Kif1c (kinesin family member 1C) - Rat Genome Database

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Gene: Kif1c (kinesin family member 1C) Mus musculus
Analyze
Symbol: Kif1c
Name: kinesin family member 1C
RGD ID: 731800
MGI Page MGI
Description: Predicted to enable ATP hydrolysis activity; microtubule binding activity; and plus-end-directed microtubule motor activity. Acts upstream of or within retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in Golgi apparatus. Is expressed in alimentary system; hindbrain meninges; submandibular gland primordium; telencephalon; and vibrissa. Human ortholog(s) of this gene implicated in spastic ataxia 2. Orthologous to human KIF1C (kinesin family member 1C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: autoimmune orchitis resistance 3; B430105J22Rik; D11Bwg1349e; kinesin 1C; kinesin superfamily protein 1C; kinesin-like protein KIF1C; lethal factor toxin susceptibility 1; Ltxs1; MGC28766; N-3 kinsin; Orc; Orch3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,591,170 - 70,622,796 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,591,374 - 70,622,790 (+)EnsemblGRCm39 Ensembl
GRCm381170,700,396 - 70,731,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,700,548 - 70,731,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,514,050 - 70,545,472 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,518,995 - 70,545,074 (+)NCBIMGSCv36mm8
Celera1178,251,472 - 78,282,892 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. All kinesin superfamily protein, KIF, genes in mouse and human. Miki H, etal., Proc Natl Acad Sci U S A 2001 Jun 19;98(13):7004-11.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7777570   PMID:8889548   PMID:9275178   PMID:9720874   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11318612   PMID:11591317   PMID:11784862   PMID:12477932  
PMID:14578173   PMID:15368895   PMID:15905556   PMID:16141072   PMID:16141073   PMID:16429160   PMID:17360972   PMID:18554416   PMID:20188815   PMID:20360068   PMID:20368287   PMID:21267068  
PMID:21677750   PMID:21862448   PMID:21873635   PMID:23300462   PMID:23404705   PMID:26496610   PMID:28096452   PMID:31217419   PMID:31887784   PMID:32325033   PMID:34321999  


Genomics

Comparative Map Data
Kif1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,591,170 - 70,622,796 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,591,374 - 70,622,790 (+)EnsemblGRCm39 Ensembl
GRCm381170,700,396 - 70,731,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,700,548 - 70,731,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,514,050 - 70,545,472 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,518,995 - 70,545,074 (+)NCBIMGSCv36mm8
Celera1178,251,472 - 78,282,892 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
KIF1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,997,950 - 5,028,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,997,950 - 5,028,401 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,901,245 - 4,931,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,841,998 - 4,868,720 (+)NCBINCBI36Build 36hg18NCBI36
Build 34174,841,999 - 4,868,720NCBI
Celera174,916,054 - 4,946,508 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,789,123 - 4,819,525 (+)NCBIHuRef
CHM1_1174,910,557 - 4,941,008 (+)NCBICHM1_1
T2T-CHM13v2.0174,888,274 - 4,918,727 (+)NCBIT2T-CHM13v2.0
Kif1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,913,010 - 55,942,220 (+)NCBIGRCr8
mRatBN7.21055,414,412 - 55,444,587 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,415,900 - 55,443,545 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,094,995 - 60,124,344 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,583,507 - 59,612,860 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,082,608 - 55,111,959 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,322,259 - 57,352,395 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,322,331 - 57,351,353 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,067,764 - 57,097,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,580,646 - 57,622,517 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,594,268 - 57,636,139 (+)NCBI
Celera1054,559,969 - 54,589,678 (+)NCBICelera
Cytogenetic Map10q24NCBI
Kif1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,399,768 - 10,422,712 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,399,768 - 10,423,249 (+)NCBIChiLan1.0ChiLan1.0
KIF1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,608,356 - 12,635,096 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,576,729 - 14,603,468 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,046,488 - 5,073,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,035,014 - 5,061,957 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,035,014 - 5,061,957 (+)Ensemblpanpan1.1panPan2
KIF1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,613,335 - 31,635,313 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,613,398 - 31,633,736 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,751,844 - 31,773,973 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,717,236 - 31,739,368 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,717,299 - 31,737,640 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,683,805 - 31,705,933 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,643,532 - 31,665,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,819,860 - 31,841,999 (-)NCBIUU_Cfam_GSD_1.0
Kif1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,180,016 - 53,204,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,696,209 - 2,720,959 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,696,385 - 2,720,959 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,897,494 - 51,924,432 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,899,762 - 51,924,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21253,968,351 - 53,993,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,478,315 - 4,502,261 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605917,129,946 - 17,155,908 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,845,033 - 8,869,577 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,845,352 - 8,868,681 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kif1c
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3887
Count of miRNA genes:672
Interacting mature miRNAs:866
Transcripts:ENSMUST00000072187, ENSMUST00000094499, ENSMUST00000102554, ENSMUST00000137119, ENSMUST00000152618
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse

