPICASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMS IPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELILAGKDAAAEYD ELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTVSFKMKHDFKNLAAPIRPIEESDQS TEVIWLTQHVELSLGPLLP hide sequence

RefSeq Acc Id:

XP_013213611 ⟸ XM_013358157

- Peptide Label:

isoform X3

- Sequence:

show sequence

MHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQR
MNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQHTIHVVDKYGLGTRLQRPRAGASISTL
AGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPICASQLYP
RHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLT
LTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELILAGKDAAAEYDELAEPQDFQDDPDII
AFRKANKVGIFIKVTPQREEGEVTVSFKMKHDFKNLAAPIRPIEESDQSTEVIWLTQHVELSLG
PLLP

hide sequence

RefSeq Acc Id:

ENSSTOP00000025718 ⟸ ENSSTOT00000031490

RefSeq Acc Id:

ENSSTOP00000012055 ⟸ ENSSTOT00000013453

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013446	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013453.3	UniProtKB/TrEMBL
	ENSSTOT00000031490.1	UniProtKB/TrEMBL
InterPro	DCTN4	UniProtKB/TrEMBL
NCBI Gene	Dctn4	ENTREZGENE
PANTHER	DYNACTIN SUBUNIT 4	UniProtKB/TrEMBL
	PTHR13034	UniProtKB/TrEMBL
Pfam	Dynactin_p62	UniProtKB/TrEMBL
UniProt	A0A287CWR3	ENTREZGENE, UniProtKB/TrEMBL
	I3ML16	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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