Markers in Region
RH125046  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,729,362 - 70,729,475UniSTSGRCm38
MGSCv371170,542,864 - 70,542,977UniSTSGRCm37
Celera1178,280,284 - 78,280,397UniSTS
Cytogenetic Map11B3UniSTS
UniSTS:224387  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,729,285 - 70,729,443UniSTSGRCm38
MGSCv371170,542,787 - 70,542,945UniSTSGRCm37
Celera1178,280,207 - 78,280,365UniSTS
Cytogenetic Map11B3UniSTS
Kif1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS
D11Bwg1349e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,729,287 - 70,729,470UniSTSGRCm38
MGSCv371170,542,789 - 70,542,972UniSTSGRCm37
Celera1178,280,209 - 78,280,392UniSTS
Cytogenetic Map11B3UniSTS
cM Map1137.0UniSTS
cM Map1157.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_153103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB001456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB074017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR933735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000072187   ⟹   ENSMUSP00000072048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,591,402 - 70,621,250 (+)Ensembl
GRCm38.p6 Ensembl1170,700,576 - 70,730,424 (+)Ensembl
RefSeq Acc Id: ENSMUST00000094499   ⟹   ENSMUSP00000092075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,591,387 - 70,621,213 (+)Ensembl
GRCm38.p6 Ensembl1170,700,561 - 70,730,387 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102554   ⟹   ENSMUSP00000099614
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,591,374 - 70,622,790 (+)Ensembl
GRCm38.p6 Ensembl1170,700,548 - 70,731,964 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137119   ⟹   ENSMUSP00000123242
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,591,476 - 70,622,790 (+)Ensembl
GRCm38.p6 Ensembl1170,700,650 - 70,731,964 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152618   ⟹   ENSMUSP00000136258
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,591,374 - 70,598,394 (+)Ensembl
GRCm38.p6 Ensembl1170,700,548 - 70,707,568 (+)Ensembl
RefSeq Acc Id: NM_153103   ⟹   NP_694743
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,591,374 - 70,622,796 (+)NCBI
GRCm381170,700,548 - 70,731,970 (+)NCBI
MGSCv371170,514,050 - 70,545,472 (+)RGD
Celera1178,251,472 - 78,282,892 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532321   ⟹   XP_006532384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,591,170 - 70,622,791 (+)NCBI
GRCm381170,700,396 - 70,731,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532322   ⟹   XP_006532385
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,591,323 - 70,622,791 (+)NCBI
GRCm381170,700,396 - 70,731,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532323   ⟹   XP_006532386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,591,314 - 70,614,958 (+)NCBI
GRCm381170,700,396 - 70,724,132 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156351   ⟹   XP_036012244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,591,314 - 70,622,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156352   ⟹   XP_036012245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,591,331 - 70,622,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156353   ⟹   XP_036012246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,591,170 - 70,622,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156354   ⟹   XP_036012247
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,591,323 - 70,622,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156355   ⟹   XP_036012248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,595,769 - 70,622,796 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156356   ⟹   XP_036012249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,609,826 - 70,622,796 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949317
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,591,314 - 70,622,790 (+)NCBI
GRCm381170,700,396 - 70,731,965 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_694743   ⟸   NM_153103
- UniProtKB: Q5SX62 (UniProtKB/Swiss-Prot),   O35071 (UniProtKB/Swiss-Prot),   Q8VI89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532384   ⟸   XM_006532321
- Peptide Label: isoform X2
- UniProtKB: Q5SX62 (UniProtKB/Swiss-Prot),   O35071 (UniProtKB/Swiss-Prot),   Q8VI89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532385   ⟸   XM_006532322
- Peptide Label: isoform X2
- UniProtKB: Q5SX62 (UniProtKB/Swiss-Prot),   O35071 (UniProtKB/Swiss-Prot),   Q8VI89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532386   ⟸   XM_006532323
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSMUSP00000136258   ⟸   ENSMUST00000152618
RefSeq Acc Id: ENSMUSP00000072048   ⟸   ENSMUST00000072187
RefSeq Acc Id: ENSMUSP00000092075   ⟸   ENSMUST00000094499
RefSeq Acc Id: ENSMUSP00000123242   ⟸   ENSMUST00000137119
RefSeq Acc Id: ENSMUSP00000099614   ⟸   ENSMUST00000102554
RefSeq Acc Id: XP_036012246   ⟸   XM_036156353
- Peptide Label: isoform X1
- UniProtKB: E9Q9B0 (UniProtKB/TrEMBL),   Q6A011 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012244   ⟸   XM_036156351
- Peptide Label: isoform X1
- UniProtKB: E9Q9B0 (UniProtKB/TrEMBL),   Q6A011 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012247   ⟸   XM_036156354
- Peptide Label: isoform X1
- UniProtKB: E9Q9B0 (UniProtKB/TrEMBL),   Q6A011 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012245   ⟸   XM_036156352
- Peptide Label: isoform X1
- UniProtKB: E9Q9B0 (UniProtKB/TrEMBL),   Q6A011 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012248   ⟸   XM_036156355
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036012249   ⟸   XM_036156356
- Peptide Label: isoform X5
Protein Domains
FHA   Kinesin motor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35071-F1-model_v2 AlphaFold O35071 1-1100 view protein structure

Promoters
RGD ID:6821187
Promoter ID:MM_KWN:8250
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000072187,   ENSMUST00000102554,   ENSMUST00000108541,   ENSMUST00000108542,   ENSMUST00000108543,   NM_153103,   NM_213729,   OTTMUST00000013678,   OTTMUST00000013679,   OTTMUST00000013680,   OTTMUST00000013709,   UC007JWG.1,   UC007JWM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,512,781 - 70,514,367 (+)MPROMDB
RGD ID:8675368
Promoter ID:EPDNEW_M15714
Type:initiation region
Name:Kif1c_1
Description:Mus musculus kinesin family member 1C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,700,509 - 70,700,569EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1098260 AgrOrtholog
Ensembl Genes ENSMUSG00000020821 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072187 ENTREZGENE
  ENSMUST00000072187.12 UniProtKB/TrEMBL
  ENSMUST00000094499 ENTREZGENE
  ENSMUST00000094499.11 UniProtKB/Swiss-Prot
  ENSMUST00000102554 ENTREZGENE
  ENSMUST00000102554.8 UniProtKB/Swiss-Prot
  ENSMUST00000137119.3 UniProtKB/Swiss-Prot
  ENSMUST00000152618.9 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.2520 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1098260 ENTREZGENE
NCBI Gene 16562 ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN KIF1C ISOFORM X1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kif1c PhenoGen
PRINTS KINESINHEAVY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KISc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9Q9B0 ENTREZGENE, UniProtKB/TrEMBL
  KIF1C_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3V3Y9_MOUSE UniProtKB/TrEMBL
  Q5SX62 ENTREZGENE
  Q6A011 ENTREZGENE, UniProtKB/TrEMBL
  Q8VI89 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q5SX62 UniProtKB/Swiss-Prot